Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1864 ATGTCGGACGAGGAGCACCACTTCGAATCTAAGGCCGACGCCGGAGCCTCCAAGACCTACCCACAGCAGGCTGGAACCATCCGGAAGAACGGCTACATCGTCATCAAGAACCGTCCATGCAAGGTGGTTGAGGTTTCAACTTCTAAGACAGGCAAGCACGGGCATGCTAAGTGTCACTTTGTTGGAATTGATATCTTCACTGCCAAGAAGCTCGAAGATATTGTTCCTTCATCCCACAATTGTGATGTGCCCCATGTTAATCGTACTGATTATCAGCTGATTGATATCTCTGAGGATGGATTTGTGAGTCTTTTAACTGACAATGGTAACACCAAGGATGATTTGAGGCTTCCAACTGATGATAACCTGCTCACTCAGATTAAGGATGGATTTGCTGAAGGAAAGGACCTTGTCGTGTCGGTGATGTCTGCCATGGGAGAGGAACAAATTTGTGCCCTGAAGGATATCGGCCCAAAGAATTAG 483 47.2 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27525561 27527605 - CcPI632755_05g018640.1 Cco05g1864 179492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1864 160 MobiDBLite consensus disorder prediction 1 21 - -
Cco05g1864 160 Pfam Translation initiation factor 5A-like, N-terminal 17 79 IPR048670 -
Cco05g1864 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Cco05g1864 160 FunFam Eukaryotic translation initiation factor 5A 86 158 - -
Cco05g1864 160 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Cco05g1864 160 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Cco05g1864 160 FunFam Eukaryotic translation initiation factor 5A 1 85 - -
Cco05g1864 160 NCBIfam translation initiation factor IF-5A 17 153 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
Cco05g1864 160 Gene3D - 1 85 IPR014722 -
Cco05g1864 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 157 IPR001884 GO:0003723(InterPro)|GO:0003746(PANTHER)|GO:0003746(InterPro)|GO:0006414(PANTHER)|GO:0043022(InterPro)|GO:0045901(InterPro)
Cco05g1864 160 SMART eIF_5a_2 85 154 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Cco05g1864 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Cco05g1864 160 Gene3D - 86 159 IPR012340 -
Cco05g1864 160 CDD S1_eIF5A 86 156 - -
Cco05g1864 160 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2662 Cco-Chr5:34678646 Cco05g1864 Cco-Chr5:27525561 4.10E-85 transposed
Cco05g1864 Cco-Chr5:27525561 Cco06g1428 Cco-Chr6:24805723 7.00E-85 wgd
Cco05g1864 Cco-Chr5:27525561 Cco08g1543 Cco-Chr8:27122943 2.40E-24 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1864 K03263 - mdm:103423800 323.168