Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1804 ATGAATCAGGCTCTTGATGGGCCGTGGGCCCAGCTCTGCCAGATCCTCTGGCCATCCTTATCCAATGTTCCCATTTTACCCTCCCAGAAACGAAGAGAGAGAGAAAAAGGAAATGGGTTTAAGGGTTGCTGTGTGATGTTGCAGGTTCTTGTTACTAACCAACCATGGAAAGTGCAACAATGTAAGATGAAGTCTGTGAAGAGGGCAGCAATGGCACTTCCTGTTGAGCTTGTTGTTTTGGCTTTTCTCTTCTGTGCTACCGTTGGTTTGGTGGACTCTGATGATGGAGCAACGTTGTTGGAGATAAAGAAATCATTCAGGGATGTGGATAATGTTCTTTATGATTGGACAAGCTCACCTTCATCAGACTACTGTATGTGGAGAGGTGTCACCTGTGACAATGCCACTCTCAATGTTCTCTCTCTTAATCTTTCAGGTCTCAATTTGGATGGGGAAATTTCTCCTTCAGTCGGGAACCTCAAGGGCCTGCAAACTTTGGATTTGAGGGGGAATAGTCTTTCTGGGCAAATTCCAGATGAGATTGGGGATTGCTTTTCGTTAATAAATCTGGATTTGTCGTTTAATGAGATTTATGGAGACATACCATTTTCCATTTCGAAGTTGAAGCAACTGGAAATGCTTGTTCTGAAAAATAATCGACTGATTGGGCCGATCCCATCTACTTTATCTCAGATTCCAAACTTGAAGGTCTTGGATCTGGCACAGAATAATCTTAGTGGGGAAATACCAAGACTAATTTACTGGAATGAAGTGTTGCAATATCTTGGTTTGCGTGGCAACAATTTGGTGGGCACACTATCTCCAGATTTGTGTCAGCTGACTGGTTTATGGTATTTCGATGTGAGAAACAACAGTTTAACTGGCGGCATACCCCAAACCATAGGCAACTGCACAGCCTTCCAGGTCTTGGACTTGTCATACAATCATCTCACTGGAGAGATACCATTTAACATTGGTTTCCTTCAAGTAGCCACATTGTCCTTACAGGGTAATCAGCTATCAGGTCCCATTCCACCCGTAATTGGTCTGATGCAGGCGCTTGCGGTGCTAGATTTGAGTTGCAACATGTTAACTGGTCCAATCCCCTCTATCTTAGGGAATCTGACTTATACCGAGAAGCTGTACTTGCATAGTAACAAGCTCACTGGGCCCATTCCAGCAGAGCTTGGGAATATGACGAAGCTCCATTATCTGGAACTGAATGATAATCATCTTACTGGGAATATTCCAGCTGAGCTTGGAAAACTCACCGATTTATTCGATCTAAATGTTGCTAATAACAATCTCGGAGGGCCTATCCCTGACAATCTTAGCTCTTGCACAAATCTCAACAGCCTAAATGTGCATGGCAACAAGTTGAATGGAACTATCCCCCCTTCTTTCCAGAGGCTAGAGAGTATGACTTACTTGAATCTCTCTGCGAATGATCTACAAGGTCCTATTCCAGTCGAGCTGTCTCGTATTGGCAATTTGGATACGTTAGACATTTCAAATAACAAAATTAGTGGCACAATTTCTTCCTCCTTCGGTGATCTGGAACATCTGCTAAAGCTAAATTTAAGTAGGAATCATTTGACGGGATTTATTCCAGCTGAATTTGGCAATCTAAGGAGTGTAATGGAAATAGATATTTCACACAACCAGCTCTCTGGGTTCATTCCTCAAGAACTGAGTCAACTTCAAAATCTTCTCTCCTTGAGACTTGAAAACAACAATTTATCTGGGGACCTGACGTCGCTGATTAGCTGCCTAAGTCTTACTGAATTAAATGTATCTTATAACAATCTAGCTGGTGAGATTCCGACAAGCAACAACTTCTCTAGATTTTCATCTGACAGTTTCCTTGGAAATCTTGCTCTCTGTGGATATTGGAATAGCAACAACTATCCCTGCCATGAACCTCATACGACAGAGCGAGTGACCATATCTAAAGCTGCTATCCTGGGAATTGCTCTCGGTGCCCTTGTAATCCTTCTAATGATCCTTCTAACAGTGTGCCGTCCAAACAACACAATACCTTTTCCAGATGGATCACTTGACAAACCAGTTACGTACTCCACTCCCAAGCTAGTGATCCTTCACATGAACATGGCCCTTCACGTTTATGAGGATATTATGAGGATGACTGAAAATTTGAACGAAAAGTACATTATTGGACATGGAGCTTCAAGCACAGTCTACAAGTGTGTACTGAAAAATTGTAAACCTGTGGCTGTCAAAAAGCTCTTTTCCCACCAGCCCCATAGCATGAAGGGATTCGAGACCGAACTGGAAACCGTGGGTAGCATCAAGCACAGAAATCTAGTAAGCCTCCAAGGATACTCCTTATCCCCCTCTGGGAATCTCCTCTTCTATGACTACATGGAAAATGGCAGTCTTTGGGATCATCTACATGGGTCTAGCTCTACCAAGAAGAAAAAGCTTGACTGGGACACTCGGCTCAATATTGCCCATGGAGCAGCCCAGGGACTATCATATCTACACCATGATTGTAGCCCTCGCATTATCCACAGGGATGTTAAGTCATCTAACATTTTATTAGACAAGGATTTTGAAGCCCATCTCACTGATTTTGGTATTGCCAAGAGCTTATGCACCTCGAAGACATATACATCCACTTATATCATGGGAACCATTGGATACATAGATCCAGAGTATGCTCGGACTTCTCGACTTACTGAAAAGTCTGATGTTTACAGCTTTGGCATTGTGTTACTTGAATTGCTCACAGGAAGGAAAGCTGTGGACAATGAATCAAATCTCCACCAATTGATCTTATCAAAAACAGCCAACAATGCTGTAATGGAGACGGTTGATGCTGAAATAACTGCAACTTGCAAGGACCTTGGAGCTGTAAAGAAGGCATTTCAGCTGGCTCTCCTTTGCACCAAGAGGCAGCCATCCGACCGACCAACAATGCACGAAGTAACACGCGTCATTGCGAGTCTTCTGCCCTCCGCCACAACACTAAAGCAAACACCAACCATAACATCCATGCCCCCATCTGCAAAATCCCCTTGCTACAAGGATGAATATGCAAATCTAAAAACGCCGCACGTGCTGAACTGCCCAACCATGAGCACCTCAGATGCCCAGCTCTTCCTCAAGTTCGGAGAGGTAATATCACAAAACAGCAATGATTTCAAGGGTAATCAACTTGCCAATGGTTTGATTTCTGTGACCTATCTTCATTTAGTCCTTTTCCCACTTGTGAGAAAAGCCGAGTCGGTCAAGGAGAATGAAATTAATAACAACTCCACAAACTACCCAACACACAAGAAAAATTCATCTATACTGAAAGGCAAGCAGGAAAAGAAACTCATCAATGTCATTGGGAATGATGCTTACAAAATGCTTAAGCAACGAGCAAATTGCAGCATAGTGCATGTCTTACATTCTCAAGATCTGGAAGAAAGAAGCCGTAGTGAAATCCAACCATAA 3462 43.01 MNQALDGPWAQLCQILWPSLSNVPILPSQKRREREKGNGFKGCCVMLQVLVTNQPWKVQQCKMKSVKRAAMALPVELVVLAFLFCATVGLVDSDDGATLLEIKKSFRDVDNVLYDWTSSPSSDYCMWRGVTCDNATLNVLSLNLSGLNLDGEISPSVGNLKGLQTLDLRGNSLSGQIPDEIGDCFSLINLDLSFNEIYGDIPFSISKLKQLEMLVLKNNRLIGPIPSTLSQIPNLKVLDLAQNNLSGEIPRLIYWNEVLQYLGLRGNNLVGTLSPDLCQLTGLWYFDVRNNSLTGGIPQTIGNCTAFQVLDLSYNHLTGEIPFNIGFLQVATLSLQGNQLSGPIPPVIGLMQALAVLDLSCNMLTGPIPSILGNLTYTEKLYLHSNKLTGPIPAELGNMTKLHYLELNDNHLTGNIPAELGKLTDLFDLNVANNNLGGPIPDNLSSCTNLNSLNVHGNKLNGTIPPSFQRLESMTYLNLSANDLQGPIPVELSRIGNLDTLDISNNKISGTISSSFGDLEHLLKLNLSRNHLTGFIPAEFGNLRSVMEIDISHNQLSGFIPQELSQLQNLLSLRLENNNLSGDLTSLISCLSLTELNVSYNNLAGEIPTSNNFSRFSSDSFLGNLALCGYWNSNNYPCHEPHTTERVTISKAAILGIALGALVILLMILLTVCRPNNTIPFPDGSLDKPVTYSTPKLVILHMNMALHVYEDIMRMTENLNEKYIIGHGASSTVYKCVLKNCKPVAVKKLFSHQPHSMKGFETELETVGSIKHRNLVSLQGYSLSPSGNLLFYDYMENGSLWDHLHGSSSTKKKKLDWDTRLNIAHGAAQGLSYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCTSKTYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNESNLHQLILSKTANNAVMETVDAEITATCKDLGAVKKAFQLALLCTKRQPSDRPTMHEVTRVIASLLPSATTLKQTPTITSMPPSAKSPCYKDEYANLKTPHVLNCPTMSTSDAQLFLKFGEVISQNSNDFKGNQLANGLISVTYLHLVLFPLVRKAESVKENEINNNSTNYPTHKKNSSILKGKQEKKLINVIGNDAYKMLKQRANCSIVHVLHSQDLEERSRSEIQP 1153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26790244 26800729 + CcPI632755_05g018040.1 Cco05g1804 179432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1804 1153 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 795 998 - -
Cco05g1804 1153 SUPERFAMILY Protein kinase-like (PK-like) 697 985 IPR011009 -
Cco05g1804 1153 SUPERFAMILY L domain-like 329 617 - -
Cco05g1804 1153 CDD STKc_IRAK 725 987 - -
Cco05g1804 1153 ProSitePatterns Serine/Threonine protein kinases active-site signature. 842 854 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g1804 1153 ProSiteProfiles Leucine-rich repeat profile. 234 256 IPR001611 GO:0005515(InterPro)
Cco05g1804 1153 Gene3D Transferase(Phosphotransferase) domain 1 795 1003 - -
Cco05g1804 1153 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 257 366 - -
Cco05g1804 1153 SUPERFAMILY L domain-like 93 328 - -
Cco05g1804 1153 ProSiteProfiles Protein kinase domain profile. 719 991 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g1804 1153 ProSitePatterns Protein kinases ATP-binding region signature. 725 748 IPR017441 GO:0005524(InterPro)
Cco05g1804 1153 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 367 640 - -
Cco05g1804 1153 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 372 985 IPR051564 GO:0016020(PANTHER)
Cco05g1804 1153 Gene3D Ribonuclease Inhibitor 256 328 IPR032675 -
Cco05g1804 1153 Pfam Leucine Rich Repeat 163 184 IPR001611 GO:0005515(InterPro)
Cco05g1804 1153 Pfam Leucine Rich Repeat 449 471 IPR001611 GO:0005515(InterPro)
Cco05g1804 1153 Pfam Leucine Rich Repeat 283 304 IPR001611 GO:0005515(InterPro)
Cco05g1804 1153 Pfam Leucine Rich Repeat 592 610 IPR001611 GO:0005515(InterPro)
Cco05g1804 1153 Pfam Leucine Rich Repeat 401 423 IPR001611 GO:0005515(InterPro)
Cco05g1804 1153 Pfam Leucine Rich Repeat 379 399 IPR001611 GO:0005515(InterPro)
Cco05g1804 1153 Pfam Leucine Rich Repeat 354 375 IPR001611 GO:0005515(InterPro)
Cco05g1804 1153 Pfam Leucine Rich Repeat 308 327 IPR001611 GO:0005515(InterPro)
Cco05g1804 1153 Pfam Protein kinase domain 721 984 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g1804 1153 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 92 256 - -
Cco05g1804 1153 Gene3D Phosphorylase Kinase; domain 1 701 794 - -
Cco05g1804 1153 Pfam Leucine rich repeat 497 556 IPR001611 GO:0005515(InterPro)
Cco05g1804 1153 Pfam Leucine rich repeat 210 269 IPR001611 GO:0005515(InterPro)
Cco05g1804 1153 Gene3D Ribonuclease Inhibitor 92 255 IPR032675 -
Cco05g1804 1153 Pfam Leucine rich repeat N-terminal domain 93 133 IPR013210 -
Cco05g1804 1153 Gene3D Ribonuclease Inhibitor 329 639 IPR032675 -
Cco05g1804 1153 SMART LRR_typ_2 232 256 IPR003591 -
Cco05g1804 1153 SMART LRR_typ_2 160 184 IPR003591 -
Cco05g1804 1153 SMART LRR_typ_2 519 542 IPR003591 -
Cco05g1804 1153 SMART LRR_typ_2 399 423 IPR003591 -
Cco05g1804 1153 SMART serkin_6 719 991 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g1804 1153 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 690 794 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1804 Cco-Chr5:26790244 Cco09g1423 Cco-Chr9:18609304 3.10E-150 dispersed
Cco05g1804 Cco-Chr5:26790244 Cco01g1573 Cco-Chr1:28443333 1.50E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86857 PF00069 Pkinase 6.30E-46 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1804 K20718 - csv:101214398 1854.34