Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco05g1851 | ATGCAGGCAGATCAGACGGTGATAAGTTTGAGACCTGGTGGTGGCGGTGGCTTTCGTGGAAGCAGATTTGTTACACCTCGCTTCGATTCATCCTCCGCCGACTCTTCGTCGCTTCGTCCACATGGCGGCGCTGCTTCAATCCTCAAGACTGGCGATCTACGGTTTGAAGGTCGTGAGCGAATGCAATACACTCGAGACCAGCTTCTGCAGCTTAGGGAGGTTGCAACAGTCCCTGAGGATATCTTGAAAGTCAAACTAGAAGTTGAGTCAGAGATAGTTGGGGAAGATCAAACATGGGCCCGTGCTGAAAGCAATCAGCAATCACAATCTCAAGGCCGTTACTTTGAGGCAGACAATCGAGATTGGCGTGGTCGATCTGGACAGTTACCCGGCTCCACAGAGGAAGGATCTTGGGAAGCAAATAAGGATTTGTCTGGACAATCTGAGTTGAGGTTCCAAGACTCAAATAATAGGAATCAAGTTTCTGGTAACCAAGGGGTTGGCACTGCACCTGCTCTCATCAAGGCTGAAGTTCCTTGGTCAGTTAGAAGAGGTAATATCTCAGATAAGGAACGAGTTTTGAAGACCGTTAAAGGTATACTGAATAAATTGACTCCAGAAAAGTTTGACATACTCAAAGGTCAACTGATTGACTCAGGAATTACATCCGCTGATATTTTGAAGGATGTTATATCGCTTATATTTGAGAAGGCCGTATTTGAGCCCACATTTTGCCCTATGTATGCACTTTTGTGCTCTGACCTCAATGAGAAGCTTCCTTCATTTCCATCCGAAGTGCCTGGAGAGAAAGATATCACTTTTAAACGTGTTCTCTTAAATATTTGCCAAGAGGCATTTGAAGGTGCTGATAACATGAGGGCAGAAATCAGACAGATGACTAGTCCTGAGCAGGAAACGGAAAGAAGAGATAAAGAAAGAATGGTTAAGCTTCGAACTCTAGGAAACATTCGCCTGATAGGTGAGCTTCTGAAACAGAAGATGGTGCCTGAAAAGATTGTTCACCATATTGTTCTGGAGCTCTTGGGGCCTGACCCTAAAATATGCCCTGCAGAGGAGAATGTCGAGGCTATTAGTCAGTTTTTTAACACAATAGGTAAGCAACTGGATGAGAGCCCAAAATCTCGACGGGTCAATGATGTATATTTCAGCCGGTTGAAGGAGCTCACTGCAAACACCCAATTAGCACCTAGGTTGAGATTTATGGTTCGTGATGTTCTTGATTTGCGGGCCAATAACTGGGTTCCTAGACGTGAAGAGGTGAAAGCGAAAACCATCACTGAAATTCATTCAGAGGCTGAAAAGAATCTAGGGCTCCGTCCAGGTTCAATGGCAATGATGAGAAATGGCCGTAATACCGAGGCACTTGGGGGATTAAGTCCTGGTGGTTTTCCAGTTGCCCGACCTGGCTTTGGAGGTATGATGCCTGGAATGCCTGGAACCAGGAAAATGCCTGGTATGCCTGGACTTGAGTCAGACAATTGGGAAGTTCCTAGATCCCGAGCAATGCCAAGGGGCGAAACCGGAGGTCCTACTGCGCGCGGCCAGTCATCATTAACGGGCAAAACACCTTCCATTAATTCAAAATATTTACCTCAGGGAAGTGGAGGTGTAATAACAGGGAAAACAAGTGCCTTGCTACAGGGTAGTGCTGCTGCATCTCCTGCCCGACCACCGAGTTCCATGCCTGGAACTCAGCCTGTTCCTCACAACCCTAAACCAGTTGCTCCAGTTACACCTATCATATCTTCGCCTCCAAAGCCTGCAGCTCCTGCTGCATCCAATCTGGTTGATCTTCGCAAGAAAACCGTTTCGCTGCTTGAGGAATACTTCAGCGTACGGATTCTTGATGAAGCTCTACAGTGTGTAGAGGAGCTGAAATCCCCAGCTTATCACCCTGAGGTTGTTAAAGAATCTCTTACCATTGCACTTGAGAAGATTCCACCATGTGTAGACCCAGTTGTTAAGCTTCTTGAGCACTTGCTTCACAAGAATGTCTTGACTGCAAAGGATATAGGTACCGGGTGCCTTCTATATGGGTCAATGATGGATGATATCGGCATCGATCTACCAAAAGCACCAAACAATTTCGGTGAGATTCTTGGGAAGTTAATTTTGATCAGAGGTCTGGATTTTGCTGTTGTGAAGGAGATTCTTAAGAAGGTGGAAGATAACTACTTTCAAAAATCCATTTTTGGTGGTGCTATGAAGATCCTCAACTCTAGCCCTTCTGGAGAAGGAATTCTGGCAACTCAAAGCGTTGAGATCCAGGCATGTGAGACTTTACTTGCGTGA | 2313 | 45.96 | MQADQTVISLRPGGGGGFRGSRFVTPRFDSSSADSSSLRPHGGAASILKTGDLRFEGRERMQYTRDQLLQLREVATVPEDILKVKLEVESEIVGEDQTWARAESNQQSQSQGRYFEADNRDWRGRSGQLPGSTEEGSWEANKDLSGQSELRFQDSNNRNQVSGNQGVGTAPALIKAEVPWSVRRGNISDKERVLKTVKGILNKLTPEKFDILKGQLIDSGITSADILKDVISLIFEKAVFEPTFCPMYALLCSDLNEKLPSFPSEVPGEKDITFKRVLLNICQEAFEGADNMRAEIRQMTSPEQETERRDKERMVKLRTLGNIRLIGELLKQKMVPEKIVHHIVLELLGPDPKICPAEENVEAISQFFNTIGKQLDESPKSRRVNDVYFSRLKELTANTQLAPRLRFMVRDVLDLRANNWVPRREEVKAKTITEIHSEAEKNLGLRPGSMAMMRNGRNTEALGGLSPGGFPVARPGFGGMMPGMPGTRKMPGMPGLESDNWEVPRSRAMPRGETGGPTARGQSSLTGKTPSINSKYLPQGSGGVITGKTSALLQGSAAASPARPPSSMPGTQPVPHNPKPVAPVTPIISSPPKPAAPAASNLVDLRKKTVSLLEEYFSVRILDEALQCVEELKSPAYHPEVVKESLTIALEKIPPCVDPVVKLLEHLLHKNVLTAKDIGTGCLLYGSMMDDIGIDLPKAPNNFGEILGKLILIRGLDFAVVKEILKKVEDNYFQKSIFGGAMKILNSSPSGEGILATQSVEIQACETLLA | 770 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 27451518 | 27456672 | - | CcPI632755_05g018510.1 | Cco05g1851 | 179479 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco05g1851 | 770 | SMART | if4_15 | 194 | 419 | IPR003890 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
| Cco05g1851 | 770 | MobiDBLite | consensus disorder prediction | 99 | 115 | - | - | |
| Cco05g1851 | 770 | MobiDBLite | consensus disorder prediction | 486 | 537 | - | - | |
| Cco05g1851 | 770 | Gene3D | - | 602 | 758 | - | - | |
| Cco05g1851 | 770 | SMART | ma3_7 | 605 | 717 | IPR003891 | - | |
| Cco05g1851 | 770 | FunFam | Eukaryotic translation initiation factor isoform 4G-2 | 185 | 420 | - | - | |
| Cco05g1851 | 770 | MobiDBLite | consensus disorder prediction | 566 | 580 | - | - | |
| Cco05g1851 | 770 | SUPERFAMILY | ARM repeat | 601 | 756 | IPR016024 | - | |
| Cco05g1851 | 770 | Pfam | MIF4G domain | 194 | 419 | IPR003890 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
| Cco05g1851 | 770 | MobiDBLite | consensus disorder prediction | 517 | 537 | - | - | |
| Cco05g1851 | 770 | SUPERFAMILY | ARM repeat | 187 | 422 | IPR016024 | - | |
| Cco05g1851 | 770 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
| Cco05g1851 | 770 | Pfam | MA3 domain | 605 | 716 | IPR003891 | - | |
| Cco05g1851 | 770 | ProSiteProfiles | MI domain profile. | 604 | 726 | IPR003891 | - | |
| Cco05g1851 | 770 | MobiDBLite | consensus disorder prediction | 553 | 580 | - | - | |
| Cco05g1851 | 770 | MobiDBLite | consensus disorder prediction | 25 | 39 | - | - | |
| Cco05g1851 | 770 | Gene3D | - | 185 | 420 | - | - | |
| Cco05g1851 | 770 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA | 49 | 768 | IPR045208 | GO:0003729(PANTHER)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0016281(PANTHER) | |
| Cco05g1851 | 770 | MobiDBLite | consensus disorder prediction | 99 | 142 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco05g1851 | Cco-Chr5:27451518 | Cco06g0891 | Cco-Chr6:11127628 | 4.70E-46 | dispersed | |
| Cco05g1851 | Cco-Chr5:27451518 | Cco06g1442 | Cco-Chr6:24881816 | 7.30E-281 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco05g1851 | K03260 | - | csv:101211356 | 1312.75 |