Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1847 ATGATCGAAATGAAAGATCGAACAATCGGTACTTCACAAAATGACTTTGTTCGAGATCAACACATATTCTCTTCAAAGGAAATCGCACCCCTGATTGTTTATGTTGTTGTGCCTCTACTGGAATGCCAGAATTTCATCGCCATGGGAAATGAATCAGGCGAATGTTGTGACCTTGAGCGGGTTGCTAAGGCTCATACGACAGGATGCTGTGATATCGAAGATGTCGCGCCAACTGAAAACTCCCAGCAATTCCCACTCCTCACTACACAACAACAAACAGAAGAAGGAATGGGTAGCCAAACTATTCCAAGCCATGAACGCTCCAGAACATATTGGACACCAGTAATGGAACGTTACTTTATTGATCTTATGTTGGAGCAGCTTCACCGAGGAAACCGGAGTGGGCACACTTTCAACAAGCAGGCATGGACGGATATGCTTACAATGTTCAATACAAAATTTGGATCTCAGTATGATAAAGATGTATTGAAGAGTCGCTATACAAATTTGTGGAAGCAATTCAACGATGTAAAGAATCTATTAGGTCATAGTGGTTTTTCCTGGGACGAAGGTCGACAGATGGTAATAGCTGATGACTATTTATGGGACATTTACATCAAGGCCCGTCCGGATGCACGATCCTATAAAACTAAAGCAGTACTAAATTTTAATGATTTATGCCTGATATATGGATACACTAATGCTGATGGAAGATACAGTCGATCAAGTCATGATATAGACTTTGATGATGAAGTCCAGGCTGTAAATACAGGTGATACCATTGGTTGCCCTGCACCTCCCGATCGTCCAAGGACAGATTGGACGCTAGAAATGGACCAGTATTTCATTGAGCTTATGCTGGATCAAGTAGGAAGAGGCAATAAGACGTCTAATACATTCAATAAGCAAGCATGGACTGATATGCTTGCATTGTTTAATGCTAAATTTGGTCCTCAACATGGTAAAAGGGTGTTAAGACACCGATATAAGAAATTATGGAAATACTACAGTGATATTATGAATCTACTTCAACAAAATGGATTTTGCTGGGATGAAGTACAGCAAATGGTGGTTGCTGCTGATGATATTTGGGATGCTTATGTTAAGACACACCCATTTGCACGAAGTTATAGAATGAAAGCCTTGCCAAACTACTATGACTTGGTTCTCATATATGGAAATGTAATTGATAATGAGAACCAGAATCATTTGCATCTAGATAAAAACCTTCCAGACGACATATCAGAGGTAAAGGGTGGAGAATCAAATGAGAATCAAATGACAACTGTCAGCGATCGTACAAGAACATATTGGACGCCCCCGATGGATCGTTACCTCATAGACTTGCTACTAGAACAGGTGCATAGGGGCAATAAAATAGGTCAAACATTTGTTAGTCATGCTTGGACTGACATGGTTACTGCTTTCAATGCCCAATTCAGAGCTCACCATGACAAGGATGTGCTGAAAAATCGATACAAACATTTGAGACGGTTGTATAATGAAATAAAGATTCTTCTCGAACAGAGAGGATTTTCATGGGATGAAAATCGTGAAATCGTTACTGCAGATGATCATTTTTGGGATGCTTATACCAAGGATCACCCTGATTCCCGATCATATAGAGTTAAAACTGTACCAAGCTATCACAAGTTATGTTTTATATTTGGTGAAGAAAGTTCTGACAGAAGATATAGTCGTTTGGCCCATGATACCGATCCAAGTAATGGAGTGCCTGTTCTGATGGCTGATGAAAGGAAAAATGATCAAGTCCCTGCTGAACCTTTACCCATGATAGATTGGACACCGCAGATGGATCGCTCTTTTATTGATCTTATGCTTGAACAATTGCAAGAAGGAAATACTTTTGGCCAAGCATTTAGCGAGCAAGCATGGACTCTCATGATTATATCATTCAATGAGAGGTTCAAACTTCAATGTGACAGATATGTTCTAGAAGATCGTTATTTCTGGTGGATGAAGCAATACAGCAACATCTACAATCTTCTCAATCGCAGGGGATTCATGTGGAATGAATCTCAACAATTGATTACTGCTGAGGATGAACTTTGGGAAGCTTATGGAAAGGAACATCCAGATGCCCTCTTGTACAAAGACAAATTCCTCGGCTACTATACGGATTTGTGCAAGATTTTTGGGAACCTTTTAGATAGAGTAGTCAATGGTCAGTGTACAGGCGAAACCGATGCTGAAAATGTGGAGATTAAGATGGGTGAAAATGAACACCTACTCCTAACATCGAGAGAGACTCAAAATTCTCAACAGAGAAAGCGTCCTGCAGAGACGATATCATTGGACGCAGAGCTCTCTAAGAAAGTGCATAGAACCGAGAACAACGTGCAGAAAGCTCTCTCTGAGATGGCAGGTGTAGTCACTAGATTGGTGAACATGAAACAGCACCATAACTATAAAGCTGTGGAAGGTGCTATTGATGCACTTCAAGCTATACCAGACATCGATGATGAACTTATGTTGGATGCTTGTGACCTCTTAGAAGATGAAAGGAAGGCAAAAACATTTGTGGCTTTGGATGCAACCCTGCGAAAGAAGTGGTTACTAAGAAAGCTTCGTTCGCAATAG 2601 40.52 MIEMKDRTIGTSQNDFVRDQHIFSSKEIAPLIVYVVVPLLECQNFIAMGNESGECCDLERVAKAHTTGCCDIEDVAPTENSQQFPLLTTQQQTEEGMGSQTIPSHERSRTYWTPVMERYFIDLMLEQLHRGNRSGHTFNKQAWTDMLTMFNTKFGSQYDKDVLKSRYTNLWKQFNDVKNLLGHSGFSWDEGRQMVIADDYLWDIYIKARPDARSYKTKAVLNFNDLCLIYGYTNADGRYSRSSHDIDFDDEVQAVNTGDTIGCPAPPDRPRTDWTLEMDQYFIELMLDQVGRGNKTSNTFNKQAWTDMLALFNAKFGPQHGKRVLRHRYKKLWKYYSDIMNLLQQNGFCWDEVQQMVVAADDIWDAYVKTHPFARSYRMKALPNYYDLVLIYGNVIDNENQNHLHLDKNLPDDISEVKGGESNENQMTTVSDRTRTYWTPPMDRYLIDLLLEQVHRGNKIGQTFVSHAWTDMVTAFNAQFRAHHDKDVLKNRYKHLRRLYNEIKILLEQRGFSWDENREIVTADDHFWDAYTKDHPDSRSYRVKTVPSYHKLCFIFGEESSDRRYSRLAHDTDPSNGVPVLMADERKNDQVPAEPLPMIDWTPQMDRSFIDLMLEQLQEGNTFGQAFSEQAWTLMIISFNERFKLQCDRYVLEDRYFWWMKQYSNIYNLLNRRGFMWNESQQLITAEDELWEAYGKEHPDALLYKDKFLGYYTDLCKIFGNLLDRVVNGQCTGETDAENVEIKMGENEHLLLTSRETQNSQQRKRPAETISLDAELSKKVHRTENNVQKALSEMAGVVTRLVNMKQHHNYKAVEGAIDALQAIPDIDDELMLDACDLLEDERKAKTFVALDATLRKKWLLRKLRSQ 866
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27408435 27414382 + CcPI632755_05g018470.1 Cco05g1847 179475

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1847 866 PANTHER EXPRESSED PROTEIN 103 254 - -
Cco05g1847 866 Pfam Myb/SANT-like DNA-binding domain 111 205 IPR024752 -
Cco05g1847 866 Pfam Myb/SANT-like DNA-binding domain 437 531 IPR024752 -
Cco05g1847 866 Pfam Myb/SANT-like DNA-binding domain 601 694 IPR024752 -
Cco05g1847 866 Pfam Myb/SANT-like DNA-binding domain 274 367 IPR024752 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1847 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1266 Cco-Chr3:25277940 Cco05g1847 Cco-Chr5:27408435 2.00E-18 dispersed
Cco03g1739 Cco-Chr3:32091971 Cco05g1847 Cco-Chr5:27408435 1.40E-97 dispersed
Cco03g1740 Cco-Chr3:32114476 Cco05g1847 Cco-Chr5:27408435 4.20E-111 dispersed
Cco05g1847 Cco-Chr5:27408435 Cco10g0534 Cco-Chr10:6359597 4.90E-07 dispersed
Cco10g0533 Cco-Chr10:6351799 Cco05g1847 Cco-Chr5:27408435 1.20E-06 dispersed
Cco05g1847 Cco-Chr5:27408435 Cco09g0533 Cco-Chr9:4661355 5.80E-93 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g595 . . . . Bpe02g01266 . . . . . . . Car09g00350 . . . Cpe06g00286 . . . . . . . Cla05g01667 Cam05g1782 Cec05g1788 Cco05g1847 Clacu05g1770 Cmu05g1655 Cre05g1784 Cone4ag1737 Cone7ag1657 Cone17ag0974 Cone20ag0315 . . . . . Blo18g00251 Bda01g01017 . . . . . . . Cmo09g00402 Cma09g00399 . . . . . Bhi09g03029 . . . . . . . . . . . . . . . . Cme07g00135
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006000 1 7 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 39