Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1851 ATGCAGGCAGATCAGACGGTGATAAGTTTGAGACCTGGTGGTGGCGGTGGCTTTCGTGGAAGCAGATTTGTTACACCTCGCTTCGATTCATCCTCCGCCGACTCTTCGTCGCTTCGTCCACATGGCGGCGCTGCTTCAATCCTCAAGACTGGCGATCTACGGTTTGAAGGTCGTGAGCGAATGCAATACACTCGAGACCAGCTTCTGCAGCTTAGGGAGGTTGCAACAGTCCCTGAGGATATCTTGAAAGTCAAACTAGAAGTTGAGTCAGAGATAGTTGGGGAAGATCAAACATGGGCCCGTGCTGAAAGCAATCAGCAATCACAATCTCAAGGCCGTTACTTTGAGGCAGACAATCGAGATTGGCGTGGTCGATCTGGACAGTTACCCGGCTCCACAGAGGAAGGATCTTGGGAAGCAAATAAGGATTTGTCTGGACAATCTGAGTTGAGGTTCCAAGACTCAAATAATAGGAATCAAGTTTCTGGTAACCAAGGGGTTGGCACTGCACCTGCTCTCATCAAGGCTGAAGTTCCTTGGTCAGTTAGAAGAGGTAATATCTCAGATAAGGAACGAGTTTTGAAGACCGTTAAAGGTATACTGAATAAATTGACTCCAGAAAAGTTTGACATACTCAAAGGTCAACTGATTGACTCAGGAATTACATCCGCTGATATTTTGAAGGATGTTATATCGCTTATATTTGAGAAGGCCGTATTTGAGCCCACATTTTGCCCTATGTATGCACTTTTGTGCTCTGACCTCAATGAGAAGCTTCCTTCATTTCCATCCGAAGTGCCTGGAGAGAAAGATATCACTTTTAAACGTGTTCTCTTAAATATTTGCCAAGAGGCATTTGAAGGTGCTGATAACATGAGGGCAGAAATCAGACAGATGACTAGTCCTGAGCAGGAAACGGAAAGAAGAGATAAAGAAAGAATGGTTAAGCTTCGAACTCTAGGAAACATTCGCCTGATAGGTGAGCTTCTGAAACAGAAGATGGTGCCTGAAAAGATTGTTCACCATATTGTTCTGGAGCTCTTGGGGCCTGACCCTAAAATATGCCCTGCAGAGGAGAATGTCGAGGCTATTAGTCAGTTTTTTAACACAATAGGTAAGCAACTGGATGAGAGCCCAAAATCTCGACGGGTCAATGATGTATATTTCAGCCGGTTGAAGGAGCTCACTGCAAACACCCAATTAGCACCTAGGTTGAGATTTATGGTTCGTGATGTTCTTGATTTGCGGGCCAATAACTGGGTTCCTAGACGTGAAGAGGTGAAAGCGAAAACCATCACTGAAATTCATTCAGAGGCTGAAAAGAATCTAGGGCTCCGTCCAGGTTCAATGGCAATGATGAGAAATGGCCGTAATACCGAGGCACTTGGGGGATTAAGTCCTGGTGGTTTTCCAGTTGCCCGACCTGGCTTTGGAGGTATGATGCCTGGAATGCCTGGAACCAGGAAAATGCCTGGTATGCCTGGACTTGAGTCAGACAATTGGGAAGTTCCTAGATCCCGAGCAATGCCAAGGGGCGAAACCGGAGGTCCTACTGCGCGCGGCCAGTCATCATTAACGGGCAAAACACCTTCCATTAATTCAAAATATTTACCTCAGGGAAGTGGAGGTGTAATAACAGGGAAAACAAGTGCCTTGCTACAGGGTAGTGCTGCTGCATCTCCTGCCCGACCACCGAGTTCCATGCCTGGAACTCAGCCTGTTCCTCACAACCCTAAACCAGTTGCTCCAGTTACACCTATCATATCTTCGCCTCCAAAGCCTGCAGCTCCTGCTGCATCCAATCTGGTTGATCTTCGCAAGAAAACCGTTTCGCTGCTTGAGGAATACTTCAGCGTACGGATTCTTGATGAAGCTCTACAGTGTGTAGAGGAGCTGAAATCCCCAGCTTATCACCCTGAGGTTGTTAAAGAATCTCTTACCATTGCACTTGAGAAGATTCCACCATGTGTAGACCCAGTTGTTAAGCTTCTTGAGCACTTGCTTCACAAGAATGTCTTGACTGCAAAGGATATAGGTACCGGGTGCCTTCTATATGGGTCAATGATGGATGATATCGGCATCGATCTACCAAAAGCACCAAACAATTTCGGTGAGATTCTTGGGAAGTTAATTTTGATCAGAGGTCTGGATTTTGCTGTTGTGAAGGAGATTCTTAAGAAGGTGGAAGATAACTACTTTCAAAAATCCATTTTTGGTGGTGCTATGAAGATCCTCAACTCTAGCCCTTCTGGAGAAGGAATTCTGGCAACTCAAAGCGTTGAGATCCAGGCATGTGAGACTTTACTTGCGTGA 2313 45.96 MQADQTVISLRPGGGGGFRGSRFVTPRFDSSSADSSSLRPHGGAASILKTGDLRFEGRERMQYTRDQLLQLREVATVPEDILKVKLEVESEIVGEDQTWARAESNQQSQSQGRYFEADNRDWRGRSGQLPGSTEEGSWEANKDLSGQSELRFQDSNNRNQVSGNQGVGTAPALIKAEVPWSVRRGNISDKERVLKTVKGILNKLTPEKFDILKGQLIDSGITSADILKDVISLIFEKAVFEPTFCPMYALLCSDLNEKLPSFPSEVPGEKDITFKRVLLNICQEAFEGADNMRAEIRQMTSPEQETERRDKERMVKLRTLGNIRLIGELLKQKMVPEKIVHHIVLELLGPDPKICPAEENVEAISQFFNTIGKQLDESPKSRRVNDVYFSRLKELTANTQLAPRLRFMVRDVLDLRANNWVPRREEVKAKTITEIHSEAEKNLGLRPGSMAMMRNGRNTEALGGLSPGGFPVARPGFGGMMPGMPGTRKMPGMPGLESDNWEVPRSRAMPRGETGGPTARGQSSLTGKTPSINSKYLPQGSGGVITGKTSALLQGSAAASPARPPSSMPGTQPVPHNPKPVAPVTPIISSPPKPAAPAASNLVDLRKKTVSLLEEYFSVRILDEALQCVEELKSPAYHPEVVKESLTIALEKIPPCVDPVVKLLEHLLHKNVLTAKDIGTGCLLYGSMMDDIGIDLPKAPNNFGEILGKLILIRGLDFAVVKEILKKVEDNYFQKSIFGGAMKILNSSPSGEGILATQSVEIQACETLLA 770
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 27451518 27456672 - CcPI632755_05g018510.1 Cco05g1851 179479
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1851 770 SMART if4_15 194 419 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Cco05g1851 770 MobiDBLite consensus disorder prediction 99 115 - -
Cco05g1851 770 MobiDBLite consensus disorder prediction 486 537 - -
Cco05g1851 770 Gene3D - 602 758 - -
Cco05g1851 770 SMART ma3_7 605 717 IPR003891 -
Cco05g1851 770 FunFam Eukaryotic translation initiation factor isoform 4G-2 185 420 - -
Cco05g1851 770 MobiDBLite consensus disorder prediction 566 580 - -
Cco05g1851 770 SUPERFAMILY ARM repeat 601 756 IPR016024 -
Cco05g1851 770 Pfam MIF4G domain 194 419 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Cco05g1851 770 MobiDBLite consensus disorder prediction 517 537 - -
Cco05g1851 770 SUPERFAMILY ARM repeat 187 422 IPR016024 -
Cco05g1851 770 MobiDBLite consensus disorder prediction 1 44 - -
Cco05g1851 770 Pfam MA3 domain 605 716 IPR003891 -
Cco05g1851 770 ProSiteProfiles MI domain profile. 604 726 IPR003891 -
Cco05g1851 770 MobiDBLite consensus disorder prediction 553 580 - -
Cco05g1851 770 MobiDBLite consensus disorder prediction 25 39 - -
Cco05g1851 770 Gene3D - 185 420 - -
Cco05g1851 770 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 49 768 IPR045208 GO:0003729(PANTHER)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0016281(PANTHER)
Cco05g1851 770 MobiDBLite consensus disorder prediction 99 142 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1851 Cco-Chr5:27451518 Cco06g0891 Cco-Chr6:11127628 4.70E-46 dispersed
Cco05g1851 Cco-Chr5:27451518 Cco06g1442 Cco-Chr6:24881816 7.30E-281 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1851 K03260 - csv:101211356 1312.75