Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1858 ATGGCTTCAGTCTCCCAGCTTCATTTCCCTCCCACGAACACGAAGGATGCGTGCGTCTTTTTGGTATCCCTTCTCCGTACTGTCATTACTCAAAAGCACAGTGAGGGTTTAATCTCCAAGACCTTGAAACTAATGGGGACATCAGGCGCAAAGGACGATATAGAGATGAATAGTGAGGGGGAAGACTTATCACCTGGAACGGATATGGATACAGATGATGACGATTATTATTCTGAGCCAGTCAACATACATGATCTGGGGGAAGCATTTCTAAATGATTTTTGTAAGAAGTCATCAATGGCATTTTTTAATCAGTACGGCCTTATCAGTCACCAAATCAACTCGTACAATGAGTTCATAAAAAGTGGTCTTCAGAAGGCCTTTGATTATTTTGGTGAGATTGTAGTTCAGCCAGGATATGACCCCTCTAAGAAAGGAGACGGGGAATGGAGATATGCTTCAGTGAAGTTTGGTAAGGTAACCCTCGATAAGCCAAAGTTCTGGGGTGGTGCAGCAAGTGGAAAAGAGTATAACATGCTTCCTAGGCATGCTCGACTTCAGAACATGACTTATTCATCAAGGATGAAAATGGAAATTAGTTTAGAGGTATATACTCAAAGGTTAGTCAGAAGCGACAAATTTAAAACTGGAAAAGATCAATATGTCGACAAGGAACATGTAACGGGAGGAGAGATCAGGGATATCTTTATAGGCAGGCTACCTGTGATGGTGAATTCTGACCTCTGCTGGATGAAGGATGAGCAGAAACGTGACTGTGAATTTGATCATGGGGGTTATTTTTTAATCAAAGGTGCAGAAAAAATATTTGTTGCTCAAGAGCAGAGTTGTTTGAGAAGACTCTGGATTTCTAATATTCAAGGCTGGACTGTGGCATACAGATCAGAAGTTAAGAGAAATAGACTAATTATTAGACTAGTTGAAAATTCCAAGTCTGAAGAACTAAGAAGCAAGGAGAAAGTCCTCAATGTATATTTTTTGTCCACAGAAGTTCCTGTGTGGATTTTATTCTTTGCTCTTGGTGTTTCGTCAGACAAAGAAATAGTAGATTTAATCGACTATGGCAGAGATGATCCGACTGTTCTGAATATTCTCTTTGCCTCTGTTCGTGAAGTTGATAATGATGATAAGTGGAAAGACTTTCGAAGAGGTAAAAGAGCACTGAATTTTTTGGACAATGAGGTTAAAAAGACAAGTTTTCCACCTGCTGAAAAAATTGAAGATTGCCTGAACCTATATCTTTTTGCCAGCTTGAAAGGCTTAAAGCAGAAGTGTCGTTTCCTTGGATATATGGTTAAATGTCTTCTGCAAGCCTATACTGGCCGGAGGAAATGTGATAATAGGGATGATTTCCGCAATAAGAGGTTTGAGTTGGCTGGAGAACTGCTTGAAAGAGAGATTAAAGTACATATTGCACATGCACGTAGGCGCATGGAAAAAGCTTTACAAAGGGACCTCTATGGGGATCGTGTAGTGCGCCAAATAGAACACTATTTCGATGCTTCAATAATCACTAATGGTCTATCCCGAGCATTCTCTACTGGAGCATGGGCACATTCATTTAAGAGGATGGAAAGGATTTCAGGTGTGGTTGCAACTCTTGGCCGTGCTAATCCCTTGCAGACAATGGCTGAATTGAGGAGAACACGTCAACAGGTTGCATACACTGGGAAAGTCGGTGATCAAAGATACCCGCATCCTTCTCACTGGGGAAGGGTTTGCTTCCTCTCCACTCCGGATGGTGAGAATTGTGGGCTTATTAAGAATTTGTCCGTCACAGGACTTGTAAGCTTAAACACATCAAAGCCCATAGTTCCCACATTGTTTCGATGTGGAATGGAGAATTTGGTGGATGATACGTTTACTTCTCTTAGTGGGAAGCACAAAATTTTTCTTGATGGGGAATGGGTTGGAGTTTGTGAAGATTCCCTTTCATTTGTAACGAAAGTGAGACGCAAGCGACGAAGGGATCCGTTGCTGCATCAGGTAGAAGTCAAAAGAGATGAACAGCTGAAAGAGGTACGTATATTTTCCGACGCTGGAAGGATATTACGTCCTCTCTTAGTTGTAGAGAACTTAAATAGGATTGATAAGTCTAAGGGAGAAAACTACACTTTTCAATCCCTTTTGGACAAGGGAATAATTGAACTTATTGGAACTGAAGAAGAAGAAGACTGTCGTACAGCTTGGAGTATTAAGCATCTTGCGGAACATGAAGGGACTACGAAATATTCCCATTGTGAACTTGATATGTCATTTTTATTAGGTTTAAGCTGCTCACTTGTCCCGTTTGCAAATCATGACCATGCTAGGAGGGCTCTGTTTCAATCCCAGAAGCACTCTAATCAAGCTATTGGATTTTCAACAACCAATTCTAATTTTCGTGTGGATACTTTATCCCACCAGTTACACTATCCACAAAGACCACTTTTTCGTACAATGACTGCTGATTGCCTTGGAACGCCTGGATACCTGTCATCTCACACCGGTATACTACCAAAACCTGAGTTCTATAATGGTCAGAATGCTATTGTGGCAGTCAATGTTCATCTGGGTTACAACCAAGAAGATTCATTAGTAATGAACAGGGCTTCTCTGGAGCGTGGCATGTTTCGGTCTGAGCATATCCGGAGTTACAAGGCTGAGGTAGATAATAAAGAATCTTCAGAGAAGAGGCGAAAATCTGATGATGTAATAAATTTTGGAAAAACTCAAAGTAAAATTGGAAGAGTTGACAGCTTAGACGAGGATGGCTTCCCTTACATCGGTGCAAATTTGCAGAGTGGGGACATTGTCATTGGTAGATGTGCAGAATCTGGGGCCGATCACAGTATCAAACTGAAGCACACTGAGAAGGGCATGGTTCAGAAAGTTGTGCTCTCTTCTAATGACGACGGGAAGAATTATGCTGTTGTATCCCTCCGACAGGTTCGATCTCCTTGTCTTGGAGACAAGTTTTCAAGTATGCATGGACAAAAGGGAGTTCTGGGGTTTTTGGAGTCTCAAGAGAATTTTCCCTTCACCATCCAGGGGATAGTTCCAGATATTGTTATAAATCCACATGCTTTTCCTTCGCGACAGACTCCTGGTCAACTATTGGAAGCGGCTCTCGGGAAAGGGATTGCTGCTGGCGGTTCTCTGAAATATGCGACGCCCTTCTCAACCCCTTCTGTTGATGCCATTACAGACCAGCTTCACAGGGCAGGGTTTTCAAGATGGGGAAGCGAGAGGGTTTACAATGGCCGAACTGGCGAAATGATGCGATCACTCATATTCATGGGTCCAACATTCTACCAGCGCTTAATCCACATGGCTGAAGACAAGGTTAAATTTCGCAACACTGGCCCTGTCCACCCTCTCACACGACAACCTGTTGCCGACCGAAAGCGTTTTGGCGGGATCAAGTTCGGAGAGATGGAACGTGATTGTCTTATAGCTCATGGTGCCTCGGCCAACTTGCACGAACGCCTATTTACCCTCAGTGATTCTTCCCAGATGCACGTTTGCCAGAAATGCAAGAACGTTGCAAGTGTGATTCAGCGATCGGTGGCTGGTGGTCGTAAGATAAGGGGTCCATATTGTCGGGTTTGCGAGTCGGTCGATGATATCGTGAGGGTAAATGTGCCGTATGGAGCCAAGTTGTTGTGCCAGGAGCTATTCAGCATGGGCATCAATCTCAAGTTCGAAACACAGCTGTGTTGA 3720 43.04 MASVSQLHFPPTNTKDACVFLVSLLRTVITQKHSEGLISKTLKLMGTSGAKDDIEMNSEGEDLSPGTDMDTDDDDYYSEPVNIHDLGEAFLNDFCKKSSMAFFNQYGLISHQINSYNEFIKSGLQKAFDYFGEIVVQPGYDPSKKGDGEWRYASVKFGKVTLDKPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKMEISLEVYTQRLVRSDKFKTGKDQYVDKEHVTGGEIRDIFIGRLPVMVNSDLCWMKDEQKRDCEFDHGGYFLIKGAEKIFVAQEQSCLRRLWISNIQGWTVAYRSEVKRNRLIIRLVENSKSEELRSKEKVLNVYFLSTEVPVWILFFALGVSSDKEIVDLIDYGRDDPTVLNILFASVREVDNDDKWKDFRRGKRALNFLDNEVKKTSFPPAEKIEDCLNLYLFASLKGLKQKCRFLGYMVKCLLQAYTGRRKCDNRDDFRNKRFELAGELLEREIKVHIAHARRRMEKALQRDLYGDRVVRQIEHYFDASIITNGLSRAFSTGAWAHSFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDQRYPHPSHWGRVCFLSTPDGENCGLIKNLSVTGLVSLNTSKPIVPTLFRCGMENLVDDTFTSLSGKHKIFLDGEWVGVCEDSLSFVTKVRRKRRRDPLLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRIDKSKGENYTFQSLLDKGIIELIGTEEEEDCRTAWSIKHLAEHEGTTKYSHCELDMSFLLGLSCSLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKESSEKRRKSDDVINFGKTQSKIGRVDSLDEDGFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKYATPFSTPSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVASVIQRSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQLC 1239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27494549 27502971 - CcPI632755_05g018580.1 Cco05g1858 179486

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1858 1239 Gene3D - 100 283 - -
Cco05g1858 1239 Gene3D - 452 629 - -
Cco05g1858 1239 CDD RNA_pol_B_RPB2 108 1235 IPR015712 GO:0003899(InterPro)|GO:0006351(InterPro)|GO:0032549(InterPro)
Cco05g1858 1239 Gene3D - 766 1122 IPR037033 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cco05g1858 1239 Pfam RNA polymerase Rpb2, domain 5 712 755 IPR007647 GO:0006351(InterPro)
Cco05g1858 1239 Gene3D RNA polymerase alpha subunit dimerisation domain 1123 1237 - -
Cco05g1858 1239 ProSitePatterns RNA polymerases beta chain signature. 989 1001 IPR007121 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cco05g1858 1239 Pfam RNA polymerase Rpb2, domain 3 540 599 IPR007645 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cco05g1858 1239 FunFam DNA-directed RNA polymerase subunit beta 100 284 - -
Cco05g1858 1239 Gene3D - 796 985 IPR014724 GO:0003899(InterPro)
Cco05g1858 1239 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 95 1236 - -
Cco05g1858 1239 Gene3D RNA polymerase Rpb2, domain 2 288 451 IPR037034 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cco05g1858 1239 Pfam RNA polymerase Rpb2, domain 4 636 697 IPR007646 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cco05g1858 1239 Pfam RNA polymerase Rpb2, domain 2 333 461 IPR007642 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cco05g1858 1239 FunFam DNA-directed RNA polymerase subunit beta 451 639 - -
Cco05g1858 1239 FunFam DNA-directed RNA polymerase subunit beta 1123 1237 - -
Cco05g1858 1239 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 100 1235 IPR015712 GO:0001055(PANTHER)|GO:0003899(PANTHER)|GO:0003899(InterPro)|GO:0005665(PANTHER)|GO:0006351(InterPro)|GO:0032549(InterPro)
Cco05g1858 1239 MobiDBLite consensus disorder prediction 51 71 - -
Cco05g1858 1239 Pfam RNA polymerase Rpb2, domain 6 765 1136 IPR007120 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cco05g1858 1239 FunFam DNA-directed RNA polymerase subunit beta 867 985 - -
Cco05g1858 1239 Pfam RNA polymerase Rpb2, domain 7 1138 1236 IPR007641 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cco05g1858 1239 Pfam RNA polymerase beta subunit 107 495 IPR007644 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1858 K16252 - - csv:101212812 2277.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1858 Cco-Chr5:27494549 Cco07g0001 Cco-Chr7:25076 2.10E-136 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g576 Blo01g01419 . Bda01g00661 . . Bpe02g00534 . Bma01g02175 . . Cma01g01667 . Car09g00358 . . . . . . . . . . . Cla05g01679 Cam05g1794 Cec05g1802 Cco05g1858 Clacu05g1781 Cmu05g1666 Cre05g1796 . . Cone17ag0982 . Lsi04g01338 . . . . . . . . . . . Sed13g1963 Cmo01g01716 Cmo09g00414 Cma09g00409 . Car01g01281 . . Cpe02g00323 Bhi09g03010 Tan01g3560 Cmetu07g2167 . Hepe01g1964 Mch11g0501 . . . . . . . . . . . Cme07g00123
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010517 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 32