Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1792 ATGGATGTGAATGGCAATAAACCTCTGAAATCTGTTCAAAGAAGTTCTTCTCAGAAGGAAAGTGAAAATGGAGGCCAAGTTGTGGTTGAAATTAGCAGCGTTGTTTCTTCCAAAGAAACCAGAGATGAAAAGGGCTACTCTGTGCCGAAGCCAAACAGAGTCGGTTCGCAGGCCACAGAGCCGACCGATTCGAGCATCCCCAGTTCAAATGGAAACCTCACGCACAGAAGATCTCTCAAAAGATCAATCCTGTCAAGACCCAAATCAAGATTTGGGGAACAGCCACGTTACATCGATTCAGATATGTTTGAGGAGAATCATTCGTCGTTGAGAGAACAAATCGGTGCAACTTCATCCAGAAGATCTGCTCTGGTCCAAACTGAGAAAGAAGATGATGAGGGAATCGTCAAGATAGAGCCGTTGGACAAAAAGCACAAGAAAGTGAAGGTGAAGACATTGATTAAGTTAGTTGGAGTTTTTTGCATAATTGGTTGCTTGGTGGCTAGTTTGACTGTTAACCATTTGAAGAATCGCTTCTTTTGGGGATTGAGGGTTTGGAAATGGTGTTTACTTGCTACTGTGATTTTGTGTGGAATGATATTTACTCATTGGGTTGTGCATATTGTTGTCAGTTTGATTGAGGGGAACTTTTTGCTTAAGAAAAAAGTGCTTTATTTTGTTCATGGATTGAAGAAGAGTGTCCAAGTGACCATTTGGTTGGCATTGGTTCTTGTAACATGGGTGTCACTGTTCGATCGGAGAAACCATAGGAATTCTAATTTTGGAATCACTGGGAAGATTTTGGATACTATTACATTGACTCTGGTAGCCCTTCTTGTAGGGACATTCCTGTGGTTGATAAAAACATTGTTGTTGAAAATACTGGCCTCCAAGTTCCATAAGAACCAATTTTTCGACAGAATTCAGGAATCCCTTTTCCATCATCATGTTCTACAAACCCTCTTGAAGTCTCCATTAATGGAGGGGGATGGAAGTACTGCCAAGTTCAGCTGTTGTCAATTTACTTTGGAGAGTAAAAAATCAGAACATAAGAAGGTGATTGACATGGGAAAGATTCACCAGCTGCAGCGAGAGAAGGTAACCGCTTGGACAATGAAGGTGTTGATCGAGGCAGTTTCAAGTTCGGAGATGTCGATCTCACAAATGCTCGATGAAAGCTACCACAATGTTGCTGATGGTGAGATCACTGATGAAATGGAAATTGCCAGTGCCGTTGCCTGCAAGATCTTAAAAAATGTTGCTCTTGGAAAAAAGTTCATACAAGAAGAGGATCTTATGAAATTCATGGTCAAAGAAGAAATTGATCTTGTGTTACCACACTTTGAGGTAGATGAGACAGGGAAGATTGATGAGAAAGCTCTAAGAAAATGGGTGGTGAAGGTTTATCAAGAGAGGAAAACTCTAGCACATGCCTTGAATGACACTAAAACAGCTGTTAAGCAATTGAATAATTTGGTAACAGCGCTTCTTATAATAGTAACCGCTGTTATTTGGCTTCTGTTGATGGAAATTGCTACATCCAAAGTACTCGTTTTCCTTCTATCTCAACTTGCAGTGGCAGCTTTCATGTTTGGAAACTCTTGCAAGACTGCATTTGAAGCTCTAATCTTTGTGTTTGTTATGCATCCATTTGATGTTGGGGACCGTTGTGCCGTCGATGGCGTCCAGCTGTTGGTTGAAGAAATGAACATCTTGACGACAGTCTTCTTGAAACTCAACAATGAGAAGGTGTATTATCCCAACTCAGTTTTGGCAACCAAGCCCATCACTAACTACTACAGAAGTCCATACATGAGCGACACAATCGAATTCTCGATCGGTTTCACGACACCACTAGAGAGGATTGGAGCCATGAAAGAGAGAATAAAAAGGTATTTGGAGAAGAATCCACAACACTGGTATCCAAATCATAGTGTGGTGGTGAAAGAGATCGAAAACGTGAATAAGATTAAGATCGCTCTTTATACGAATCACACGATGAATTTTCAAGACTGGAGTGAGAAGAACCGACGAAGATCCGAGCTCTTGCTGGAGCTGAAGAAAATTTTTGAAGAACTGAAGATCAACTACAATCTTCTGCCTCAAACAGTTCATCTCTTTCCAGTTCAGGAGCAGTAA 2139 41.0 MDVNGNKPLKSVQRSSSQKESENGGQVVVEISSVVSSKETRDEKGYSVPKPNRVGSQATEPTDSSIPSSNGNLTHRRSLKRSILSRPKSRFGEQPRYIDSDMFEENHSSLREQIGATSSRRSALVQTEKEDDEGIVKIEPLDKKHKKVKVKTLIKLVGVFCIIGCLVASLTVNHLKNRFFWGLRVWKWCLLATVILCGMIFTHWVVHIVVSLIEGNFLLKKKVLYFVHGLKKSVQVTIWLALVLVTWVSLFDRRNHRNSNFGITGKILDTITLTLVALLVGTFLWLIKTLLLKILASKFHKNQFFDRIQESLFHHHVLQTLLKSPLMEGDGSTAKFSCCQFTLESKKSEHKKVIDMGKIHQLQREKVTAWTMKVLIEAVSSSEMSISQMLDESYHNVADGEITDEMEIASAVACKILKNVALGKKFIQEEDLMKFMVKEEIDLVLPHFEVDETGKIDEKALRKWVVKVYQERKTLAHALNDTKTAVKQLNNLVTALLIIVTAVIWLLLMEIATSKVLVFLLSQLAVAAFMFGNSCKTAFEALIFVFVMHPFDVGDRCAVDGVQLLVEEMNILTTVFLKLNNEKVYYPNSVLATKPITNYYRSPYMSDTIEFSIGFTTPLERIGAMKERIKRYLEKNPQHWYPNHSVVVKEIENVNKIKIALYTNHTMNFQDWSEKNRRRSELLLELKKIFEELKINYNLLPQTVHLFPVQEQ 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26619947 26622807 + CcPI632755_05g017920.1 Cco05g1792 179420

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1792 712 FunFam Predicted mechanosensitive ion channel 550 599 - -
Cco05g1792 712 PIRSF Memb_At2g17000 3 712 IPR016688 -
Cco05g1792 712 MobiDBLite consensus disorder prediction 8 35 - -
Cco05g1792 712 SUPERFAMILY Sm-like ribonucleoproteins 539 599 IPR010920 -
Cco05g1792 712 MobiDBLite consensus disorder prediction 52 78 - -
Cco05g1792 712 MobiDBLite consensus disorder prediction 1 93 - -
Cco05g1792 712 Gene3D - 550 599 IPR023408 -
Cco05g1792 712 Pfam Mechanosensitive ion channel, beta-domain 543 600 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Cco05g1792 712 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 33 706 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1792 K22048 - - csv:101216955 1027.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1792 Cco-Chr5:26619947 Cco06g0889 Cco-Chr6:11112469 6.40E-130 dispersed
Cco05g1792 Cco-Chr5:26619947 Cco05g1797 Cco-Chr5:26684067 5.00E-300 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g144 Blo01g01450 Blo12g01027 . Bda03g00130 . . Bma04g00265 . . . Cma01g01705 . . . . . . . . . . . . . Cla05g01618 Cam05g1731 Cec05g1736 Cco05g1792 Clacu05g1720 Cmu05g1604 Cre05g1731 Cone4ag1693 . . . Lsi04g01394 . . . . . . . . Bpe04g00114 . . . Cmo01g01806 . . . Car01g01323 . . Cpe02g00286 Bhi09g03090 . . . . . . . . . . . . . . . . Cme07g00186
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco05g0175 . 134 524 Mechanosensitive Ion Channel Family AT4G00290 67.5 4.4e-154 541.6
Cco08g1322 . 10 651 Mechanosensitive Ion Channel Family AT5G10490 58.1 6.3e-196 681.0
Cco10g0731 . 127 793 Mechanosensitive Ion Channel Family AT5G10490 56.0 9.5e-192 667.2
Cco08g1322 . 10 631 Mechanosensitive Ion Channel Family AT1G58200 56.7 4.4e-197 684.9
Cco10g0731 . 108 570 Mechanosensitive Ion Channel Family AT1G58200 65.5 2.2e-172 602.8
Cco02g1208 . 43 928 Mechanosensitive Ion Channel Family AT1G53470 55.0 7.4e-261 897.1
Cco02g0422 . 91 952 Mechanosensitive Ion Channel Family AT1G53470 51.1 1.0e-238 823.5
Cco02g1208 . 43 926 Mechanosensitive Ion Channel Family AT3G14810 53.5 5.8e-247 850.9
Cco02g1208 . 43 928 Mechanosensitive Ion Channel Family AT1G78610 58.6 8.1e-281 963.4
Cco02g0422 . 59 952 Mechanosensitive Ion Channel Family AT1G78610 55.4 3.5e-268 921.4
Cco02g1208 . 226 928 Mechanosensitive Ion Channel Family AT2G17000 61.6 2.4e-237 818.9
Cco02g0422 . 266 936 Mechanosensitive Ion Channel Family AT2G17000 58.2 1.2e-220 763.5
Cco02g1208 . 1 675 Mechanosensitive Ion Channel Family AT2G17010 50.6 4.9e-164 575.1
Cco05g1797 . 69 721 Mechanosensitive Ion Channel Family AT5G19520 53.3 1.2e-184 643.7
Cco05g1797 . 64 721 Mechanosensitive Ion Channel Family AT5G12080 58.3 5.8e-203 704.5
Cco03g1576 . 58 749 Mechanosensitive Ion Channel Family AT5G12080 53.8 6.7e-199 691.0
Cco05g1792 . 69 706 Mechanosensitive Ion Channel Family AT5G12080 50.4 2.4e-164 576.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002739 1 4 1 1 1 2 2 2 2 3 2 2 1 3 3 1 2 3 1 2 3 1 0 2 2 2 1 6 1 0 57