Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1817 ATGCCTCTCATCAACGCCGCCGGCGCCGCCCACCGCCCTCACCAGTCATCTGCATCCCAATCACCTCAATTCCACATACCTACTACTGCCGCCGATGACAACGACGATCTTCTTCCTTCCACCCAGACAGTCCTTTCCTCGCGGTCTTCAACCTCGCAAAAACCCCTCGCGATCTCCGACTTATCCCTTCACATTCCCGCTCCCAAAAGGCCGAAACGTTCTGCCCCGACGGCCACTGGCAAGGAAAACGTTCCCTCTATAACACACCACGATGTTGGATTTAAGCCCAATTTTGGTAGACGTAATGGCGCTGCTGCTTTGGATGATGATGAGGTCTTCGAAGCGTCGGATATTGATTTAGGTTGCAGTTTGGATTTGATACAGCCGAGCATTCTGGGCTGCAGTTACGAAACTCGAGATGTAAACTCGGGAGAGGAGGTAGTTGATGGGGATGATGATTTTTCTGGTGCGATGAATGAAACTAAGGGGTCGAAGGTAAAGGGGGGCTATCTGGTCAATTCGATTGAATCTAGGCTAGTGAATTCCAGAGTAGATTGCGATGTTGAGGTCAGTGGCAGTGATGGTTTTGAGTCGGATGCAGAGCTGGACTTGTTGCTCAATCTGCGTCCGCAACTGGATGAGGAAGACGGTATTAGTGGAGTGGGATTTGATACTGAGGAAACAGGTTTTCTAGTGGATGAAGAAGGTCTGATTCAATGTCCTCTTTGTGGGGTTGATATTTCTGATCTTAGTGACGAGCAACGTCTTGTTCACACCAATGATTGTATCGACAAAGAGGATGCCCAAGCTCAAAATGCTGCTCTTACTTCTGATAAAAAGCAAACTTCAGGTCCTCAACAGTCTGGTGATAATTCCAAATTTTCAACTGTTCTCAAATGGTTGCATGATCTTGGTTTATCGAAATATGAAGACATTTTTGTAAGGGAGGAGATTGATTGGGACACGTTACAGTGGTTGACAGATGAGGATCTCAATAATATGGGTATCACTGCACTTGGCCCCCGAAGGAAGATCACACATGCTCTCTCTGAACTCAGAAAAGAGTCATCTGCGGTTGAAACTTGCACGAATTCACATGCCCCTTCTGGTATTGGGCAACAGAGTAACAATGGTTCAGATGGGCGTGAAGGATCAATCAATGGAATTAATAGAACACCTGCGAACAAGTTGATCACTGATTATTTCCCAGGCTTTGTCACTAATAAGAAGAACGCATGCAGCATCATTAGTGGTCAGAAAGATGTGGGGAAAAAAATACCCGACTCTCTTCACAAAGGTAAAACTGCAAAAAGAAATGTAAGAAATGGGAAGCTTGGGAATGTTCCAGCGTGGAGTTGTATACCAGGGACACCATTTAGAGTGGATGCTTTTCGACATCTTAGAGGAGATTGTTTTCATTGGTTTCTTACTCACTTTCATATGGATCATTATCAAGGCCTGACAAAGTCATTTTGTCATGGAATGATTTATTGTTCTCCTATAACAGCAAAGCTAGTAAACATGAAGATTGGAATTCCATGGGAAAGGTTACAAGTTTTACCTCTCGACCAGAAAATTAACATTGCGGGAATAGATGTAACTTGTTTTGATGCTAATCATTGCCCTGGTTCAATAATCATACTCTTTGAACCACCTAATGGTAAGGCTGTTCTACATACAGGGGATTTCCGATTTTGTGAGCAAATGGGAAGCTTGTCGGTTTTTCAAACATGCCGTATCCATACCCTGATCCTTGATACCACTTATTGTGATCCACAGTATGATTTCCCAAAGCAGGAGACCGTTATACAATTTGTAATTGATGCCATTCAAGCTGAAGCTTTCAACCCAAAAACTCTTTTCCTGATTGGATGTTATACCGTCGGAAAGGAACGACTTTTTTTGGAAGTTGCCCGTGTCCTGCGCAAGAAGGTGTATGTAACTGCAGCAAAGTTACGGATTTTGAAATGCTTGGGGTTCTCAGCGGAGGACATGCAGTGGTTTACAGTGAATGAAAGGGAAAGCCACATACATGTCGTACCACTGTGGACACTTGCGAGCTTCAAACGACTGAAGCATGTATCAAATCAATATGCAAATCGATTCAGTCTTATAGTTGCTTTCTCTCCTACCGGCTGGGCACTTTCAAAAGGAAAGAAGAAATCTCCTGGGAGAAGGTGGCAGCAAGGTACGATTATAAGATATGAAGTGCCATATAGTGAGCATAGCAGCTTCTCAGAACTAAAGGATTTTGTAAAGCTTGTATCTCCTGTAAACATAATACCAATACATATATTGAAATCAAATTTGCAGATTCACGTTTGTATTTCCTATCAAGCCAAAACCATGCCCCTATTGTTGCCTCCTGATGGTCGAAATTGCAGCTAA 2388 43.59 MPLINAAGAAHRPHQSSASQSPQFHIPTTAADDNDDLLPSTQTVLSSRSSTSQKPLAISDLSLHIPAPKRPKRSAPTATGKENVPSITHHDVGFKPNFGRRNGAAALDDDEVFEASDIDLGCSLDLIQPSILGCSYETRDVNSGEEVVDGDDDFSGAMNETKGSKVKGGYLVNSIESRLVNSRVDCDVEVSGSDGFESDAELDLLLNLRPQLDEEDGISGVGFDTEETGFLVDEEGLIQCPLCGVDISDLSDEQRLVHTNDCIDKEDAQAQNAALTSDKKQTSGPQQSGDNSKFSTVLKWLHDLGLSKYEDIFVREEIDWDTLQWLTDEDLNNMGITALGPRRKITHALSELRKESSAVETCTNSHAPSGIGQQSNNGSDGREGSINGINRTPANKLITDYFPGFVTNKKNACSIISGQKDVGKKIPDSLHKGKTAKRNVRNGKLGNVPAWSCIPGTPFRVDAFRHLRGDCFHWFLTHFHMDHYQGLTKSFCHGMIYCSPITAKLVNMKIGIPWERLQVLPLDQKINIAGIDVTCFDANHCPGSIIILFEPPNGKAVLHTGDFRFCEQMGSLSVFQTCRIHTLILDTTYCDPQYDFPKQETVIQFVIDAIQAEAFNPKTLFLIGCYTVGKERLFLEVARVLRKKVYVTAAKLRILKCLGFSAEDMQWFTVNERESHIHVVPLWTLASFKRLKHVSNQYANRFSLIVAFSPTGWALSKGKKKSPGRRWQQGTIIRYEVPYSEHSSFSELKDFVKLVSPVNIIPIHILKSNLQIHVCISYQAKTMPLLLPPDGRNCS 795
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26950149 26957803 + CcPI632755_05g018170.1 Cco05g1817 179445

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1817 795 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 445 764 - GO:0003684(PANTHER)|GO:0006303(PANTHER)|GO:0035312(PANTHER)|GO:0036297(PANTHER)
Cco05g1817 795 SUPERFAMILY SAM/Pointed domain 291 354 IPR013761 -
Cco05g1817 795 MobiDBLite consensus disorder prediction 1 95 - -
Cco05g1817 795 SUPERFAMILY Metallo-hydrolase/oxidoreductase 469 773 IPR036866 -
Cco05g1817 795 Pfam DNA repair metallo-beta-lactamase 664 762 IPR011084 -
Cco05g1817 795 CDD SAM_superfamily 297 351 - -
Cco05g1817 795 Gene3D - 454 763 IPR036866 -
Cco05g1817 795 FunFam DNA cross-link repair 1A protein 595 742 - -
Cco05g1817 795 Gene3D - 595 742 - -
Cco05g1817 795 MobiDBLite consensus disorder prediction 273 292 - -
Cco05g1817 795 Gene3D - 288 365 IPR013761 -
Cco05g1817 795 ProSiteProfiles SAM domain profile. 292 355 IPR001660 GO:0005515(InterPro)
Cco05g1817 795 MobiDBLite consensus disorder prediction 356 391 - -
Cco05g1817 795 MobiDBLite consensus disorder prediction 12 58 - -
Cco05g1817 795 Pfam SAM domain (Sterile alpha motif) 291 353 IPR001660 GO:0005515(InterPro)
Cco05g1817 795 SMART SAM_4 289 355 IPR001660 GO:0005515(InterPro)
Cco05g1817 795 CDD SNM1A-1C-like_MBL-fold 436 592 - -
Cco05g1817 795 FunFam DNA ligase 6 454 613 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1817 K15340 - - csv:101218609 1313.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1264 Cco-Chr4:27981227 Cco05g1817 Cco-Chr5:26950149 8.00E-06 dispersed
Cco05g1817 Cco-Chr5:26950149 Cco07g1727 Cco-Chr7:31265868 1.20E-55 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g184 . Blo12g01034 . . . . . . . . . . Car09g00326 . . . . . . . . . . . Cla05g01642 Cam05g1752 Cec05g1761 Cco05g1817 Clacu05g1743 Cmu05g1628 Cre05g1755 Cone4ag1709 Cone7ag1626 . . Lsi04g01373 . . . . . . . . Bpe04g00105 . . . . Cmo09g00379 Cma09g00377 . . . . . Bhi09g03063 Tan01g3503 . . Hepe01g1928 Mch11g0465 . . . . . . . . . . . Cme07g00163
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008703 0 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 2 1 34