Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1779 ATGGACGGCTTTAAATATGCAGGGGACTCTGTTCCACTTCATCACTTGATCACTTCTTCTTCATCCGCCATTTCCAATTCTCTCTCTCTCTCTCTCTCTGTCTCTCGTTTGCTTTCAATGGCTCAAACCACGCCCAATCACACTCAGACAGTCTCCGGTTGGGCAGCCCATGATTCTTCCGGCAAGATCAGTCCGTATACTTTCAAACGCAGAGAAAACGGCCCCGAGGACGTGACGATAGAGATTTTGTACTGTGGAATATGCCATACCGATATTCACTACGCCAAAAACGAGTGGGGCATTACCATGTATCCTGTAGTTCCCGGGCATGAGATGACAGGGGTAATCACGAAAGTGGGAAGCAACGTGAAGAAGTTCAAAATAGGGGACAGAGTGGGGGTTGGTTGTATAGCTGCTTCCTGTTTGAACTGCGAGTTTTGTCAAGATTCCCAAGAAAACTACTGTGAGAATTTGCAGTTTACATACAACGGAATCTTCTGGGATGGGAGCATAACTTACGGGGGATACTCCAAAATGTTTGTTTCAGATCAGAGGTACGTGGTGCACATACCTGAAAGCCTGCCAATGGACGCAGCAGCGCCGTTGCTGTGTGCCGGAATAACAGTGTTCACGCCGATGAAAGATCTCGGCCTGATCGAGTCGGCGAGAAAGAAGGTGGGAGTGGTGGGGCTTGGAGGTCTGGGCCACATAGCAGTAAAATTTGCAAAGGCGTTTGGACACCATGTGACTGTGATCAGCACCTCTGCTTCAAAGGAACAAGAAGCTAAGGAGCGGCTTGGCGCTGACGATTTCATAGTCAGTAAAGATCCTGAGCAAATGCAGAGTTATAAGAGGACGTTGGATTTCATATTGGACACAGTGTCGGCGCAGCACTGTATTGGACCAATCTTAGAACTGCTAAAAGTGAATGGGACATTGTCCATTGTGGGAGCTCCAGACAAGCCCATTCAATTGCCCTCTTTTCCTTTAATATTTGGGAAGAGGACAGTGAAGGGAAGCATAATAGGTGGAATACAAGAGACACAAGAGATGATGGATTTGTGTGGGAAATACAAAATTACAAGTGATATTGAAGTGATTAAGCCAGAAGATATCAACCATGCTATGGAACGTCTTCTCAAAAGCGATGTTCGATATCGATTTGTCATTGACATTGCCCAAAACATAATCCAATAA 1197 46.03 MDGFKYAGDSVPLHHLITSSSSAISNSLSLSLSVSRLLSMAQTTPNHTQTVSGWAAHDSSGKISPYTFKRRENGPEDVTIEILYCGICHTDIHYAKNEWGITMYPVVPGHEMTGVITKVGSNVKKFKIGDRVGVGCIAASCLNCEFCQDSQENYCENLQFTYNGIFWDGSITYGGYSKMFVSDQRYVVHIPESLPMDAAAPLLCAGITVFTPMKDLGLIESARKKVGVVGLGGLGHIAVKFAKAFGHHVTVISTSASKEQEAKERLGADDFIVSKDPEQMQSYKRTLDFILDTVSAQHCIGPILELLKVNGTLSIVGAPDKPIQLPSFPLIFGKRTVKGSIIGGIQETQEMMDLCGKYKITSDIEVIKPEDINHAMERLLKSDVRYRFVIDIAQNIIQ 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26444826 26447438 - CcPI632755_05g017790.1 Cco05g1779 179407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1779 398 SMART PKS_ER_names_mod 61 390 IPR020843 GO:0016491(InterPro)
Cco05g1779 398 FunFam probable cinnamyl alcohol dehydrogenase 54 215 - -
Cco05g1779 398 Pfam Alcohol dehydrogenase GroES-like domain 74 192 IPR013154 -
Cco05g1779 398 CDD CAD1 53 391 IPR047109 GO:0016616(InterPro)
Cco05g1779 398 Gene3D - 205 362 - -
Cco05g1779 398 SUPERFAMILY GroES-like 56 220 IPR011032 -
Cco05g1779 398 Pfam Zinc-binding dehydrogenase 233 355 IPR013149 -
Cco05g1779 398 FunFam Cinnamyl alcohol dehydrogenase 205 362 - -
Cco05g1779 398 Gene3D - 54 392 - -
Cco05g1779 398 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 109 123 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
Cco05g1779 398 PANTHER ALDEHYDE REDUCTASE 46 394 IPR047109 GO:0009809(PANTHER)|GO:0016616(InterPro)|GO:0016616(PANTHER)|GO:0045551(PANTHER)
Cco05g1779 398 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 194 360 IPR036291 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1584 Cco-Chr4:31215056 Cco05g1779 Cco-Chr5:26444826 2.10E-121 dispersed
Cco05g1779 Cco-Chr5:26444826 Cco09g2103 Cco-Chr9:35395673 3.00E-12 dispersed
Cco05g1779 Cco-Chr5:26444826 Cco05g1196 Cco-Chr5:11119277 1.90E-99 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1779 K00083 - csv:101213170 674.085