Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1797 ATGGATGTGAATGCCAATAAACCTTTGCAATTTGTTCGAAGAAGTTCGTCTCAGAAGGAAACTGAAAATGGAGGTCAAGTTATGGTTGAGATTAGCAGCGTTGAAAATGGCTACTCTGTACCGAAGCAAAACAGAGTCGATTTGCAGATCAAAGAGCCGACCGATTCAAGCATTGGCTATGGCTACGATTCACCACTCGCTCCCACTGCGAATAAGCCACCGAAAATCCCTAGTTCAAATGGAACCCTCACGCCCAGAAAATCTCTCAGAAGATCAATCCTCTCGAAACCCAAATCCAGATTTGGGGACCAGCCTGGTTATATCGATTCAGACATGTTTGAGGAGAATCATTTGTCGTTGAGAGATCAAATCGGTGCAACTTCATCCAGAAGCTCTACTCTCAACACGCCGAAGGCTCAACCTGAGGAAGAAGATGATGAGGAAATCTTCAAGATAGAGCAGTTGAATAATAAGCACAAGAAAGTGAAGGTGAAGACAGTGATTAAGTGGGTTGGAGTTTTTTGCATAATTGGTTGCTTGGTGGCTAGCTTGACTGTTAACCCTTTGAAGAATCGCTTCCTTTGGGGTTTAAGGGTTTGGAAATGGTGTTTACTTGCTACTGTGATTTTGTGTGGAATGATATTTACTCATTGGGTTATGAATGTGATTGTATTTTTGATCGAGAGGAACTTTTTGCTTAAGAAAAAAGTACTTTATTTTGTTCATGGGTTGAAGAAGAGTGTTCAAGTGACCCTTTGGTTGACATTGGTTCTTGTTACATGGGGGTCCTTGTTCGATCGGAGAAACCATACAATTCCGAGTTCGAGGATCACTACAAAGATTTTGGATGCTGTTACATGGACTCTGGTTAGCCTTCTCATAGGAGCATTCTTGTGGTTGGTAAAAACACTGTTGCTGAAAATACTGGCCTCTAAGTTCCATATGAACCGATTTTTCGACAGAATTCAGGAATCCATTTTCCATCATCATGTTCTACAAACTCTCTCAAGGCCTCCACTAATGGAGGGAGCTGAAATTACTCCCAAGTCCAGCAGTGGTAGACTGAGTTTGAAGAGTAAAAAATCAGACCGTAAAAAGGTGATTGACATGGGAAAGATTCACCAGCTGAAGCGAGAGAAGGTTTCAGCTTGGACAATGAAGGTATTGGTTGATGCAGTTACTAGTTCAGAGATGTCGATCTCACAAACACTTGATGAAAGCTACCAAGATGTTGCTGATGGCGAGATCACAGATGAGATGGAAGTTGCCAGAGCCGCTGCTTACAAGATATTCAACAATGTTGCTCTTCATGGAAACAAGTTCATAGAGGAAGAGGATCTTCTGAGATTCATGATCAAAGAAGAAGTTGATCTTGTGTTACCACACTTTGAGGTAGATGAGACAAGGAAAATTGACAGGAAAGCTCTAACAAATTGGGTGGTGAAGGTTTATCAAGGGAGAAAAACTCTAGCACATGCCTTGAAAGACACTAAAACAGCTGTGAGGCAATTGAATAATTTAGTAACAGCGCTTCTTATAATAGTAACCGCTGTTATTTGGCTTCTGTTGATGGAAATTGCTACTACCAAAGTACTTGTCTTCCTTCTAACTCAACTTGCAGTGGCAGCTTTCATGTTTGGAAACTCTTGCAAGACTGCATTTGAAGCTCTAATCTTTGTCTTTGTTATGCATCCATTTGATGTTGGTGACCGTTGTGTTGTCGATGGCGTCCAGCTGTTGGTTGAAGAAATGAACATCTTGACGACAGTCTTCTTGAAACTCAACAATGAGAAGGTGTATTATCCCAACTCAGTTTTGGCAACAAAGCCCATCACTAACTACTACAGAAGTCCAGACATGGGCGACACTGTTGAATTCTCAATCGGTTTTGCAACGCCATTGGAGAGGATTGGGCTCTTGAAAGAGAAAATAAAGAGGTATTTGGAGAAGAATCCACAACATTGGTATCCAAATCATAGTGTGGTGGTGCAGGAGATCGAAAGCGTGAATAAGATAAAGATCGCTCTTTATACGAACCACACCATGAATTTTCAAGACTGGACTGAGAAGAACCGACGAAGAACCGAGCTCGTGATGGAGTTGAAGAGAATTTTTGAAGAACTGAAGATCAACTACAATCTTCTGCCTCAAACAGTACATCTCTTCCCAGTTGAGGGCACTGAAGTCTACAGAAGATCTTGA 2202 41.55 MDVNANKPLQFVRRSSSQKETENGGQVMVEISSVENGYSVPKQNRVDLQIKEPTDSSIGYGYDSPLAPTANKPPKIPSSNGTLTPRKSLRRSILSKPKSRFGDQPGYIDSDMFEENHLSLRDQIGATSSRSSTLNTPKAQPEEEDDEEIFKIEQLNNKHKKVKVKTVIKWVGVFCIIGCLVASLTVNPLKNRFLWGLRVWKWCLLATVILCGMIFTHWVMNVIVFLIERNFLLKKKVLYFVHGLKKSVQVTLWLTLVLVTWGSLFDRRNHTIPSSRITTKILDAVTWTLVSLLIGAFLWLVKTLLLKILASKFHMNRFFDRIQESIFHHHVLQTLSRPPLMEGAEITPKSSSGRLSLKSKKSDRKKVIDMGKIHQLKREKVSAWTMKVLVDAVTSSEMSISQTLDESYQDVADGEITDEMEVARAAAYKIFNNVALHGNKFIEEEDLLRFMIKEEVDLVLPHFEVDETRKIDRKALTNWVVKVYQGRKTLAHALKDTKTAVRQLNNLVTALLIIVTAVIWLLLMEIATTKVLVFLLTQLAVAAFMFGNSCKTAFEALIFVFVMHPFDVGDRCVVDGVQLLVEEMNILTTVFLKLNNEKVYYPNSVLATKPITNYYRSPDMGDTVEFSIGFATPLERIGLLKEKIKRYLEKNPQHWYPNHSVVVQEIESVNKIKIALYTNHTMNFQDWTEKNRRRTELVMELKRIFEELKINYNLLPQTVHLFPVEGTEVYRRS 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26684067 26686907 + CcPI632755_05g017970.1 Cco05g1797 179425

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1797 733 SUPERFAMILY Sm-like ribonucleoproteins 554 614 IPR010920 -
Cco05g1797 733 PIRSF Memb_At2g17000 6 733 IPR016688 -
Cco05g1797 733 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 64 721 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
Cco05g1797 733 MobiDBLite consensus disorder prediction 73 89 - -
Cco05g1797 733 MobiDBLite consensus disorder prediction 1 107 - -
Cco05g1797 733 Pfam Mechanosensitive ion channel, beta-domain 558 615 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Cco05g1797 733 MobiDBLite consensus disorder prediction 127 147 - -
Cco05g1797 733 FunFam Predicted mechanosensitive ion channel 565 614 - -
Cco05g1797 733 Gene3D - 565 614 IPR023408 -
Cco05g1797 733 MobiDBLite consensus disorder prediction 9 43 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1797 K22048 - - csv:101217197 1157.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1576 Cco-Chr3:30399368 Cco05g1797 Cco-Chr5:26684067 3.10E-183 dispersed
Cco05g1797 Cco-Chr5:26684067 Cco06g0889 Cco-Chr6:11112469 8.30E-149 dispersed
Cco05g1792 Cco-Chr5:26619947 Cco05g1797 Cco-Chr5:26684067 5.00E-300 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco05g0175 . 134 524 Mechanosensitive Ion Channel Family AT4G00290 67.5 4.4e-154 541.6
Cco08g1322 . 10 651 Mechanosensitive Ion Channel Family AT5G10490 58.1 6.3e-196 681.0
Cco10g0731 . 127 793 Mechanosensitive Ion Channel Family AT5G10490 56.0 9.5e-192 667.2
Cco08g1322 . 10 631 Mechanosensitive Ion Channel Family AT1G58200 56.7 4.4e-197 684.9
Cco10g0731 . 108 570 Mechanosensitive Ion Channel Family AT1G58200 65.5 2.2e-172 602.8
Cco02g1208 . 43 928 Mechanosensitive Ion Channel Family AT1G53470 55.0 7.4e-261 897.1
Cco02g0422 . 91 952 Mechanosensitive Ion Channel Family AT1G53470 51.1 1.0e-238 823.5
Cco02g1208 . 43 926 Mechanosensitive Ion Channel Family AT3G14810 53.5 5.8e-247 850.9
Cco02g1208 . 43 928 Mechanosensitive Ion Channel Family AT1G78610 58.6 8.1e-281 963.4
Cco02g0422 . 59 952 Mechanosensitive Ion Channel Family AT1G78610 55.4 3.5e-268 921.4
Cco02g1208 . 226 928 Mechanosensitive Ion Channel Family AT2G17000 61.6 2.4e-237 818.9
Cco02g0422 . 266 936 Mechanosensitive Ion Channel Family AT2G17000 58.2 1.2e-220 763.5
Cco02g1208 . 1 675 Mechanosensitive Ion Channel Family AT2G17010 50.6 4.9e-164 575.1
Cco05g1797 . 69 721 Mechanosensitive Ion Channel Family AT5G19520 53.3 1.2e-184 643.7
Cco05g1797 . 64 721 Mechanosensitive Ion Channel Family AT5G12080 58.3 5.8e-203 704.5
Cco03g1576 . 58 749 Mechanosensitive Ion Channel Family AT5G12080 53.8 6.7e-199 691.0
Cco05g1792 . 69 706 Mechanosensitive Ion Channel Family AT5G12080 50.4 2.4e-164 576.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002739 1 4 1 1 1 2 2 2 2 3 2 2 1 3 3 1 2 3 1 2 3 1 0 2 2 2 1 6 1 0 57