Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1838 ATGGCTTCCCTCCGCCCATTTCTTTCCACTGCCCCTTTCTACCACGCGCCTAAGCCCACGCGCCTCACGAATAATTCTCTTCTTCTTCACCCTCCATCCTCTTCCTCGTTCAAATTAGTCGCCGACAAAAAGAGATTCGCGGTGCGCACTGGCGCCGTCGCAGGCGCCGAAACTGCAGCTCCGATCGGCGACCTTGACGATGATGGTCGGGTGGTTCTATTGGGTCCGGCGACCGACGAGGAGCCTGGCGATGAAGCTACGGCTGAGTACGACTGGACTAAAGAGTGGTATCCGTTGTACTTGACGCGGAATGTGCCGGAGGATGCTCCATTAGGGCTCACTGTGTTTGATAAGCAGTTGGTTTTGTACCGCGATGGAACCGGCGAGCTCCGCTGTCATGAAGATAGGTGCCCACACAGGCTAGCAAAGCTCTCTGAAGGCCAATTAATCGATGGCAAACTAGAATGCCTTTACCATGGCTGGCAATTTGAAGGTGAGGGGAAATGTGTGAAGATTCCTCAGCTTCCATCAGATGCCAAGATTCCTAGATCAGCATGTCTAAAAACATACGAGGTGAAGGACTCACAGGGAGTTGTATGGGTGTGGATGTCTTTGGAAAAGCCTCCAACCCTAAAGAAGATACCAAGGTTCGAGAACTTCGACCGGCCTGGTTTTCGGGACATTTCAAGTGTTCATGAGCTTCCTTATGATCATTCCATACTTCTTGAGAACCTTATGGATCCTGCACATATACCTATCTCCCACGATAGAACAGATTTTACAGCCAAAAGAGAAGATGCTCAGCCACTAGGATTTGAAGTTACCGAGCGTACGAACCGCGGTTTTGCCGGTCGGTGGGGCCGTGCTATAGATCAACCATTGCCAAACTTCTTAAGGTTCGAAGCACCTTGTGTCCTTCAGAATAACAGGGAAATTCCCAATGATAAAGGTGGGATGGATTACTTTACAGGACTTTTCCTTTGTAGACCTACAGGCCAAGGGAAATCCATGCTTATAGTGAGATTTGGTAGCACAAGAACATCTCTATTGGTAAAATTGCTACCAACATGGTTTATGCACCAAAATGCCTGCAAGGTTTTTGAGCAAGATATGGGATTTCTTTCGTCCCAAAATGAGGTTCTAATGAGAGAAAAAGTAGCTACCAAGGAACTCTATCTCAACTTACGATCGTCCGATACTTTTGTTCTCGAGTACCGACGATGGATGGACAAGGTCGGGAAGGGGATGCCATATTATTTTGGACACAGTACAATCTCATTGCCGAAACTGCCTGCCGTTGTCGAACACGCCCCAGTGGGACTAGTTGCTGGAGCTTCAGCTTCTGCTCCGGCTAAGGGGGGAATCGGAACTATGTATGCTCCGAACTTGTCGAACCGATATTTTCGACATATCATTCATTGCAGAAGTTGTAGCAATACTATCAAATCTTTTCAAACTTGGAACAAGGCTCTTTCTGCTATTGCCATCACATTGGTTGCATTGGCAATTTTGGTGAGTGGAAGGCAATGGAAAGCCCTCATTCTGTTGTCAGCAGCATTATGCTTTGGTGGAGCTTATGCTTGCTCAGCTATTGTGGCTTTAAATACTACAAATTTTATAAGAACTCACAGAAGGTTGTAA 1641 47.23 MASLRPFLSTAPFYHAPKPTRLTNNSLLLHPPSSSSFKLVADKKRFAVRTGAVAGAETAAPIGDLDDDGRVVLLGPATDEEPGDEATAEYDWTKEWYPLYLTRNVPEDAPLGLTVFDKQLVLYRDGTGELRCHEDRCPHRLAKLSEGQLIDGKLECLYHGWQFEGEGKCVKIPQLPSDAKIPRSACLKTYEVKDSQGVVWVWMSLEKPPTLKKIPRFENFDRPGFRDISSVHELPYDHSILLENLMDPAHIPISHDRTDFTAKREDAQPLGFEVTERTNRGFAGRWGRAIDQPLPNFLRFEAPCVLQNNREIPNDKGGMDYFTGLFLCRPTGQGKSMLIVRFGSTRTSLLVKLLPTWFMHQNACKVFEQDMGFLSSQNEVLMREKVATKELYLNLRSSDTFVLEYRRWMDKVGKGMPYYFGHSTISLPKLPAVVEHAPVGLVAGASASAPAKGGIGTMYAPNLSNRYFRHIIHCRSCSNTIKSFQTWNKALSAIAITLVALAILVSGRQWKALILLSAALCFGGAYACSAIVALNTTNFIRTHRRL 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27358079 27361199 + CcPI632755_05g018380.1 Cco05g1838 179466

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1838 546 Gene3D - 91 220 IPR036922 GO:0051537(InterPro)
Cco05g1838 546 Gene3D - 223 414 - -
Cco05g1838 546 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 54 497 IPR050584 GO:0005737(PANTHER)|GO:0009507(PANTHER)|GO:0016491(PANTHER)|GO:0045036(PANTHER)
Cco05g1838 546 SUPERFAMILY Bet v1-like 197 415 - -
Cco05g1838 546 Pfam Rieske [2Fe-2S] domain 95 177 IPR017941 GO:0051537(InterPro)
Cco05g1838 546 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 96 201 IPR017941 GO:0051537(InterPro)
Cco05g1838 546 SUPERFAMILY ISP domain 86 209 IPR036922 GO:0051537(InterPro)
Cco05g1838 546 Pfam Pheophorbide a oxygenase 300 385 IPR013626 GO:0010277(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1838 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1498 Cco-Chr3:29528322 Cco05g1838 Cco-Chr5:27358079 1.40E-29 dispersed
Cco03g1500 Cco-Chr3:29535713 Cco05g1838 Cco-Chr5:27358079 9.80E-35 dispersed
Cco05g1838 Cco-Chr5:27358079 Cco08g0704 Cco-Chr8:18533750 3.20E-28 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g610 Blo01g01424 Blo12g01041 Bda01g00654 . . Bpe02g00226 . Bma01g02181 . . . . Car09g00342 . . . Cpe06g00281 . . . . . . . Cla05g01660 Cam05g1771 Cec05g1779 Cco05g1838 Clacu05g1761 Cmu05g1647 Cre05g1775 Cone4ag1731 Cone7ag1650 . . Lsi04g01356 . . . . . . . . Bpe04g00097 . . Sed13g1947 . Cmo09g00395 Cma09g00393 . . . . . Bhi09g03043 Tan01g3529 Cmetu07g0445 . Hepe01g1944 Mch11g0480 . . . . . . . . . . . Cme07g00144
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009854 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 33