Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1850 ATGCCCGCGCTTACAAGCTCTGGTCGGCGCGCAAAGAGCTTTTCACTTCATCGGTCGACGGACAAAGCCATGGCTCGCCGCCATAGCCAAGCTCAACCGTCCTGTTGGAACCGTGTGCTACAGTTAATCGAGTGCTTTTTCATGCAATTTCTCGTGCGATTGGTCTCTCTCGTGATTGATATGGGTATATACCTCAGCAATCCCAAAACAGAGAAGTCCTCTGAAGACGGTGAGAATAGACGGCTTAGATATGGACTATCGTCTATGCAAGGATGGCGTGCCACAATGGAAGATGCTCATGCTGCAGTTCCTGATCTGGATGCCTGCACTTCCTTCTTTGGTGTTTATGATGGCCATGGAGGTAAGGTGGTTGCAAAATTCTGTGCCAAGTACCTACATCAGCAAGTGAAGAAAAATGAAACTTTTGCGGCTGGAGATATAGGAACTTCTGTGCAGAAAGCATTCTTCAGAATGGATGAAATGATGCGTGGACAAAGAGGATGGAGAGAATTAGCTGTTTTGGGTGATAGGTTGAACAAGTTCACTGGCATGATAGAAGGGTTAATCTGGTCTCCAAAAAGCAGTGATGCAAATGACCTGGCTGATGATTGGGCTTTTGAGGAGGGTCCACACTCTGATTTTACTGGCCCAACTTCCGGGTGTACAGCTTGTGTTGCAATTATTAGAAATAACAAACTAGTTGTTGCAAATGCTGGTGATTCTCGCTGTGTGCTATCAAGAAAGGGCCAGGCCCACAGTCTCTCTAGAGATCACAAGCCTGATCTTGAGGCTGAGAAGGATAGAATTCTGAAAGCTGGTGGTTTTATTCATGCTGGACGAGTCAATGGTAGCTTGAACCTTGCCAGAGCTATTGGTGACATGGAATTTAAGCAGAATAAATTTTTACCTGCTGAAAAGCAAATTATTACTGCAAACCCTGATGTAACCACTGTTGAGCTTTGCGACGATGATGAGTTTATTGTGATAGCTTGTGATGGTATATGGGATTGCATGTCTAACCAGCAACTGGTAGATTTTATACATGAACAGCTAAAATCAGAAACTAAACTCTCTGTGGTTGTTGAGAGAGTACTTGATAGGTGTTTGGCACCTTCCACTGCTGGTGGTGAGGGATGTGATAACATGACCATGATTTTGGTGCAGTTTAAGAAAGATAATCAATCAAACTCCTCCATAGATGGCCAAACTTCACCTGCCGCCACTGCCTGTGCCGACCCAGACAGTACCGAATCGATGCAGAAAGATGAATTGAGCCACAGACTTTGA 1287 44.99 MPALTSSGRRAKSFSLHRSTDKAMARRHSQAQPSCWNRVLQLIECFFMQFLVRLVSLVIDMGIYLSNPKTEKSSEDGENRRLRYGLSSMQGWRATMEDAHAAVPDLDACTSFFGVYDGHGGKVVAKFCAKYLHQQVKKNETFAAGDIGTSVQKAFFRMDEMMRGQRGWRELAVLGDRLNKFTGMIEGLIWSPKSSDANDLADDWAFEEGPHSDFTGPTSGCTACVAIIRNNKLVVANAGDSRCVLSRKGQAHSLSRDHKPDLEAEKDRILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLPAEKQIITANPDVTTVELCDDDEFIVIACDGIWDCMSNQQLVDFIHEQLKSETKLSVVVERVLDRCLAPSTAGGEGCDNMTMILVQFKKDNQSNSSIDGQTSPAATACADPDSTESMQKDELSHRL 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27433628 27442295 - CcPI632755_05g018500.1 Cco05g1850 179478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1850 428 SMART PP2C_4 73 387 IPR001932 -
Cco05g1850 428 SUPERFAMILY PP2C-like 63 390 IPR036457 -
Cco05g1850 428 MobiDBLite consensus disorder prediction 1 27 - -
Cco05g1850 428 PANTHER PROTEIN PHOSPHATASE 2C 68 390 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
Cco05g1850 428 Gene3D - 60 390 IPR036457 -
Cco05g1850 428 ProSiteProfiles PPM-type phosphatase domain profile. 83 389 IPR001932 -
Cco05g1850 428 MobiDBLite consensus disorder prediction 396 428 - -
Cco05g1850 428 MobiDBLite consensus disorder prediction 396 415 - -
Cco05g1850 428 CDD PP2Cc 83 389 IPR001932 -
Cco05g1850 428 ProSitePatterns PPM-type phosphatase domain signature. 112 120 IPR000222 GO:0043169(InterPro)
Cco05g1850 428 Pfam Protein phosphatase 2C 215 373 IPR001932 -
Cco05g1850 428 Pfam Protein phosphatase 2C 83 164 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1850 Cco-Chr5:27433628 Cco09g0324 Cco-Chr9:2817230 2.00E-163 dispersed
Cco05g1850 Cco-Chr5:27433628 Cco11g0681 Cco-Chr11:7413100 1.70E-21 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1850 K17499 - csv:101211604 686.026