Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1761 ATGGCTATGGATGATACCGAGAGCTGTAGTAGTAGACCGGCGGATGATTTTTCGGCTCAGACTTGGAGACAGAAGCAGAAGGTTGGTGTTTACGACGAAGTTCTTCGTCGACTCAGGCTGTCGCACGAAGCGGAGACCAGCCTTCCTGGTTTCGAGGATGAACTTTGGACTCATTTTCATCGACTTCCTGCTAGGTATGCTATGGACGTCAACGTAGAGAGGGCTGAAGATGTTCTCATGCACAAAAATCTTCTCTACATGGCACATGATCCTGCTACTCGACCAGCTATTGATATCCGTCTCGTACAGGTTCATTCATCTCCTGGCAGAAACTTTGGCAAGTCCGTTCATTCAAACTTGAAGGAAAAAGTGAACCAGCGGTTTTCTGGTTATGACAGCAATCAGAGACATCACCCCCCACCAGCATTTGGTTCAACAACAGAGGTCGAATATAGTTTTGAGACCAACCAATTACATGATATAGACCAACCTGGCACTTTCTCCTGGCCAATGCATGAAATTACAATATCAACAATTGACAAGCCAAAACTGCTCAGTCAGTTGACGTCCTTACTTTCTGAGATTGGGCTGAATATTCAAGAAGCGCATGCTTTTTCAACAACAGATGGCTTTTCCTTGGATGTTTTTCTAGTTGATGGTTGGGCAATTGAGGATACCAAGCAGCTAAAAGATATACTCGCAGAAGAAATATCAAAGATTCAGAAAAGGCATCCTGTATTTACACCTTGCATCTTCCGTACTGGGAAGCAAGACAAAATTGGAATCCAGTTCATCACAAAGTATGTCAACATTCCGAGGGACGAAGTTGATGAATGGGAAATTGATGCAACCCTGCTAGTCTTTGAGAAGAAAATTGCGTCTGGATCTCTTAGTGACTTGTATAAAGGCACCTTCTATGGTCAAGATGTGGCTATTAAGGTTCTAAAAGATGAAAACTTGAACGAGACTGTACGGCGGGAATTTGCTCAAGAAATTCATATCATGAGAAAACTTCGGCATAAGAATGTTGTCCAATTTATTGGTGCATCTACCAGGCCTCCACACTTTTTCATTGTTACAGAATACATGTCTGGTGGAAGCATACACGACTTTTTACATCAACAAAAGGGTGTTCTTAGTTTTCCTTCCTTACTAAGAGTGGCAGTTGACGTGTCCAAGGGAATGAACTATTTGCATCAAAAGAATATCATTCATAGAGATCTGAAAGCTGCAAATCTTTTGATGGATGAAGATGGGGTTGTCAAGGTAGCTGATTTTGGTGTTGCTAGAGTGCAAGCTCAATCTGGTGTGATGACTGCAGAAACTGGAACATATCGTTGGATGGCTCCAGAGGTTATTGAGCACAAACCATATGATCGTAAAGCTGATGTTTATAGCTTTGGGATAGTGTTGTGGGAGCTGCTTACAGGACAGCTGCCTTATGAGAACTTGACTCCGTTACAAGCAGCAATTGGCGTGGTCCAGAAGGGTCTGAGGCCTAAGATTCCGAGGTATGCTCATCCAATGATCGTGGATTTGCTCAAGAAATGCTGGCTTCAGGATCCATCTTTGAGACCCGAATTCTCAGAAATTACGAGACTTCTACAGCAGACATTGCTGAAGGAGGCACTTCACGTTCCTGGAACAGATTATATAATAAGAAACTTGCGAGTGACAGGTACCATCTGGAAGATGATAAAAAAATTTGGGCTGGAGAGGACGTTCTATGGAGGATACGGTATCCAACTACTTTCTAATTGTCTTTTCACATGTTGTAAATTTGCTTTCACATAG 1794 42.7 MAMDDTESCSSRPADDFSAQTWRQKQKVGVYDEVLRRLRLSHEAETSLPGFEDELWTHFHRLPARYAMDVNVERAEDVLMHKNLLYMAHDPATRPAIDIRLVQVHSSPGRNFGKSVHSNLKEKVNQRFSGYDSNQRHHPPPAFGSTTEVEYSFETNQLHDIDQPGTFSWPMHEITISTIDKPKLLSQLTSLLSEIGLNIQEAHAFSTTDGFSLDVFLVDGWAIEDTKQLKDILAEEISKIQKRHPVFTPCIFRTGKQDKIGIQFITKYVNIPRDEVDEWEIDATLLVFEKKIASGSLSDLYKGTFYGQDVAIKVLKDENLNETVRREFAQEIHIMRKLRHKNVVQFIGASTRPPHFFIVTEYMSGGSIHDFLHQQKGVLSFPSLLRVAVDVSKGMNYLHQKNIIHRDLKAANLLMDEDGVVKVADFGVARVQAQSGVMTAETGTYRWMAPEVIEHKPYDRKADVYSFGIVLWELLTGQLPYENLTPLQAAIGVVQKGLRPKIPRYAHPMIVDLLKKCWLQDPSLRPEFSEITRLLQQTLLKEALHVPGTDYIIRNLRVTGTIWKMIKKFGLERTFYGGYGIQLLSNCLFTCCKFAFT 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26025966 26032300 - CcPI632755_05g017610.1 Cco05g1761 179389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1761 597 Coils Coil 223 243 - -
Cco05g1761 597 SUPERFAMILY Protein kinase-like (PK-like) 267 534 IPR011009 -
Cco05g1761 597 CDD STKc_MAP3K-like 292 535 - -
Cco05g1761 597 ProSitePatterns Serine/Threonine protein kinases active-site signature. 403 415 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g1761 597 Gene3D Phosphorylase Kinase; domain 1 273 364 - -
Cco05g1761 597 FunFam Serine/threonine-protein kinase isoform 1 276 364 - -
Cco05g1761 597 SUPERFAMILY ACT-like 171 238 IPR045865 -
Cco05g1761 597 Pfam Protein tyrosine and serine/threonine kinase 287 534 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g1761 597 SMART serkin_6 286 540 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g1761 597 ProSiteProfiles Protein kinase domain profile. 286 540 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g1761 597 Gene3D - 171 246 - -
Cco05g1761 597 Gene3D Transferase(Phosphotransferase) domain 1 365 549 - -
Cco05g1761 597 ProSiteProfiles ACT domain profile. 173 249 IPR002912 -
Cco05g1761 597 PANTHER SERINE-THREONINE PROTEIN KINASE 155 539 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cco05g1761 597 PRINTS Tyrosine kinase catalytic domain signature 443 453 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g1761 597 PRINTS Tyrosine kinase catalytic domain signature 397 415 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g1761 597 PRINTS Tyrosine kinase catalytic domain signature 506 528 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g1761 597 PRINTS Tyrosine kinase catalytic domain signature 462 484 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g1761 597 PRINTS Tyrosine kinase catalytic domain signature 360 373 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0205 Cco-Chr1:1941963 Cco05g1761 Cco-Chr5:26025966 2.50E-25 dispersed
Cco03g0718 Cco-Chr3:7372282 Cco05g1761 Cco-Chr5:26025966 2.40E-41 dispersed
Cco05g0564 Cco-Chr5:4580767 Cco05g1761 Cco-Chr5:26025966 2.50E-19 dispersed
Cco05g1761 Cco-Chr5:26025966 Cco10g0042 Cco-Chr10:473834 1.80E-181 dispersed
Cco05g1761 Cco-Chr5:26025966 Cco04g1941 Cco-Chr4:33738205 2.50E-66 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86854 PF07714 PK_Tyr_Ser-Thr 7.00E-72 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1761 - - - 0.0