Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1824 ATGGAATCGGAGGATTCAGTGAGATTAAGATTGGAGGAACTGCACAAAGACTTGGGGAAGAAACAGAGATTCGAGGAAGCAGTTTCCACCATTATTTCTCTGCTTCAAGATCGCTATCCTACTGCTTCTCCTTCATTACGCAAATCGTTCTATTCCGTAATTTGCCGAGTTGCAACAGTATTGAAGACGAGGTTTACGGCCCCAGGGTTTTGGCTTTCTGGTCTCAAGCTTTTTCAGTTTTCTTTGACTTTGCTCTCTGATCATTCAGAGAGACAACACCTGGAGGCTTGCCTAGCTCAGGCCAAGGAAATTCTGCACCAAATCGATAATCCATCTCCTGCTTCACAAAGTAATTCATCAAATGGAGGCTATCTTTTTGAGGGCCATCTCACTGTTGATCCAGAGCCACCCCAGCCCCAGTGGCTGGTGCAGTCAAACCTCTTGACAGCCGCTGCAGCTGCGCTATCTAATGCTGAATCTTCTCAAGGTCCAGCTGAGAACAGCAACACTTCTGAAAATGCTGCTAATATTCTTCAAGCGCTTATTGAAAATCTAGATAACGCTGTAGATGGGTTCATGGACTTGGAAATGGCTAGCGGACCGCCAAGAGTCCCTCCTGCAAGTAAAGAAGTCGTCGCAAAACTTCCTGTAATTACGATAACTGATGAAGTTCTTGCCAAGCTAGGAAGAGATGTACAATGTGCTATTTGCAGGGAAAACTTGGCTGTTGATGACAAGATGCAGGAATTGCCTTGCAAACACACATTCCACCCACCTTGTTTGAAGCCCTGGCTGGATGAGCATAACTCTTGTCCGATTTGTCGACATGAATTGCCCACCGACGACCACAAATACGAGAGCTGGAAGGAGCGAGAGAAAGAGGCCGAAGAAGAAAGAAAAGGAGCTGCAAATGCTGTTCGTGGTGGTGAATATATGTATATTTGA 945 45.71 MESEDSVRLRLEELHKDLGKKQRFEEAVSTIISLLQDRYPTASPSLRKSFYSVICRVATVLKTRFTAPGFWLSGLKLFQFSLTLLSDHSERQHLEACLAQAKEILHQIDNPSPASQSNSSNGGYLFEGHLTVDPEPPQPQWLVQSNLLTAAAAALSNAESSQGPAENSNTSENAANILQALIENLDNAVDGFMDLEMASGPPRVPPASKEVVAKLPVITITDEVLAKLGRDVQCAICRENLAVDDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELPTDDHKYESWKEREKEAEEERKGAANAVRGGEYMYI 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27048352 27050273 - CcPI632755_05g018240.1 Cco05g1824 179452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1824 314 FunFam E3 ubiquitin-protein ligase RNF181 195 281 - -
Cco05g1824 314 Coils Coil 285 305 - -
Cco05g1824 314 Pfam Ring finger domain 233 275 IPR001841 -
Cco05g1824 314 SUPERFAMILY RING/U-box 228 281 - -
Cco05g1824 314 CDD RING-H2_RNF126-like 233 275 - -
Cco05g1824 314 ProSiteProfiles Zinc finger RING-type profile. 234 275 IPR001841 -
Cco05g1824 314 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 119 280 - GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Cco05g1824 314 SMART ring_2 234 274 IPR001841 -
Cco05g1824 314 MobiDBLite consensus disorder prediction 109 130 - -
Cco05g1824 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 281 IPR013083 -
Cco05g1824 314 MobiDBLite consensus disorder prediction 109 125 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1824 Cco-Chr5:27048352 Cco10g2115 Cco-Chr10:34430058 2.90E-18 dispersed
Cco05g1824 Cco-Chr5:27048352 Cco01g1620 Cco-Chr1:28903923 4.10E-20 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1824 K16274 - csv:101218065 433.721