Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1797 ATGGATGTGAATGCCAATAAACCTTTGCAATTTGTTCGAAGAAGTTCGTCTCAGAAGGAAACTGAAAATGGAGGTCAAGTTATGGTTGAGATTAGCAGCGTTGAAAATGGCTACTCTGTACCGAAGCAAAACAGAGTCGATTTGCAGATCAAAGAGCCGACCGATTCAAGCATTGGCTATGGCTACGATTCACCACTCGCTCCCACTGCGAATAAGCCACCGAAAATCCCTAGTTCAAATGGAACCCTCACGCCCAGAAAATCTCTCAGAAGATCAATCCTCTCGAAACCCAAATCCAGATTTGGGGACCAGCCTGGTTATATCGATTCAGACATGTTTGAGGAGAATCATTTGTCGTTGAGAGATCAAATCGGTGCAACTTCATCCAGAAGCTCTACTCTCAACACGCCGAAGGCTCAACCTGAGGAAGAAGATGATGAGGAAATCTTCAAGATAGAGCAGTTGAATAATAAGCACAAGAAAGTGAAGGTGAAGACAGTGATTAAGTGGGTTGGAGTTTTTTGCATAATTGGTTGCTTGGTGGCTAGCTTGACTGTTAACCCTTTGAAGAATCGCTTCCTTTGGGGTTTAAGGGTTTGGAAATGGTGTTTACTTGCTACTGTGATTTTGTGTGGAATGATATTTACTCATTGGGTTATGAATGTGATTGTATTTTTGATCGAGAGGAACTTTTTGCTTAAGAAAAAAGTACTTTATTTTGTTCATGGGTTGAAGAAGAGTGTTCAAGTGACCCTTTGGTTGACATTGGTTCTTGTTACATGGGGGTCCTTGTTCGATCGGAGAAACCATACAATTCCGAGTTCGAGGATCACTACAAAGATTTTGGATGCTGTTACATGGACTCTGGTTAGCCTTCTCATAGGAGCATTCTTGTGGTTGGTAAAAACACTGTTGCTGAAAATACTGGCCTCTAAGTTCCATATGAACCGATTTTTCGACAGAATTCAGGAATCCATTTTCCATCATCATGTTCTACAAACTCTCTCAAGGCCTCCACTAATGGAGGGAGCTGAAATTACTCCCAAGTCCAGCAGTGGTAGACTGAGTTTGAAGAGTAAAAAATCAGACCGTAAAAAGGTGATTGACATGGGAAAGATTCACCAGCTGAAGCGAGAGAAGGTTTCAGCTTGGACAATGAAGGTATTGGTTGATGCAGTTACTAGTTCAGAGATGTCGATCTCACAAACACTTGATGAAAGCTACCAAGATGTTGCTGATGGCGAGATCACAGATGAGATGGAAGTTGCCAGAGCCGCTGCTTACAAGATATTCAACAATGTTGCTCTTCATGGAAACAAGTTCATAGAGGAAGAGGATCTTCTGAGATTCATGATCAAAGAAGAAGTTGATCTTGTGTTACCACACTTTGAGGTAGATGAGACAAGGAAAATTGACAGGAAAGCTCTAACAAATTGGGTGGTGAAGGTTTATCAAGGGAGAAAAACTCTAGCACATGCCTTGAAAGACACTAAAACAGCTGTGAGGCAATTGAATAATTTAGTAACAGCGCTTCTTATAATAGTAACCGCTGTTATTTGGCTTCTGTTGATGGAAATTGCTACTACCAAAGTACTTGTCTTCCTTCTAACTCAACTTGCAGTGGCAGCTTTCATGTTTGGAAACTCTTGCAAGACTGCATTTGAAGCTCTAATCTTTGTCTTTGTTATGCATCCATTTGATGTTGGTGACCGTTGTGTTGTCGATGGCGTCCAGCTGTTGGTTGAAGAAATGAACATCTTGACGACAGTCTTCTTGAAACTCAACAATGAGAAGGTGTATTATCCCAACTCAGTTTTGGCAACAAAGCCCATCACTAACTACTACAGAAGTCCAGACATGGGCGACACTGTTGAATTCTCAATCGGTTTTGCAACGCCATTGGAGAGGATTGGGCTCTTGAAAGAGAAAATAAAGAGGTATTTGGAGAAGAATCCACAACATTGGTATCCAAATCATAGTGTGGTGGTGCAGGAGATCGAAAGCGTGAATAAGATAAAGATCGCTCTTTATACGAACCACACCATGAATTTTCAAGACTGGACTGAGAAGAACCGACGAAGAACCGAGCTCGTGATGGAGTTGAAGAGAATTTTTGAAGAACTGAAGATCAACTACAATCTTCTGCCTCAAACAGTACATCTCTTCCCAGTTGAGGGCACTGAAGTCTACAGAAGATCTTGA 2202 41.55 MDVNANKPLQFVRRSSSQKETENGGQVMVEISSVENGYSVPKQNRVDLQIKEPTDSSIGYGYDSPLAPTANKPPKIPSSNGTLTPRKSLRRSILSKPKSRFGDQPGYIDSDMFEENHLSLRDQIGATSSRSSTLNTPKAQPEEEDDEEIFKIEQLNNKHKKVKVKTVIKWVGVFCIIGCLVASLTVNPLKNRFLWGLRVWKWCLLATVILCGMIFTHWVMNVIVFLIERNFLLKKKVLYFVHGLKKSVQVTLWLTLVLVTWGSLFDRRNHTIPSSRITTKILDAVTWTLVSLLIGAFLWLVKTLLLKILASKFHMNRFFDRIQESIFHHHVLQTLSRPPLMEGAEITPKSSSGRLSLKSKKSDRKKVIDMGKIHQLKREKVSAWTMKVLVDAVTSSEMSISQTLDESYQDVADGEITDEMEVARAAAYKIFNNVALHGNKFIEEEDLLRFMIKEEVDLVLPHFEVDETRKIDRKALTNWVVKVYQGRKTLAHALKDTKTAVRQLNNLVTALLIIVTAVIWLLLMEIATTKVLVFLLTQLAVAAFMFGNSCKTAFEALIFVFVMHPFDVGDRCVVDGVQLLVEEMNILTTVFLKLNNEKVYYPNSVLATKPITNYYRSPDMGDTVEFSIGFATPLERIGLLKEKIKRYLEKNPQHWYPNHSVVVQEIESVNKIKIALYTNHTMNFQDWTEKNRRRTELVMELKRIFEELKINYNLLPQTVHLFPVEGTEVYRRS 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26684067 26686907 + CcPI632755_05g017970.1 Cco05g1797 179425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1797 733 SUPERFAMILY Sm-like ribonucleoproteins 554 614 IPR010920 -
Cco05g1797 733 PIRSF Memb_At2g17000 6 733 IPR016688 -
Cco05g1797 733 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 64 721 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
Cco05g1797 733 MobiDBLite consensus disorder prediction 73 89 - -
Cco05g1797 733 MobiDBLite consensus disorder prediction 1 107 - -
Cco05g1797 733 Pfam Mechanosensitive ion channel, beta-domain 558 615 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Cco05g1797 733 MobiDBLite consensus disorder prediction 127 147 - -
Cco05g1797 733 FunFam Predicted mechanosensitive ion channel 565 614 - -
Cco05g1797 733 Gene3D - 565 614 IPR023408 -
Cco05g1797 733 MobiDBLite consensus disorder prediction 9 43 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1576 Cco-Chr3:30399368 Cco05g1797 Cco-Chr5:26684067 3.10E-183 dispersed
Cco05g1797 Cco-Chr5:26684067 Cco06g0889 Cco-Chr6:11112469 8.30E-149 dispersed
Cco05g1792 Cco-Chr5:26619947 Cco05g1797 Cco-Chr5:26684067 5.00E-300 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1797 K22048 - csv:101217197 1157.13