Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1784 ATGCAAACCATTTCTTTATTTGTCTTTTTGGTTTTGGTTCTTTCCGAAAATGCTAAAATAGCTGAAGCTGCTGAAGGTGGAAAAAATGGCGTTTATATTGTCTACATGGGATCCGCGTCTGCCTCCACGACTGACTTCCTTCGGCTTCTTACCTCTGTCAACAGGCGAAACGAAGTGGTACACATATATAAACATGGGTTCATAGGATTTGCAGCTCGTCTGTCAGAACAGGAAGCCCATGCCATGAGACAAAGCCCTGGAGTTGTTTCGGTTTTTCCAGATCCAATATTGAAGTTGCACACAACTCATTCATGGGATTTCTTGGTTAGTCAGACTAGCGTCAAAATCGACGCCAATCCCAAATCAGATCCCCCAACCTCTTCCTCTCAACAATATGATACCATTATCGGCATCTTGGACACTGGTATCTGGCCAGAATCGGAAAGTTTTAGTGACAAGGGTATGAGCCCAATACCGTCGAGGTGGAAAGGTACCTGCATGGTTGGCGATGACTTCACTTCCACCAACTGTAACAGAAAAATCATTGGAGCAAGATTTTACGAAAGTTCAGACAGCGACGGGACAAGGTACCACTCACCTCGAGACGGTGCTGGACATGGCACCCACGTTGCATCAACGGCGGCCGGCAGCGCCGTGGCTAATGCATCATACTATGGCCTCGCAGAAGGGACGGCCAAGGGCGGGTCCCCCGGCTCAAGGATCGCCATGTACAGAGTCTGCGTGGCCGACGGCTGTCATGGGTCGTCAATCATGAAGGCCTTTGATGATGCCATCGCCGATAGGGTCGATGTATTGTCCTTATCTCTCGGGGCACCCTCCTACGTCAAACCAGAGTTGACGGCCGACCCTATTGCCATCGGAGCCTTTCATGCAGTTGAGAAGGGGATTACAGTTGTCTGCTCCGCTGGAAACGACGGCCCCACTTCGGGATCGGTGGTTAACGACGCACCGTGGATAATAACAGTGGCTGCCTCCACCATTGATAGGGATTTTGAGTCTGATGTTGTGTTGGGCAACAAAAAAGTGATCAAGGGAGAAGGTATAAATTTCTCTGCTCTTCAAAAGTCTCCTGTATACCCACTGATACAAGGCAAGTCAGCCAAGAAAGCGAGTGCCAGTGAAGACAGTGCAAGGATTTGTTCTGAAGACTCCATGGACGAAGCTCTAGTGAAGGGGAAGATAGTTATTTGCGAAAACAGTTTCGAAGGAGGCGGTTCTGATTGGCAAGGTCAGGCTGAAACAGTGAAGAATCTTGGAGGGGTCGGGGTAGTTTTGATTGATGACAACTCAAAATTAGTTGCAGAGAAATTTCCTTCTCCCATGACAGTTATTAGCAAAAAGGATGGTGCTGAGGTCCTCTCCTATGTTAAATCAAGCAGGAATCCAGTTGCTACAATCCTGCCCACTGTGACCATAATAAACTATAAGCCAGCGCCTGCTATAGCATACTTTTCATCCCGAGGGCCTAATCTCGCAGTATTAAACCTGATTAAGCCGGACATATCAGCACCAGGAGTGAATATTCTTGCAGCCTGGCTTGGCAATGATTCAAGCTCTACTCCACAAGCAACAAAGTCACCACTCTTCAATGTGATCTCAGGAACTTCAATGTCCTGCCCGCATGTCTCTGGCGTAGTGGCCTATGTAAAATCTCAAAACCCTACATGGAGTCCCTCAGCAATTAAATCGGCCATCATGACCACAGCAATTCAAACAAATAACTTGGGATCGCCAATGACTTTGGATACGGGATCAATAGCCACACCTTATGATTATGGGGCAGGAGAAATATCAACCAACGGAGCATTACAACCAGGACTAGTTTATGAAACTAGTACAACAGACTACTTAAACTACCTTTGCGGCCGAGGTTATAACCGGTCCACCATTAAGAGCATCTCAACTACTGTTCCTGATGGGTTTGATTGCCCCAAGAACTCAACTGTAGACTACATATCCAACATGAACTACCCATCAATTGCAGTATCCGAATTGAAAGGCAAGGAAAGCAAGAAAGTAACAAGAACGGTTACGAATGTTGGTGGTGCTGGTGAAACAGTTTACACAGTCAGCATAGACGCACCTGAGGAAGTAGATGTCAAAGTGATTCCAGAGAAATTGAAATTTGGAAAGAACAATGAGAAGCAGAGTTACCAAGTGGTTTTCACCCCAACTGTACCCACACTGCAGAAAGAAGTCCCTGGTTCAATAACTTGGACCAATGGAAAACATCAAGTCCGGAGTCCATTTGTCGTCACTAGTAAGAGTAGTGAGTCATAA 2301 46.59 MQTISLFVFLVLVLSENAKIAEAAEGGKNGVYIVYMGSASASTTDFLRLLTSVNRRNEVVHIYKHGFIGFAARLSEQEAHAMRQSPGVVSVFPDPILKLHTTHSWDFLVSQTSVKIDANPKSDPPTSSSQQYDTIIGILDTGIWPESESFSDKGMSPIPSRWKGTCMVGDDFTSTNCNRKIIGARFYESSDSDGTRYHSPRDGAGHGTHVASTAAGSAVANASYYGLAEGTAKGGSPGSRIAMYRVCVADGCHGSSIMKAFDDAIADRVDVLSLSLGAPSYVKPELTADPIAIGAFHAVEKGITVVCSAGNDGPTSGSVVNDAPWIITVAASTIDRDFESDVVLGNKKVIKGEGINFSALQKSPVYPLIQGKSAKKASASEDSARICSEDSMDEALVKGKIVICENSFEGGGSDWQGQAETVKNLGGVGVVLIDDNSKLVAEKFPSPMTVISKKDGAEVLSYVKSSRNPVATILPTVTIINYKPAPAIAYFSSRGPNLAVLNLIKPDISAPGVNILAAWLGNDSSSTPQATKSPLFNVISGTSMSCPHVSGVVAYVKSQNPTWSPSAIKSAIMTTAIQTNNLGSPMTLDTGSIATPYDYGAGEISTNGALQPGLVYETSTTDYLNYLCGRGYNRSTIKSISTTVPDGFDCPKNSTVDYISNMNYPSIAVSELKGKESKKVTRTVTNVGGAGETVYTVSIDAPEEVDVKVIPEKLKFGKNNEKQSYQVVFTPTVPTLQKEVPGSITWTNGKHQVRSPFVVTSKSSES 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26485470 26489993 + CcPI632755_05g017840.1 Cco05g1784 179412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1784 766 SUPERFAMILY Subtilisin-like 131 614 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco05g1784 766 Pfam Subtilase family 134 585 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Cco05g1784 766 ProSitePatterns Serine proteases, subtilase family, serine active site. 541 551 IPR023828 -
Cco05g1784 766 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 15 100 IPR037045 -
Cco05g1784 766 ProSiteProfiles Serine proteases, subtilase domain profile. 104 610 - -
Cco05g1784 766 ProSitePatterns Serine proteases, subtilase family, histidine active site. 206 216 IPR022398 -
Cco05g1784 766 FunFam subtilisin-like protease SBT1.5 335 480 - -
Cco05g1784 766 PRINTS Subtilisin serine protease family (S8) signature 131 150 IPR015500 -
Cco05g1784 766 PRINTS Subtilisin serine protease family (S8) signature 202 215 IPR015500 -
Cco05g1784 766 PRINTS Subtilisin serine protease family (S8) signature 540 556 IPR015500 -
Cco05g1784 766 CDD PA_subtilisin_like 341 473 - -
Cco05g1784 766 Gene3D - 627 762 - -
Cco05g1784 766 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 31 758 IPR045051 -
Cco05g1784 766 Pfam Fibronectin type-III domain 661 759 IPR041469 -
Cco05g1784 766 CDD Peptidases_S8_3 97 577 IPR034197 -
Cco05g1784 766 Pfam PA domain 386 457 IPR003137 -
Cco05g1784 766 FunFam Subtilisin-like protease SBT1.5 133 345 - -
Cco05g1784 766 Gene3D Peptidase S8/S53 domain 133 623 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco05g1784 766 Gene3D - 335 480 - -
Cco05g1784 766 Pfam Peptidase inhibitor I9 31 100 IPR010259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1784 Cco-Chr5:26485470 Cco08g1223 Cco-Chr8:23940209 7.60E-153 dispersed
Cco05g1784 Cco-Chr5:26485470 Cco09g0103 Cco-Chr9:902807 8.60E-149 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1784 K25898 - csv:101213415 1318.52