Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1836 ATGGCCAAAACCGCGTCGTATAATCAGATATGCAACTCGTTTTTAGTTCTGTTGGTTTTGTCTGTTATTCCGCCGTCGACGGTGGCATTGTCGTTCGGATTTTACGCTGCCACGTGTCCTGCGGCGGAGCTTATGGTCAGGAGCACCGTCAGATCGGCTTCCTCCGTTGACCCCACCGTCCCCGGCAAGCTCCTCCGGTTGCTCTTCCATGACTGTTTTGTTGAGGGGTGCGATGGTTCTGTTTTGGTAGAAGGAAACGGAACGGAAAGAAGCGATCCGGCCAACAGGTCGCTTGGAGGATTTGAAGTAATCGATTCAGCTAAGAGAACTCTAGAAATTTTCTGTCCTGGAACTGTTTCTTGTGCCGACATTGTCGTTTTGGCCGCCAGAGATGCAGTTGAATTCACCGGTGGGCCCTCCGTCGAAGTCCCGACGGGCCGGAGAGACGGAAAGATATCGGCGGCGTCAAATGTCCGACCAAACATCGTCGACACAAGCTTTTCAGTAGACCAAATGATGAATCTCTTCTCATCAAAAGGGCTGTCGGCGGACGATCTCGTCATTCTCTCTGGGGCCCATACCATCGGAAGTGCCCACTGCAGCGCCTTCAGCGACCGCTTCCGACGAAACCCAAACGGCAAACTGACCCTCATCGACGCCTCTCTCGACGGCGCTTACGCCGACGAGCTCATGCGGCGGTGTCCCGCCGGCGCCGCCTCTTCCGCCACCGTTGAAAACGATCCGGCGACGGCGTTTGTGTTCGACAATCAGTACTACAGAAACATTCTGTCACACAAAGGGCTGTTTCAGTCAGATTCCGTTCTGATCAGCGACGGCCGGACCAGGGCTCAGGTGGAGAGCTTTGCAAAGGATCAGATTGGGTTTTTTGAAAACTGGGCTCAGTCGTTCTTGAAACTTAGTAGTGTTGGAGTCAAGAGTGGGGATGAAGGGGAAATTAGACTGTCTTGTTCTACAAATAATGTTTGA 987 52.99 MAKTASYNQICNSFLVLLVLSVIPPSTVALSFGFYAATCPAAELMVRSTVRSASSVDPTVPGKLLRLLFHDCFVEGCDGSVLVEGNGTERSDPANRSLGGFEVIDSAKRTLEIFCPGTVSCADIVVLAARDAVEFTGGPSVEVPTGRRDGKISAASNVRPNIVDTSFSVDQMMNLFSSKGLSADDLVILSGAHTIGSAHCSAFSDRFRRNPNGKLTLIDASLDGAYADELMRRCPAGAASSATVENDPATAFVFDNQYYRNILSHKGLFQSDSVLISDGRTRAQVESFAKDQIGFFENWAQSFLKLSSVGVKSGDEGEIRLSCSTNNV 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27336552 27340179 - CcPI632755_05g018360.1 Cco05g1836 179464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1836 328 Pfam Peroxidase 46 291 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g1836 328 ProSitePatterns Peroxidases proximal heme-ligand signature. 185 195 IPR019793 -
Cco05g1836 328 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g1836 328 PRINTS Haem peroxidase superfamily signature 185 200 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g1836 328 PRINTS Haem peroxidase superfamily signature 137 149 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g1836 328 PRINTS Haem peroxidase superfamily signature 61 75 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g1836 328 PRINTS Haem peroxidase superfamily signature 247 262 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g1836 328 ProSiteProfiles Plant heme peroxidase family profile. 29 327 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g1836 328 FunFam Peroxidase 33 174 - -
Cco05g1836 328 PRINTS Plant peroxidase signature 245 260 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g1836 328 PRINTS Plant peroxidase signature 39 58 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g1836 328 PRINTS Plant peroxidase signature 99 112 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g1836 328 PRINTS Plant peroxidase signature 118 128 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g1836 328 PRINTS Plant peroxidase signature 63 83 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g1836 328 PRINTS Plant peroxidase signature 261 278 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g1836 328 PRINTS Plant peroxidase signature 301 314 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g1836 328 PRINTS Plant peroxidase signature 137 152 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g1836 328 PRINTS Plant peroxidase signature 184 196 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g1836 328 Gene3D Peroxidase, domain 2 163 306 - -
Cco05g1836 328 PANTHER - 17 325 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g1836 328 FunFam Peroxidase 163 306 - -
Cco05g1836 328 SUPERFAMILY Heme-dependent peroxidases 30 327 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g1836 328 Gene3D - 33 327 - -
Cco05g1836 328 CDD secretory_peroxidase 30 324 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1836 Cco-Chr5:27336552 Cco08g1594 Cco-Chr8:27503485 1.40E-63 dispersed
Cco05g1836 Cco-Chr5:27336552 Cco04g1824 Cco-Chr4:33083424 3.30E-65 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1836 K00430 - csv:101211842 582.022