Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1792 ATGGATGTGAATGGCAATAAACCTCTGAAATCTGTTCAAAGAAGTTCTTCTCAGAAGGAAAGTGAAAATGGAGGCCAAGTTGTGGTTGAAATTAGCAGCGTTGTTTCTTCCAAAGAAACCAGAGATGAAAAGGGCTACTCTGTGCCGAAGCCAAACAGAGTCGGTTCGCAGGCCACAGAGCCGACCGATTCGAGCATCCCCAGTTCAAATGGAAACCTCACGCACAGAAGATCTCTCAAAAGATCAATCCTGTCAAGACCCAAATCAAGATTTGGGGAACAGCCACGTTACATCGATTCAGATATGTTTGAGGAGAATCATTCGTCGTTGAGAGAACAAATCGGTGCAACTTCATCCAGAAGATCTGCTCTGGTCCAAACTGAGAAAGAAGATGATGAGGGAATCGTCAAGATAGAGCCGTTGGACAAAAAGCACAAGAAAGTGAAGGTGAAGACATTGATTAAGTTAGTTGGAGTTTTTTGCATAATTGGTTGCTTGGTGGCTAGTTTGACTGTTAACCATTTGAAGAATCGCTTCTTTTGGGGATTGAGGGTTTGGAAATGGTGTTTACTTGCTACTGTGATTTTGTGTGGAATGATATTTACTCATTGGGTTGTGCATATTGTTGTCAGTTTGATTGAGGGGAACTTTTTGCTTAAGAAAAAAGTGCTTTATTTTGTTCATGGATTGAAGAAGAGTGTCCAAGTGACCATTTGGTTGGCATTGGTTCTTGTAACATGGGTGTCACTGTTCGATCGGAGAAACCATAGGAATTCTAATTTTGGAATCACTGGGAAGATTTTGGATACTATTACATTGACTCTGGTAGCCCTTCTTGTAGGGACATTCCTGTGGTTGATAAAAACATTGTTGTTGAAAATACTGGCCTCCAAGTTCCATAAGAACCAATTTTTCGACAGAATTCAGGAATCCCTTTTCCATCATCATGTTCTACAAACCCTCTTGAAGTCTCCATTAATGGAGGGGGATGGAAGTACTGCCAAGTTCAGCTGTTGTCAATTTACTTTGGAGAGTAAAAAATCAGAACATAAGAAGGTGATTGACATGGGAAAGATTCACCAGCTGCAGCGAGAGAAGGTAACCGCTTGGACAATGAAGGTGTTGATCGAGGCAGTTTCAAGTTCGGAGATGTCGATCTCACAAATGCTCGATGAAAGCTACCACAATGTTGCTGATGGTGAGATCACTGATGAAATGGAAATTGCCAGTGCCGTTGCCTGCAAGATCTTAAAAAATGTTGCTCTTGGAAAAAAGTTCATACAAGAAGAGGATCTTATGAAATTCATGGTCAAAGAAGAAATTGATCTTGTGTTACCACACTTTGAGGTAGATGAGACAGGGAAGATTGATGAGAAAGCTCTAAGAAAATGGGTGGTGAAGGTTTATCAAGAGAGGAAAACTCTAGCACATGCCTTGAATGACACTAAAACAGCTGTTAAGCAATTGAATAATTTGGTAACAGCGCTTCTTATAATAGTAACCGCTGTTATTTGGCTTCTGTTGATGGAAATTGCTACATCCAAAGTACTCGTTTTCCTTCTATCTCAACTTGCAGTGGCAGCTTTCATGTTTGGAAACTCTTGCAAGACTGCATTTGAAGCTCTAATCTTTGTGTTTGTTATGCATCCATTTGATGTTGGGGACCGTTGTGCCGTCGATGGCGTCCAGCTGTTGGTTGAAGAAATGAACATCTTGACGACAGTCTTCTTGAAACTCAACAATGAGAAGGTGTATTATCCCAACTCAGTTTTGGCAACCAAGCCCATCACTAACTACTACAGAAGTCCATACATGAGCGACACAATCGAATTCTCGATCGGTTTCACGACACCACTAGAGAGGATTGGAGCCATGAAAGAGAGAATAAAAAGGTATTTGGAGAAGAATCCACAACACTGGTATCCAAATCATAGTGTGGTGGTGAAAGAGATCGAAAACGTGAATAAGATTAAGATCGCTCTTTATACGAATCACACGATGAATTTTCAAGACTGGAGTGAGAAGAACCGACGAAGATCCGAGCTCTTGCTGGAGCTGAAGAAAATTTTTGAAGAACTGAAGATCAACTACAATCTTCTGCCTCAAACAGTTCATCTCTTTCCAGTTCAGGAGCAGTAA 2139 41.0 MDVNGNKPLKSVQRSSSQKESENGGQVVVEISSVVSSKETRDEKGYSVPKPNRVGSQATEPTDSSIPSSNGNLTHRRSLKRSILSRPKSRFGEQPRYIDSDMFEENHSSLREQIGATSSRRSALVQTEKEDDEGIVKIEPLDKKHKKVKVKTLIKLVGVFCIIGCLVASLTVNHLKNRFFWGLRVWKWCLLATVILCGMIFTHWVVHIVVSLIEGNFLLKKKVLYFVHGLKKSVQVTIWLALVLVTWVSLFDRRNHRNSNFGITGKILDTITLTLVALLVGTFLWLIKTLLLKILASKFHKNQFFDRIQESLFHHHVLQTLLKSPLMEGDGSTAKFSCCQFTLESKKSEHKKVIDMGKIHQLQREKVTAWTMKVLIEAVSSSEMSISQMLDESYHNVADGEITDEMEIASAVACKILKNVALGKKFIQEEDLMKFMVKEEIDLVLPHFEVDETGKIDEKALRKWVVKVYQERKTLAHALNDTKTAVKQLNNLVTALLIIVTAVIWLLLMEIATSKVLVFLLSQLAVAAFMFGNSCKTAFEALIFVFVMHPFDVGDRCAVDGVQLLVEEMNILTTVFLKLNNEKVYYPNSVLATKPITNYYRSPYMSDTIEFSIGFTTPLERIGAMKERIKRYLEKNPQHWYPNHSVVVKEIENVNKIKIALYTNHTMNFQDWSEKNRRRSELLLELKKIFEELKINYNLLPQTVHLFPVQEQ 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26619947 26622807 + CcPI632755_05g017920.1 Cco05g1792 179420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1792 712 FunFam Predicted mechanosensitive ion channel 550 599 - -
Cco05g1792 712 PIRSF Memb_At2g17000 3 712 IPR016688 -
Cco05g1792 712 MobiDBLite consensus disorder prediction 8 35 - -
Cco05g1792 712 SUPERFAMILY Sm-like ribonucleoproteins 539 599 IPR010920 -
Cco05g1792 712 MobiDBLite consensus disorder prediction 52 78 - -
Cco05g1792 712 MobiDBLite consensus disorder prediction 1 93 - -
Cco05g1792 712 Gene3D - 550 599 IPR023408 -
Cco05g1792 712 Pfam Mechanosensitive ion channel, beta-domain 543 600 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Cco05g1792 712 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 33 706 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1792 Cco-Chr5:26619947 Cco06g0889 Cco-Chr6:11112469 6.40E-130 dispersed
Cco05g1792 Cco-Chr5:26619947 Cco05g1797 Cco-Chr5:26684067 5.00E-300 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1792 K22048 - csv:101216955 1027.31