Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1791 ATGGCTCAATATAGGGGACTTGAAAAGTTTATTCAGGTTTCTCTCGCTTCTTTGAACCCCACAATGGATAATGTGAGGACGGAGAACAACCAGCAGAGTAGACCAAACCCTTGGGTGTCTCAGAACTCATCGGAGGTGAATCCCCAACCCAGAGAAACCTCTCAATCTCGAAGATACTCTCCAAGCTTGTGCAACTGTGTAGGGATGGGATCAAACGTCTCGAGCAATAGACGTCAACGCTCATCTGAGATGCTGGAATTAAAGGTGGCAGAATTGGAGAGGGAACTGCTGAAGCAGAAAGAAATCCAGCTTATCTTTAAGAAGAGGATGGATAGAGCACAAGATTCTCTCAAGTGCTTCCTAGAGAAAGCCCAGGACCGTGGATTCTTGCACCTCATAATTGGGAACAGAGACAATGGCAATGGTGACGGCGATGGCAGCCCAAATTGCATTCAAAGTGCTGGTTCCAGCCCCGGAATGCCCTCCTCAAGCCATCCGTTTGCAGACCTACAGCCACTCATCGAGCAAGCCAAGCTCCATGGATGGTACATCGAACCACATGAGATTGAACTGAGGGAGAAGATAGGGCAAGGGACAACGGCCAACATATACAAGGCAACATGGAGGGGTCTTGACGTTGCAGTGAAATGCCTTAACCAAGACTTCTTCTGCTCGAATGAGTGTGGCGTATCTTACTTCGCACAGGAGCTAGAGACGCTCTGTCGACAGCGCCACCGGTTTGTGCTGCAACTGATGGGAGCATGTCTCCAGCCACCGGGTTGCGGGTGGATTGTAACGGAACATTTAAGGATGACATTGCAGGAGTGGCTACATGGGCCAGGGAAGAGGAAGAAAGAGAGGGCAATTCCTCTGCCTCCATTTCAAGAGAGGTTGTTGAAGGCACTTGAAATATCTCAAGGGATGCAATATCTTCATGAACAGAAGCCTAGGGTCATACATCGTGATTTGAAGCCTAGCAATATTTTCTTGGACGATGCTTTCCATGTGAGAGTTGCTGATTTTGGCCATGCCCGCTTCCTCCACGACAGACATATGGCTCTCACTGGAGAAACAGGAACCTATGTTTATATGGCACCAGAGGTGATTCGATGCGAGCCTTACACAGAAAAGAGTGATATATATAGTTTTGGTATCATATTAAACGAACTTATAACAGGAAAATATCCTTATATTGAGATTGATTATTCTCCATTCAAGATTGCCATGGAAGTTGGAGAAGGCAACCTGAGACCGGAGCTTCCGGTGGACGAGGATGAGAGCCTAAAGGAGCTTTTAGATCTGATTTGCGCATGTTGGAATGGAAATCCCACCGTCCGACCATCTTTTGCAACAATAACGGGTTGCTTGAAGAAAATTCAAAATTAA 1386 46.9 MAQYRGLEKFIQVSLASLNPTMDNVRTENNQQSRPNPWVSQNSSEVNPQPRETSQSRRYSPSLCNCVGMGSNVSSNRRQRSSEMLELKVAELERELLKQKEIQLIFKKRMDRAQDSLKCFLEKAQDRGFLHLIIGNRDNGNGDGDGSPNCIQSAGSSPGMPSSSHPFADLQPLIEQAKLHGWYIEPHEIELREKIGQGTTANIYKATWRGLDVAVKCLNQDFFCSNECGVSYFAQELETLCRQRHRFVLQLMGACLQPPGCGWIVTEHLRMTLQEWLHGPGKRKKERAIPLPPFQERLLKALEISQGMQYLHEQKPRVIHRDLKPSNIFLDDAFHVRVADFGHARFLHDRHMALTGETGTYVYMAPEVIRCEPYTEKSDIYSFGIILNELITGKYPYIEIDYSPFKIAMEVGEGNLRPELPVDEDESLKELLDLICACWNGNPTVRPSFATITGCLKKIQN 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26608999 26614461 + CcPI632755_05g017910.1 Cco05g1791 179419

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1791 461 Coils Coil 82 102 - -
Cco05g1791 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 318 330 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g1791 461 Gene3D Phosphorylase Kinase; domain 1 172 269 - -
Cco05g1791 461 ProSiteProfiles Protein kinase domain profile. 189 461 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g1791 461 PANTHER SERINE-THREONINE PROTEIN KINASE 36 457 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cco05g1791 461 ProSitePatterns Protein kinases ATP-binding region signature. 195 216 IPR017441 GO:0005524(InterPro)
Cco05g1791 461 SMART serkin_6 189 456 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g1791 461 Pfam Protein kinase domain 190 452 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g1791 461 MobiDBLite consensus disorder prediction 23 62 - -
Cco05g1791 461 CDD STKc_MAP3K-like 195 453 - -
Cco05g1791 461 Gene3D Transferase(Phosphotransferase) domain 1 290 461 - -
Cco05g1791 461 SUPERFAMILY Protein kinase-like (PK-like) 168 453 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1791 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1791 Cco-Chr5:26608999 Cco10g0042 Cco-Chr10:473834 1.10E-45 dispersed
Cco05g1791 Cco-Chr5:26608999 Cco01g1456 Cco-Chr1:26321588 6.40E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g143 . . . . . Bpe02g00332 . . . . . . Car09g00308 . . . Cpe06g00255 . . . . . . . Cla05g01617 Cam05g1730 Cec05g1735 Cco05g1791 Clacu05g1719 Cmu05g1603 Cre05g1730 Cone4ag1692 . . . . . . . Blo17g00274 . . . Bpe14g00279 . . Bma02g00338 . . Cmo09g00582 Cma09g00361 . . . . . Bhi09g03092 . . . . . . . . . . . . . . . . Cme07g00188
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010809 0 2 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86856 PF00069 Pkinase 9.10E-45 CL0016 Cco PK