Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1829 ATGGTCTGCGAGATGGAGACTGGTGTTATTGAAGATATGGACATCGAAGCGGTTCCTTCTATGTGGCCTGAGGATATTGGACCAGATGTTAGAAAGCAGTTCAACGTAGAAAGGCCAGGAGCAGATCAAGATATGTTGGAAGAAGTTAACATAATAGAGGAACCGACGATCGTTGATTTCAAGCGTCTTATAGAGTTAACTAACTATACTGAGAAAGGATCTTCACAATTACAATATCTTGCAAAACAGTGGGAGTATAAGCAAGCAAATGCTGTGCGTCTCCTTAAAGAAGAACTTGACATTCTAAGCAAGCAGAGGAAAGAAGTTGAGCTCAAGAAATTAAAAATATTAGAAGAACATCTTTTTGAGGAAGAAAGATATGCTGGTGATAAACGTCCAATTTCTATTTTGGAAGAATCTTGTGATCTATGGCAAGATATTCCAAGTAGGAAAACTGATTTCGTCGTTCAAAGTAAGAGAGTCGAAATTGATGCAGAGTATGATACTGTGACATACTGGAAGCAACGAGCCATGGATCTGGAAAAATTATTGGAAGCAAGTCTACAGCGAGAGCAGGTGCTTGCAGAGAAGCTTAAGGAAAACATAAAAAATATTGAAAAGCAGTCCTCACCAGTTGAGGAGTTGTCACAAATTCTTAAAAGAGCCGACAATTTTTTGCATTTTGTTCTGCAGAATGCACCAGTGGTTTTTGGTCATCAGGACAAAGAGTTGCGCTACCGGTTTATCTACAATCATTTTCCAAGTTTGCAAGAAGAGGATATTATAGGAAGAACAGACGTTGAAATTTTCAGTGGTGCTGGTGTTAAGGAATCTCAAGATTTCAAGAAAGAAGTTCTGGAGAAAGGGTTACCTGCAAAGAGGGAGATTCAGTTTGATACCGAATTATTTGGGCTGAAGACCTTTTTGATTTATGTTGAACCTGTCTTTAGCAAGGCTGGAGAGACAATTGGAATAAATTATATGGGAATGGACATAACCGATCAGGTTAAAAAACGAGAAAAGATGGCAAAGCTTCGTGAGGAGATTGCAGTACAAAAAGCCAAGGAATCAGAGCTGAACAAAACAATTCATATCACGGAGGAAACAATGCGAGCAAAGCAAATGCTAGCAACTATGTCACATGAAATTAGATCTCCACTGGCTGGAGTGGTTAGTATGGCTGAGATTCTGTCCACCACGAAACTTGATCGGGAGCAACAACATCTGTTAGATGTTATGCTGTCTTCAGGAGACTTGGTGCTTCAACTTATAAACGATATCTTGGACCTTTCTAAGGTTGAATCAGGAGTAATGAAGTTGGAAGCTACAAAATTCCGTCCAAGAGAGGTTGTAAAACATGTGCTACAGACTGCTGCCGCATCATTGCGAAAATTTTTGGTTCTGGAGGGACGTATAGCCGATGATGTTCCTATAGAGGTCATTGGAGATGTTCTTAGGATTCGGCAAATTCTCACCAACTTGATCAGCAACGCAATCAAGTTCACTCATCAAGGGAAGGTTGGAATTAACCTTTATGTGTTACCCTATCCACCCATTGGGACAGGAGAAGAATGCCATAAGAAATCAACAGCCGATAACTCAACAGTTCCGGTAAATGGTTTGCAAGAAGGAACATGTCTTCCAGCCCCTCAAAATGGCTTGTGTGGCCATAAACACGGCGACAGAAATCACTTGCATTGTGATGCACTAGGAACCCCAAGCAAGAGCGAAACCACAATGAATGGAAACAGAGAAAACAAGTCTTGTTCAGCTGAAACGACGGTATGGATACGCTGTGATGTATATGACACAGGAATTGGAATACCAGAAAATGCACTACCAACCCTTTTTAAGAGGTACATGCAAGCGAGTGCCGATCATGCTCGAAAGTATGGGGGGACTGGACTTGGGCTGGCAATATGCAAACAGCTGGTTGAATTGATGGGTGGCCATCTCACCGTTTCCAGCCGAGAAAACCATGGATCTACATTTACATTTGTGTTGCCATACAAGGTTTCAACCACCTGTAGTCCTTCCGACGATTCCGACGAGCTCTCAGATGACGAGTCTACAAATGATGAAATGACTGAGGGCTTTTTCCAATTCCAACCCCACAGTTTTAGTTCCCTATCATCTTCCAACGGATCCACAAGGATCCCAAACTCATTGATGCATACAACTGGGTATCCCACCTCAACCAAACTCAATGGATTTGCTGAAGGTGGTTCTTATCCTATTCCCTCAAACAACATCGCACCACAACAGGCTGCTTCTCCTAGAGATGCTCGTTACACCAATGCCGCAGTAACCTCAAGCGAATCACAATGTTTATCAAGTCAGATCAACTCAAATCTTGATAACCAAAACCAATCAGGTCAGATCAACTCAAATCTTGATAACCAAAACCAATCAGACACAAATGCTTGGTTGCAAAATGCCAGTGGCGTGAATTCTGTTTACAGATCAGAAACAACAAAGCAAGAAGATAGATTGGAAAAACAAAGTAATAAACTTCAAAAAACAGATCAGGGGAAAGAGAGATCCGATGCAAGTAATCACTGCAGAAATAGCAGTTGTGGTTCTGAAGTAACAGTGGCATTGGAGCCCAGAATTCTTCTTGTTGAGGATAATAAGACCAATATTATGGTGACTCAGTCCATGATGAAGAAGTTTGGCCAAAAAATCGATGTCGTAACTAATGGTATTGAAGCTGTTCGTGCAGTTCAACGACGTTCGTATGATCTCATTCTCATGGATGTATTCATGCCAGTTATGGATGGGCTTGAAGCTACAAGGTTAATTCGTTCTTTTGAGGAAACAGGCAGCTGGGAGGCAGCCGTAAATGCTGGAATAATCCAACCAACTACACCTTCTTGGACTCCCTCCTCCCGAAACAGGATGCCCATCATTGCAATGACGGCGAATTCAATGTCAGAAAGCGCAGATGAGTGTTATGAAAATGGTATGGACTCATTCGTATCAAAGCCAATCACGTTCCAGAAGTTGAAAGAATGTCTTGAACGATATTTACCACAACCTCCCTTGTAA 3048 41.63 MVCEMETGVIEDMDIEAVPSMWPEDIGPDVRKQFNVERPGADQDMLEEVNIIEEPTIVDFKRLIELTNYTEKGSSQLQYLAKQWEYKQANAVRLLKEELDILSKQRKEVELKKLKILEEHLFEEERYAGDKRPISILEESCDLWQDIPSRKTDFVVQSKRVEIDAEYDTVTYWKQRAMDLEKLLEASLQREQVLAEKLKENIKNIEKQSSPVEELSQILKRADNFLHFVLQNAPVVFGHQDKELRYRFIYNHFPSLQEEDIIGRTDVEIFSGAGVKESQDFKKEVLEKGLPAKREIQFDTELFGLKTFLIYVEPVFSKAGETIGINYMGMDITDQVKKREKMAKLREEIAVQKAKESELNKTIHITEETMRAKQMLATMSHEIRSPLAGVVSMAEILSTTKLDREQQHLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLRKFLVLEGRIADDVPIEVIGDVLRIRQILTNLISNAIKFTHQGKVGINLYVLPYPPIGTGEECHKKSTADNSTVPVNGLQEGTCLPAPQNGLCGHKHGDRNHLHCDALGTPSKSETTMNGNRENKSCSAETTVWIRCDVYDTGIGIPENALPTLFKRYMQASADHARKYGGTGLGLAICKQLVELMGGHLTVSSRENHGSTFTFVLPYKVSTTCSPSDDSDELSDDESTNDEMTEGFFQFQPHSFSSLSSSNGSTRIPNSLMHTTGYPTSTKLNGFAEGGSYPIPSNNIAPQQAASPRDARYTNAAVTSSESQCLSSQINSNLDNQNQSGQINSNLDNQNQSDTNAWLQNASGVNSVYRSETTKQEDRLEKQSNKLQKTDQGKERSDASNHCRNSSCGSEVTVALEPRILLVEDNKTNIMVTQSMMKKFGQKIDVVTNGIEAVRAVQRRSYDLILMDVFMPVMDGLEATRLIRSFEETGSWEAAVNAGIIQPTTPSWTPSSRNRMPIIAMTANSMSESADECYENGMDSFVSKPITFQKLKECLERYLPQPPL 1015
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27141792 27150043 + CcPI632755_05g018290.1 Cco05g1829 179457

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1829 1015 CDD REC_hyHK_CKI1_RcsC-like 871 1006 - -
Cco05g1829 1015 FunFam Histidine kinase 5 213 348 - -
Cco05g1829 1015 Gene3D - 866 1010 - -
Cco05g1829 1015 PRINTS Bacterial sensor protein C-terminal signature 597 611 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cco05g1829 1015 PRINTS Bacterial sensor protein C-terminal signature 656 669 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cco05g1829 1015 PRINTS Bacterial sensor protein C-terminal signature 632 650 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cco05g1829 1015 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 33 1011 - GO:0000155(PANTHER)|GO:0005887(PANTHER)|GO:0009927(PANTHER)|GO:0046777(PANTHER)
Cco05g1829 1015 MobiDBLite consensus disorder prediction 820 859 - -
Cco05g1829 1015 Gene3D - 436 676 IPR036890 -
Cco05g1829 1015 CDD HisKA 370 432 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cco05g1829 1015 MobiDBLite consensus disorder prediction 823 852 - -
Cco05g1829 1015 MobiDBLite consensus disorder prediction 746 804 - -
Cco05g1829 1015 SMART HKATPase_4 482 672 IPR003594 -
Cco05g1829 1015 Pfam Response regulator receiver domain 871 938 IPR001789 GO:0000160(InterPro)
Cco05g1829 1015 ProSiteProfiles Response regulatory domain profile. 870 1010 IPR001789 GO:0000160(InterPro)
Cco05g1829 1015 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 436 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Cco05g1829 1015 Coils Coil 92 112 - -
Cco05g1829 1015 ProSiteProfiles Histidine kinase domain profile. 378 672 IPR005467 -
Cco05g1829 1015 FunFam Histidine kinase 5 864 1011 - -
Cco05g1829 1015 CDD HATPase_EvgS-ArcB-TorS-like 487 669 - -
Cco05g1829 1015 MobiDBLite consensus disorder prediction 747 804 - -
Cco05g1829 1015 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 425 670 IPR036890 -
Cco05g1829 1015 Coils Coil 821 841 - -
Cco05g1829 1015 SUPERFAMILY CheY-like 869 1011 IPR011006 -
Cco05g1829 1015 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 594 670 IPR003594 -
Cco05g1829 1015 Gene3D - 367 435 - -
Cco05g1829 1015 Coils Coil 181 208 - -
Cco05g1829 1015 FunFam Probable histidine kinase 1 558 675 - -
Cco05g1829 1015 MobiDBLite consensus disorder prediction 706 728 - -
Cco05g1829 1015 Coils Coil 342 362 - -
Cco05g1829 1015 SMART REC_2 869 1006 IPR001789 GO:0000160(InterPro)
Cco05g1829 1015 SMART HisKA_10 371 436 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cco05g1829 1015 Gene3D PAS domain 213 348 - -
Cco05g1829 1015 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cco05g1829 1015 FunFam Putative histidine kinase 5 359 436 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1829 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1829 Cco-Chr5:27141792 Cco11g0125 Cco-Chr11:1321306 1.40E-50 dispersed
Cco05g1829 Cco-Chr5:27141792 Cco02g0290 Cco-Chr2:2629916 1.10E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g656 Blo01g01429 . Bda01g00649 . . Bpe02g00521 . Bma01g02184 . . Cma01g01683 . Car09g00334 . . . Cpe06g00274 . . . . . . . Cla05g01652 Cam05g1764 Cec05g1770 Cco05g1829 Clacu05g1754 Cmu05g1639 Cre05g1767 Cone4ag1716 Cone7ag1634 . . Lsi04g01364 . . . . . . . . . . . Sed05g1812 Cmo01g01734 Cmo09g00388 Cma09g00387 . Car01g01298 . . Cpe02g00308 Bhi09g03051 Tan01g3520 Cmetu07g0647 . . . . . . . . . . . . . . Cme07g00153
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco10g0065 . 5 1211 Histidine Kinase Gene Family AT2G17820 64.3 0.0e+00 1445.6
Cco11g0125 . 20 1004 Histidine Kinase Gene Family AT2G01830 71.6 0.0e+00 1343.9
Cco01g0703 . 24 966 Histidine Kinase Gene Family AT2G01830 71.8 0.0e+00 1296.2
Cco02g0290 . 279 1231 Histidine Kinase Gene Family AT2G01830 54.0 6.1e-278 954.1
Cco06g0219 . 96 1022 Histidine Kinase Gene Family AT2G01830 53.8 7.5e-268 920.6
Cco02g1037 . 304 1252 Histidine Kinase Gene Family AT2G01830 51.8 1.4e-266 916.4
Cco05g1829 . 1 1010 Histidine Kinase Gene Family AT5G10720 56.4 1.0e-289 993.0
Cco08g1055 . 150 1269 Histidine Kinase Gene Family AT1G09570 80.3 0.0e+00 1836.2
Cco08g1058 . 3 1087 Histidine Kinase Gene Family AT1G09570 67.8 0.0e+00 1519.2
Cco02g0306 . 18 1112 Histidine Kinase Gene Family AT1G09570 54.9 0.0e+00 1206.8
Cco05g0775 . 34 1120 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1193.3
Cco05g0775 . 13 1061 Histidine Kinase Gene Family AT2G18790 78.9 0.0e+00 1670.2
Cco03g0733 . 31 1051 Histidine Kinase Gene Family AT2G18790 60.9 0.0e+00 1245.3
Cco08g1055 . 170 1203 Histidine Kinase Gene Family AT2G18790 53.6 0.0e+00 1092.8
Cco02g0306 . 26 1069 Histidine Kinase Gene Family AT2G18790 52.3 0.0e+00 1080.1
Cco08g1058 . 22 1026 Histidine Kinase Gene Family AT2G18790 51.0 2.6e-295 1011.9
Cco02g0306 . 12 1116 Histidine Kinase Gene Family AT5G35840 61.7 0.0e+00 1365.9
Cco05g0775 . 21 1122 Histidine Kinase Gene Family AT5G35840 52.7 0.0e+00 1145.2
Cco08g1055 . 158 1263 Histidine Kinase Gene Family AT5G35840 51.9 0.0e+00 1117.4
Cco05g0775 . 30 1122 Histidine Kinase Gene Family AT4G16250 76.9 0.0e+00 1709.9
Cco03g0733 . 32 1094 Histidine Kinase Gene Family AT4G16250 59.4 0.0e+00 1267.3
Cco08g1055 . 157 1264 Histidine Kinase Gene Family AT4G16250 52.8 0.0e+00 1137.1
Cco02g0306 . 26 1115 Histidine Kinase Gene Family AT4G16250 52.8 0.0e+00 1119.8
Cco03g0733 . 15 1094 Histidine Kinase Gene Family AT4G18130 63.4 0.0e+00 1347.0
Cco05g0775 . 38 1120 Histidine Kinase Gene Family AT4G18130 58.5 0.0e+00 1263.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005508 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59321 PF02518 HATPase_c 1.00E-27 CL0025 Cco TR