Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1867 ATGGCTTTATTTCGCAAATTCTTTTATCGGAAGCCACCGGACGGGCTTTTAGAGATATCCGAAAGGGTTTATGTTTTCGACTGTTGCTTTACAACGGAGGTTTTGGAAGAAGACGAATACAAGGTCTATATTGGAGGGATTGTTGGGCAACTTCGTGAGAGTCTCACCGACGCTTCATTCATGGTGTTCAATTTCCGAGAAGGGGAGAATCATAGCCTCGTTACTAATATATTATCTGTATATGATATGACTGTCATGGACTATCCTCGACATTATGAAGGCTGTCCTCTACTCACTATGGAGATGATCCACCACTTTTTAAGATCCAGTGAAAGCTGGCTCTCACTTGGCCAACAGAATGTACTTTTGATGCACTGTGAAAGAGGGGGGTGGCCAGTCTTGGCTTTCATGTTGGCCGCTCTTCTGATTTACAGGAAGCAGTATGCTGGGGAGCAGAAAACTTTGGACATGATTTACAAGCAAGCACCGCGGGAACTTTTGCAGTTGATGTCACCTCTTAATCCATTGCCTTCACAGTTGAGGTATCTTCAATATGTATCAAGAAGAAATGTGGCCTCAGAATGGCCTCCTCTTGACAGGGCTCTTACTCTAGACTGCATAATTATTAGATTTATTCCTAATATGGATGGGGAGGGTGGTTGCCGCCCAATATTTAGAATATACGGACAGGATCCCTTTATGGCTGCTGATCGAACTTCCAAAGTATTGTTCTCAACCCCCAAAAAGAGTAAACTTGTTCGGCAGTATAAGCAGGTAGATTGTGAACTAGTTAAAATTGATATCCATTGCCATATCCAAGGTGATGTTGTTCTTGAATGTATAAGTTTGGACAATGATCTGGAAAGGGAGGAGATGATGTTTCGAGTTATGTTTAACACAGCATTTATAAGGTCAAATATTTTAATGCTTAACCGTGATGACATTGATATTTTATGGCACGCAAAGGATCAATTTCCAAAGGATTTCAGAGCAGAGGTTCTTTTTTCAGAGATGGATGCTTCCGCATCACTTATTTCAGTTGAGTTGCCAAATATTGAGGAGAAAGATGGTCTTCCAATTGAAGCATTTGCTAGAGTTCAAGAGATCTTTAGCAATGTGGACTGGCTAAGCCCAAAGGCAGATGCAGCTCTTAATGTGCTTCAGAAAATAACAGCTTCAAATTTACTTCAAGAGAAACTGGTTAGTTCCGGCTCTTTAGATAGAAACCAGTTGCTCGACTTATCTGTTGAAAAACTAATCTTGGAATCAGAGACATCTGAAGACAATATTGGAAGTCCCCGATTGAAGATACAGACAAAAAAATCTCAGCCTTCTTCCGAACTATCTCAGGCTGCAGGTTCAGAGAGATCAAAGATTGATCCCTCAGAATTGCAGGTTGCTCTCCAACTACCACCTCAGTCTAAAATCATCACCCAAAGAATACCTCAACCTTCATTGTCTACGCCGGCCTCCTTCCGTAGTTCTATGCAAGGTTCACCTCGCCCTATATTAAGATATCACAGTGCACCCTCAGCTCTTGGCATTACAGCTTTATTACAAGATCATTCCAATTTTAGTGGTAAAGAAGTCATACATCCAGCGACAATATCTTCACCATCATCTGCTTTGTTGAGTTCAAGTGGTCTAGATTCACTTAAAGATATTCGACCTTGTAAGCTTCCTATTTTGCCTCTCCCGCTAGCATTAGAGCCAAGATCTACATCAGAAAATTCTTCGACCACTGCATCAACTTCAACCACTCCCGATCCATTGTCACTTCACCAACTTTCTTTGAAACCTATTAAATCTTCAATTTCTCAACCTCCTCAAGCCACATCATGGGTGAGAAGTCAATTATCACCGTCTTCATTACAACCAACTTCTACATCTTTTCCTGAGGAGTCCCCACCCTCCTTCAATGAGAGCGAAGCTTCAAGAACCTCTTCCTCTTGTTTGTTAATATCATCTCCATCTTCTTGTACTAAGGAATCATTTTCCATCTCCACCCCTCCCCCTCCCCCCCCTCCTCCTCCCCTTCCCCATCTTGATTCACCTTTGGCTTTAGTAACTTCTCCGTCTTCTAGTAGGGAAAACGGTATTTTCCCATCCTCACCACAACCTCCTTCTACAACACTACTGTTATCCTCTACAAAGACATCAATTCCATCTGTTCCTCAATTTTCTTTGTCTGATGGTCGTCTAGTTTCTTCTCAGTCACCTAAAAAGAACTTGACGAGTGTCTCTCCCCCTCCCCCTCCTCCTCCTCCTCCTCCATGTTGTAGCCCTAACTTGGGCGCTAGTGTTGCCTCGCCAACACCAGTGCCCCCACCCCCACCTCCACCTCCTTCATGGAAGGATGCTACAGACACATTCATGCATGATCCCCCACCTCCACCTCCAGCCCCACCCTTGCCTCCATCTTCTTTCAGTTCAACATCTACTTGTGACTCTAGTATCACGCCTTTAGGGCCACCACCGCCGCCACCACCTCCTCCTAGTCATGCACCACAAGATTTTGCCACTGTAGTTAGGAACTTGATGGCTGTATCTGGCCCTCCACCTACCCCACCTCCCCCACCTCCCCCATCTCATTCTTCTCTAGATCCTAATACTGTATCTTCAGTACCGCCACCACCACCCCCTCCTAGTCTTGCACCAAATGTTTCTACAACTGTTAACTTGACACATGTCTCTGGCCCCCCTCCTCCTCCTCCACCACCTTTTGCAAATTCTGGTCCCACCTTATGTCCAGGTGCTGTAACGTCAGCTCCTCCTGCTCCGCCTCCTCCAGGTTTCTTAATGAAGGGTTCTGCAACACATGCTCCACCTGCACCCCCTCCTCCAGGTCTCAGCGGTAATAAACTCTCAAATGTCAATGGTACTTCCTCACAGTCTCACGTTGGCATTAATAACAGCAACATACCTTCTGTTCCTGGACCACCTTCCAGCGCTCTATTCAATGCCAAGGGACGGGGCCTTGGACGTTTGAACTCCAAAAACCAGTCTCAACCTAAAAGGTCCAATTTGAAGCCATATCATTGGTTAAAATTAACGAGGGCCATGCAAGGAAGCTTATGGGCAGAGACACAAAAGACTGATGAAGCTTCCAAAGCTCCGGAGTTTGACATGTCCGAACTTGAAAGTCTTTTCTCTGCAGCTGCACCAAATTCAGACTCGGGAGGTTCGGGTGGAAATTCAAATCGCCGAGCCTCAGGGCCAAAATCAGATAAAGTTCATTTGATTGAACTTCGACGGGCCTATAATTGTGAAATTATGCTTTCTAAAGTTAAGATTCCTTTGCCTGATATGATGTGTTCAGTCCTTGCATTGGATGATTCGGCATTAGATGTGGATCAGGTTGAGAACCTAATCAAGTTTTGTCCAACAAAGGAAGAAATGGAATTACTTAAGGGGTACAATGGGGATAAGGACAACTTGGGAAAATGTGAACAATTCTTTTTAGAGTTGATGAAAGTCCCACGAGTAGAGTCCAAGCTAAGGGTTTTTTCTTTCAAGATACAATTCCGATTGCAGGCCTCTGACCTTAGAAATAGTCTGAATACTATCAATTCGGCATCTGAAGAGATCAGAAGTTCGGTAAAGTTGAAAAGGGTAATGCAAACGATCCTTTCATTGGGTAATGCTTTGAACCACGGAACGGCCAGAGGTTCTGCTATTGGATTTCGACTTGATAGTCTCCTCAAACTCACTGATACACGAGCCAGAAACAATAAGATGACTCTTATGCATTATCTATGTAAGGTGCTTGCTGAAAAGCTGCCAGAACTTCTAGATTTTCCGAAGGACCTTGTTAGTTTGGAAGCTTCTACAAAGATACAACTGAAATACTTGGCAGAGGAAATGCAAGCCATAAGCAAAGGGCTTGAGAAGGTTGTTCAGGAATTGGCTAATTCAGAGAACGATGGGCTCGTTTCAGGAACTTTTTGCCGGACTTTAAAAGACTTTCTTTCTCATGCCGAGGCCGAAGTGAGGTCTCTTGCCTCTCTTTATTCTAATGTGGGTAGAAATGCTGATGCATTGGCTCTCTATTTCGGCGAAGATCCAGCACGTTGCCCTTTTGAGCAAGTTGTTTCTACACTGTTCAATTTCGTGAGGATGTTTGTGCGAGCGCATGAAGAAAACTGTAAGCAACTTGATTATGAAAAGAAGAAAGCACAGAAGGAAGCTGCAGAAAAGGAGAAGTTGAAACTCAATACCACAAAGAAGGAGTCAGGATTCCTGATGCAGACTCCAACCTAG 4260 44.04 MALFRKFFYRKPPDGLLEISERVYVFDCCFTTEVLEEDEYKVYIGGIVGQLRESLTDASFMVFNFREGENHSLVTNILSVYDMTVMDYPRHYEGCPLLTMEMIHHFLRSSESWLSLGQQNVLLMHCERGGWPVLAFMLAALLIYRKQYAGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYVSRRNVASEWPPLDRALTLDCIIIRFIPNMDGEGGCRPIFRIYGQDPFMAADRTSKVLFSTPKKSKLVRQYKQVDCELVKIDIHCHIQGDVVLECISLDNDLEREEMMFRVMFNTAFIRSNILMLNRDDIDILWHAKDQFPKDFRAEVLFSEMDASASLISVELPNIEEKDGLPIEAFARVQEIFSNVDWLSPKADAALNVLQKITASNLLQEKLVSSGSLDRNQLLDLSVEKLILESETSEDNIGSPRLKIQTKKSQPSSELSQAAGSERSKIDPSELQVALQLPPQSKIITQRIPQPSLSTPASFRSSMQGSPRPILRYHSAPSALGITALLQDHSNFSGKEVIHPATISSPSSALLSSSGLDSLKDIRPCKLPILPLPLALEPRSTSENSSTTASTSTTPDPLSLHQLSLKPIKSSISQPPQATSWVRSQLSPSSLQPTSTSFPEESPPSFNESEASRTSSSCLLISSPSSCTKESFSISTPPPPPPPPPLPHLDSPLALVTSPSSSRENGIFPSSPQPPSTTLLLSSTKTSIPSVPQFSLSDGRLVSSQSPKKNLTSVSPPPPPPPPPPCCSPNLGASVASPTPVPPPPPPPPSWKDATDTFMHDPPPPPPAPPLPPSSFSSTSTCDSSITPLGPPPPPPPPPSHAPQDFATVVRNLMAVSGPPPTPPPPPPPSHSSLDPNTVSSVPPPPPPPSLAPNVSTTVNLTHVSGPPPPPPPPFANSGPTLCPGAVTSAPPAPPPPGFLMKGSATHAPPAPPPPGLSGNKLSNVNGTSSQSHVGINNSNIPSVPGPPSSALFNAKGRGLGRLNSKNQSQPKRSNLKPYHWLKLTRAMQGSLWAETQKTDEASKAPEFDMSELESLFSAAAPNSDSGGSGGNSNRRASGPKSDKVHLIELRRAYNCEIMLSKVKIPLPDMMCSVLALDDSALDVDQVENLIKFCPTKEEMELLKGYNGDKDNLGKCEQFFLELMKVPRVESKLRVFSFKIQFRLQASDLRNSLNTINSASEEIRSSVKLKRVMQTILSLGNALNHGTARGSAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLAEKLPELLDFPKDLVSLEASTKIQLKYLAEEMQAISKGLEKVVQELANSENDGLVSGTFCRTLKDFLSHAEAEVRSLASLYSNVGRNADALALYFGEDPARCPFEQVVSTLFNFVRMFVRAHEENCKQLDYEKKKAQKEAAEKEKLKLNTTKKESGFLMQTPT 1419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27576127 27590125 + CcPI632755_05g018670.1 Cco05g1867 179495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1867 1419 MobiDBLite consensus disorder prediction 667 683 - -
Cco05g1867 1419 MobiDBLite consensus disorder prediction 571 666 - -
Cco05g1867 1419 MobiDBLite consensus disorder prediction 1053 1075 - -
Cco05g1867 1419 Pfam C2 domain of PTEN tumour-suppressor protein 199 337 IPR014020 -
Cco05g1867 1419 ProSiteProfiles Formin homology-2 (FH2) domain profile. 999 1400 IPR015425 -
Cco05g1867 1419 SUPERFAMILY Formin homology 2 domain (FH2 domain) 925 1394 - -
Cco05g1867 1419 MobiDBLite consensus disorder prediction 769 785 - -
Cco05g1867 1419 MobiDBLite consensus disorder prediction 850 886 - -
Cco05g1867 1419 MobiDBLite consensus disorder prediction 820 836 - -
Cco05g1867 1419 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Cco05g1867 1419 SMART it6_source 669 1419 IPR015425 -
Cco05g1867 1419 MobiDBLite consensus disorder prediction 430 461 - -
Cco05g1867 1419 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
Cco05g1867 1419 MobiDBLite consensus disorder prediction 430 456 - -
Cco05g1867 1419 Gene3D - 196 341 - -
Cco05g1867 1419 Gene3D Formin, FH2 domain 993 1385 IPR042201 -
Cco05g1867 1419 MobiDBLite consensus disorder prediction 745 762 - -
Cco05g1867 1419 Pfam Formin Homology 2 Domain 1001 1374 IPR015425 -
Cco05g1867 1419 MobiDBLite consensus disorder prediction 792 807 - -
Cco05g1867 1419 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Cco05g1867 1419 MobiDBLite consensus disorder prediction 952 980 - -
Cco05g1867 1419 MobiDBLite consensus disorder prediction 570 1014 - -
Cco05g1867 1419 Gene3D Protein tyrosine phosphatase superfamily 14 191 IPR029021 -
Cco05g1867 1419 MobiDBLite consensus disorder prediction 687 744 - -
Cco05g1867 1419 Coils Coil 1375 1410 - -
Cco05g1867 1419 PANTHER FORMIN-J 1 1400 IPR051144 -
Cco05g1867 1419 MobiDBLite consensus disorder prediction 994 1008 - -
Cco05g1867 1419 SMART PTEN_C2_2 197 337 IPR014020 -
Cco05g1867 1419 MobiDBLite consensus disorder prediction 1053 1071 - -
Cco05g1867 1419 MobiDBLite consensus disorder prediction 897 912 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1867 Cco-Chr5:27576127 Cco06g1795 Cco-Chr6:28351065 2.00E-154 dispersed
Cco07g0234 Cco-Chr7:2398977 Cco05g1867 Cco-Chr5:27576127 4.20E-260 transposed
Cco05g1867 Cco-Chr5:27576127 Cco06g1422 Cco-Chr6:24739804 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1867 K28090 - csv:101214019 2172.51