Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1832 ATGTTTGCCACGTGTGTGGTGTGGACCCGAGTAAATACGACCATTCCAACGGCTGTTCGAAATCTATCACGGTTCCAGTTCAATTTGGGCCGTTGGGCAGCTCCACGGGCATGTGAGGAACGGCTTATTCCTTCCACATCTGTAACCATAGCTACTAGATACTGTTTGTTAGTTTTCTTTTTTCTTTCTTCCATTTTGATCGAAGAGATTGGAGCTGGGCATTTTCAGAGCCTAGACAGTATGGGCTATCTGAATTCAGTCTTGTCTTGCTCGAGCCAGATTCATGCTGCTGAGGAGGCACCTGTAAGCGGCGGAGGATTAAGTCAGAATGGTAAGTTCAGCTACGGATATGCTAGCTCTCCAGGGAAGAGATCTTCGATGGAAGATTTTTATGAGACACGAATAGATGGTGTGGAAGGAGAAATAGTTGGTCTATTTGGTGTTTTTGATGGTCATGGCGGAGCTCGAGCTGCGGAGTATGTTAAGCACAATCTTTTTAGTAACTTGATCAGCCATCCAAAGTTCATATCGGATACCAAGTCTGCTATAGCTGATGCATACAACCACACGGACACAGAATTTCTTAAGTCGGAAAATAATCAAAACAGAGATGCTGGATCAACTGCTTCCACTGCCATCCTAGTTGGTGACCGCTTACTTGTTGCAAATGTGGGTGACTCTAGAGCTGTTATTTGCCGGGGTGGCACTGCCATTGCTGTCTCTCGAGATCATAAGCCTGACCAAACTGATGAGCGACGACGAATTGAGGATGCTGGAGGATTTGTGATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTTTCACGTGCATTTGGTGATAGGTTGTTAAAACAATATGTTGTTGCTGACCCTGAAATTCAGGAGGAAAAGATTGATAGCTCGCTCGAATTTCTTATACTTGCAAGTGATGGACTGTGGGATGTTGTCTCTAATGAGGAAGCCGTTGCTATGACTAAACCAATTCAGGACCCAGAAGAGGCAGCGAAGAGGTTGATGCAAGAAGCATATCAGAGAGGCAGTGCAGATAACATTACTTGCGTCGTCGTTCGTTTCTTGGCGAATCAAGGAAGTCCCTCTCTTGCAACATCTGGGTACGACTGA 1128 45.74 MFATCVVWTRVNTTIPTAVRNLSRFQFNLGRWAAPRACEERLIPSTSVTIATRYCLLVFFFLSSILIEEIGAGHFQSLDSMGYLNSVLSCSSQIHAAEEAPVSGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKHNLFSNLISHPKFISDTKSAIADAYNHTDTEFLKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGTAIAVSRDHKPDQTDERRRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKIDSSLEFLILASDGLWDVVSNEEAVAMTKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQGSPSLATSGYD 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27225870 27230722 - CcPI632755_05g018320.1 Cco05g1832 179460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1832 375 ProSitePatterns PPM-type phosphatase domain signature. 145 153 IPR000222 GO:0043169(InterPro)
Cco05g1832 375 Gene3D - 106 364 IPR036457 -
Cco05g1832 375 ProSiteProfiles PPM-type phosphatase domain profile. 114 360 IPR001932 -
Cco05g1832 375 Pfam Protein phosphatase 2C 143 353 IPR001932 -
Cco05g1832 375 SMART PP2C_SIG_2 125 360 IPR001932 -
Cco05g1832 375 CDD PP2Cc 113 360 IPR001932 -
Cco05g1832 375 PANTHER PROTEIN PHOSPHATASE 103 359 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cco05g1832 375 SUPERFAMILY PP2C-like 108 360 IPR036457 -
Cco05g1832 375 SMART PP2C_4 104 358 IPR001932 -
Cco05g1832 375 FunFam probable protein phosphatase 2C 59 106 364 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1042 Cco-Chr5:9193290 Cco05g1832 Cco-Chr5:27225870 1.10E-93 dispersed
Cco05g1071 Cco-Chr5:9551103 Cco05g1832 Cco-Chr5:27225870 4.00E-28 dispersed
Cco05g1832 Cco-Chr5:27225870 Cco08g0776 Cco-Chr8:19538892 1.60E-95 dispersed
Cco05g1832 Cco-Chr5:27225870 Cco11g1461 Cco-Chr11:27421448 1.30E-52 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1832 K17506 - csv:101216117 574.704