Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1801 ATGACGATTTGGTGCTGCTTATGCTTCACCGTTGGAGAAGAAGACGAAAGGGAAAGGGAAGAAGAACTGAAGAAGGAAGGTGAAATGAAACCCATGATGCGTGAGGAGGTTTTTGAGAACCAGGACGACTCTGATCGCATTGTGCGAAATGGTGATGATTCTCAAGGGAGTAATCCACTTCCGATTGCTGTAGATGATGCGCCTGACCGTCATGACGGTGATCGACTTAGATTGTTTGAGGATATGGTCAGAGCAATGCACGATGGCGCCGATGGTGGTGGTGCTCATTGGGACGATGAGCTGCGCGCCGGCGGCGGCGGCGGGGCTGTTAATCCCTGGAATTTTTCTTTTGGAATTCTGCATCAATCTGAGGGAGGAGAAAGTAGTAGCGCCTCGGCTTTGTCCTTGTCTTCTACGGTGGAGACTTCTAATGAGGAACGCGATCGGGATGCCAACCATAAGCGCGCTAAAGTTCTCTCCAAATACATTGAGAGCTCATTTGCAACTCCATGGCCTTTGGGTGCTGGAAATCCTATGAGAGATTATGATTTTATTCACGGATCATCTTCAATTATGAGTAGGAATGAATTTCTATACCATGCTTCTACATCAAGCAGAGTTGACGAAGATTTGGAATCTAGTTTTGGTAGAGATGATGGGATCAATGAGAATGACACCTGTAAATCAGAAGGATTTGAAGTAAGAATGGATCTTACAGATGATTTACTGCATATGGTTTTCTCTTTCTTGGATCACATCAATCTTTGTCGAGCTGCTATAGTCTGCAGGCAGTGGCAAGCTGCTAGTGCTCATGAAGATTTCTGGAGGTGTTTGAATTTTGAAAATAGGAACATATCCATGGAACAATTCGAGGATATGTGTGGAAGATATCCAAATGCCACAGAGGTCAATATCTCTGGTGTACCTGCCGTTCACTTGCTTGCCATGAAAGCAGTTTCTTCTTTAAGACATCTGGAGGTTTTAACTCTGGGGAGAGGACAACTGGCAGATAACTTTTTTCACGCCCTGACTGATTGCCATTTATTGAAGAGTTTGACTGTCAATGATTCTACGCTGGTTAATGTTACACAAGAGATACCTATAAGCCATGATAGACTGCGTCATCTTCATCTTACTAAATGTCGTGTTATACGCATATCTGTTAGATGTCCACAACTTGAAACATTGTCGTTGAAGCGCAGCAACATGGCACAGGCTGTTCTTAACTGCCCCCTTCTTCGGGACCTGGATATAGGCTCTTGCCACAAGCTCTCAGATGCTGCAATTCGCTCAGCTGCTATTTCATGCCCACAGTTGGAATCTCTTGATATGTCTAATTGTTCATGTGTTAGCGATGAGACATTACGTGAAATTTCTGCAAACTGCCCGAATCTCCAGCTTCTGAATGCATCATACTGCCCAAATATATCTTTGGAGTCTGTAAGACTGACAATGCTGACCGTGCTTAAGCTTCACAGCTGTGAGGGCATCACATCAGCTTCAATGACTGCAATATCTAGTAGTTCTGGTTTGAAGGTTTTGGAGCTTGATAATTGCAGTCTTTTGACTTCTGTTTCTCTGGATCTTCCCCATTTACAGAATATCAGACTTGTCCATTGCCGCAAATTCTCAGACTTGAGTTTACAGAGTGTTAAATTATCATCCATAATGGTCTCTAACTGTCCATCACTTCACCGGATCAACATCACTTCCAATTTACTTCAAAAATTGGTGTTGAAGAAACAAGAGAGCTTGGCCAAATTGGTTTTGCAGTGCCCTAGTCTGCAAGATGTGGACCTCACAGACTGTGAATCACTAACGAATTCTATTTGTGAGGTTTTTAGTGATGGTGGTGGATGCCCTATGTTGAAATCACTTGTTCTTGATAACTGTGAGAGTCTGACTGCTGTTCGATTCTGTAGCAGTTCTTTAGGCAGTCTTTCCCTTGTTGGTTGCCGGGCAATCACTTCACTTGAACTTCAATGCCCTAATCTCGAACAGGTTTCTTTAGATGGCTGTGATCATCTTGAGAGAGCATCATTTTCCCCGGTTGGTCTGCGGTCACTAAACCTGGGAATCTGTCCCAAATTGAATGAATTAAAACTTGAGGCCCCTCGGATGGATTTACTTGAGTTAAAAGGTTGTGGTGGATTGTCTGAAGCAGCCATCAATTGTCCTCGTCTGACATCGTTGGATGCTTCCTTTTGTGGCCAACTGAAAGATGAGTGTTTGTCTGCGACTACTGCCTCATGTCCACAGATTGAGTCGTTAATACTGATGTCATGTCCATCGGTTGGTTCAGAGGGGCTTTACTCTCTGCGATGCCTTCTGAAGTTGGTTGTGCTTGATTTATCATATACCTTTTTGATGAGCTTGCAGCCAGTCTTCGAGTCTTGTATACAACTTAAGGTATTGAAACTACAAGCATGCAAGTATTTAACCGACTCATCGCTAGAGCCTCTTTATAAGGAAGACGCTCTTCCAGCTCTTCAAGAGTTAGACTTATCTTACGGGACTCTTTGTCAGTCTGCCATAGAAGAGCTTCTTGCTTGTTGCACTCACTTAACTCATGTGAGCTTAAATGGGTGTGTGAACATGCATGATCTAAATTGGGGTTATAGCATTGGACAGCTTTCGTTGTCCAGCATCCCAATTCCTCTTGGTCAGGCCACTCTTGATGAGATTGAGGAACCAGTTGCACAGCCAAACCGTTTGTTACAGAACCTTAACTGTGTAGGTTGTCAGAATATTAGAAAGGTTCTCATTCCTCCAGCTGCTCGTTGTTTTCATTTATCATCATTAAACCTATCCTTGTCTTCAAATCTCAAGGAAGTTGACGTCTCTTGTTACAACCTATGCTTTCTTAATTTGAGTAATTGCTGCTCTTTGGAAGTTCTAAAACTTGACTGCCCGCGGTTAACCAGTCTCTTTCTTCAGTCTTGCAACATTGAAGAAGAAGTGGTTGTGGCTGCGGTATCGAGATGTAGCATGCTCGAGACGTTGGATGTCCGCTTATGTCCAAAGATCTCCTCTATTAGCATGGTACAACTGCGTATTGCTTGTCCAAGTTTGAAGCGGATCTTCAGCACCGATCTGTTTGGTTTGGGCCCTGAAGAAGCCTTCCAGTTTGTGGTTACTGGCTCTGATTGTAAGTCGAATTTCTTCTCACACCTACTTGCTTATTCTTCTTACTTCAACGGCCGTTTCTGTTTCTTGAAGCTTATGATTTCAAGTTCTTCTGTATATACTGCATTTGTTGGTTCTAGATTTGAAGATTCTCTTCTGGCAAATGTGACTGATAATCCTGCTGATAAACTAGTAGCTGTGCTTAACAAGAACAGAACTGCTAATAAGCTATCTGCTCTAAAAGACAATCCTGGCTTGGCATGCCTTGCTCTTCAGTATATTAAGGCATACCAAGGGAAATGTGAAGCAGTTGGAGGTCCCGACGGAATGAAGCCTCCAAATTCTGCATTCGTTGAAACTTTTGCTCCTAACTGTGGAGTTGTTGTCTCGTCTCTCGCTCCAATCACGGGGCGGTTGCTTGGTTGCCAGTCTAAATATGTACATGCTCCTGAAGCATTTTCTGATGTTTTGATGGTGAATAACAAGAGCTTGGAAATTCTCTACTACAAGAATAACACAGAAGTTGGAGCTGCTGTGACTGGTACGGATGGGGGTTCTCCTTACTTTTGGTGTGTGTTGTTCAGCAATGGCAGCATCTCTAACAGCTTTGCCTTTGAGGGAGGAGTGGCCAAGTTAACGCGCCCCGGTTGCTACAGTGGGGCCAATGACCAGTGCAGCGGAGCCGATAGCCAGTTTTCTACCATGCGTATATTGTTATCAGCCTTGACATCTTTGCTTGCCATGGCATATGCCTTTGGTTTATGA 3891 43.74 MTIWCCLCFTVGEEDEREREEELKKEGEMKPMMREEVFENQDDSDRIVRNGDDSQGSNPLPIAVDDAPDRHDGDRLRLFEDMVRAMHDGADGGGAHWDDELRAGGGGGAVNPWNFSFGILHQSEGGESSSASALSLSSTVETSNEERDRDANHKRAKVLSKYIESSFATPWPLGAGNPMRDYDFIHGSSSIMSRNEFLYHASTSSRVDEDLESSFGRDDGINENDTCKSEGFEVRMDLTDDLLHMVFSFLDHINLCRAAIVCRQWQAASAHEDFWRCLNFENRNISMEQFEDMCGRYPNATEVNISGVPAVHLLAMKAVSSLRHLEVLTLGRGQLADNFFHALTDCHLLKSLTVNDSTLVNVTQEIPISHDRLRHLHLTKCRVIRISVRCPQLETLSLKRSNMAQAVLNCPLLRDLDIGSCHKLSDAAIRSAAISCPQLESLDMSNCSCVSDETLREISANCPNLQLLNASYCPNISLESVRLTMLTVLKLHSCEGITSASMTAISSSSGLKVLELDNCSLLTSVSLDLPHLQNIRLVHCRKFSDLSLQSVKLSSIMVSNCPSLHRINITSNLLQKLVLKKQESLAKLVLQCPSLQDVDLTDCESLTNSICEVFSDGGGCPMLKSLVLDNCESLTAVRFCSSSLGSLSLVGCRAITSLELQCPNLEQVSLDGCDHLERASFSPVGLRSLNLGICPKLNELKLEAPRMDLLELKGCGGLSEAAINCPRLTSLDASFCGQLKDECLSATTASCPQIESLILMSCPSVGSEGLYSLRCLLKLVVLDLSYTFLMSLQPVFESCIQLKVLKLQACKYLTDSSLEPLYKEDALPALQELDLSYGTLCQSAIEELLACCTHLTHVSLNGCVNMHDLNWGYSIGQLSLSSIPIPLGQATLDEIEEPVAQPNRLLQNLNCVGCQNIRKVLIPPAARCFHLSSLNLSLSSNLKEVDVSCYNLCFLNLSNCCSLEVLKLDCPRLTSLFLQSCNIEEEVVVAAVSRCSMLETLDVRLCPKISSISMVQLRIACPSLKRIFSTDLFGLGPEEAFQFVVTGSDCKSNFFSHLLAYSSYFNGRFCFLKLMISSSSVYTAFVGSRFEDSLLANVTDNPADKLVAVLNKNRTANKLSALKDNPGLACLALQYIKAYQGKCEAVGGPDGMKPPNSAFVETFAPNCGVVVSSLAPITGRLLGCQSKYVHAPEAFSDVLMVNNKSLEILYYKNNTEVGAAVTGTDGGSPYFWCVLFSNGSISNSFAFEGGVAKLTRPGCYSGANDQCSGADSQFSTMRILLSALTSLLAMAYAFGL 1296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26745347 26754450 + CcPI632755_05g018010.1 Cco05g1801 179429

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1801 1296 SUPERFAMILY L domain-like 718 1033 - -
Cco05g1801 1296 FunFam F-box/LRR-repeat protein 15 792 877 - -
Cco05g1801 1296 SMART LRR_CC_2 462 482 IPR006553 -
Cco05g1801 1296 SMART LRR_CC_2 483 508 IPR006553 -
Cco05g1801 1296 SMART LRR_CC_2 410 435 IPR006553 -
Cco05g1801 1296 SMART LRR_CC_2 529 554 IPR006553 -
Cco05g1801 1296 SMART LRR_CC_2 662 692 IPR006553 -
Cco05g1801 1296 SMART LRR_CC_2 995 1020 IPR006553 -
Cco05g1801 1296 SMART LRR_CC_2 852 881 IPR006553 -
Cco05g1801 1296 SMART LRR_CC_2 799 824 IPR006553 -
Cco05g1801 1296 SMART LRR_CC_2 970 994 IPR006553 -
Cco05g1801 1296 SMART LRR_CC_2 620 658 IPR006553 -
Cco05g1801 1296 SMART LRR_CC_2 751 776 IPR006553 -
Cco05g1801 1296 SMART LRR_CC_2 592 617 IPR006553 -
Cco05g1801 1296 SMART LRR_CC_2 725 750 IPR006553 -
Cco05g1801 1296 SMART LRR_CC_2 436 461 IPR006553 -
Cco05g1801 1296 Pfam F-box-like 240 280 IPR001810 GO:0005515(InterPro)
Cco05g1801 1296 SUPERFAMILY F-box domain 237 268 IPR036047 GO:0005515(InterPro)
Cco05g1801 1296 SUPERFAMILY L domain-like 406 767 - -
Cco05g1801 1296 FunFam F-box/LRR-repeat protein 15 230 480 - -
Cco05g1801 1296 Gene3D Ribonuclease Inhibitor 483 659 IPR032675 -
Cco05g1801 1296 Gene3D Ribonuclease Inhibitor 231 482 IPR032675 -
Cco05g1801 1296 Gene3D Ribonuclease Inhibitor 874 1053 IPR032675 -
Cco05g1801 1296 MobiDBLite consensus disorder prediction 15 71 - -
Cco05g1801 1296 Gene3D Ribonuclease Inhibitor 696 792 IPR032675 -
Cco05g1801 1296 Gene3D Ribonuclease Inhibitor 793 872 IPR032675 -
Cco05g1801 1296 MobiDBLite consensus disorder prediction 15 50 - -
Cco05g1801 1296 MobiDBLite consensus disorder prediction 124 141 - -
Cco05g1801 1296 PANTHER OS10G0396666 PROTEIN 220 1028 - -
Cco05g1801 1296 SMART fbox_2 238 278 IPR001810 GO:0005515(InterPro)
Cco05g1801 1296 SUPERFAMILY RNI-like 258 478 - -
Cco05g1801 1296 CDD F-box_FBXO41 240 276 - -
Cco05g1801 1296 MobiDBLite consensus disorder prediction 124 153 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1801 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1801 Cco-Chr5:26745347 Cco06g0085 Cco-Chr6:806369 2.80E-35 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g163 . . . . Bpe02g01560 . . . . . . . Car09g00314 . . . . . . . . . . . Cla05g01627 Cam05g1736 Cec05g1744 Cco05g1801 Clacu05g1727 Cmu05g1612 Cre05g1740 . . . . Lsi04g01386 . . . . . Bda01g01347 . . . . . Sed05g1795 . Cmo09g00363 Cma09g00364 . . . . . Bhi09g03082 Tan01g3472 Cmetu07g0807 . . Mch11g0452 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004724 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 4 1 1 42