Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1869 ATGGAGGAGAGGCATGTTCTGTTTGGTAAATATGAGATTGGGAGATTGCTAGGGAAGGGAACTTTTGCTAAGGTTTATTATGGAAAAGAATTGGAATCTGGTGAAAGTGTAGCGATTAAGGTTTTAAATAAGGACCATGTCAAGAAGGAAGGGATGATGGAGCAGATCCAGCGCGAGATTTCTGTTATGCGTCTGGTTCGTCATCCGAACATTGTTGAGTTGAAGGAAGTAATGGCGACGAAGACGAAGATCTTCTTCGTTATGGATTATGTTCGCGGTGGTGAACTTTTTGCCAAAGTTGCTAGAGGAAAACTCAAGGAAGATGTGGCTCGGAAGTATTTCCAGCAGTTAATCAGCGCAGTTGATTACTGTCACAGCCGTGGAGTCTCTCATCGCGATTTGAAGCCGGAGAATCTTTTGCTGGATGAGAACGAAGATCTCAAGATCTCCGACTTTGGACTCTCCGCTTTACCGGAACAGCTTCGGAACGACGGTCTTCTCCACACGCAGTGCGGTACTCCGGCTTACGTCGCACCCGAAGTACTAAGAAGAAAGGGCTACGATGGAGCAAAAGCCGATATCTGGTCTTGCGGTGTGATTTTGTATGTTTTGTTAGCAGGATTCCTTCCATTTCAGGATGAGAACATCATGACTATGTATAAGAAAGTTTTCAAGGCCGAATTCGAATGTCCGCCATGGTTCTCCGCCGAATCGAAGCGTTTGATTTCGAAAATCCTCGTCGTAGATCCAGGAAGACGAATCACAATCGGAGCAATCACGCGAGTTCCTTGGTTCCGAAAAGATTTCTCGAGATCGCTCTCGTTCACGATGAAAGAAATAATCGCAGCCAAAGCAGAGGATTCCGATTCCGAGAGTCCAAAACTATCTACGCCAAAATTCTTTAATGCGTTCGAATTAATATCGTCGATGTCGTCCGGATTCGATCTGTCGAGTTTATTCGAGAACAAAAGGAAGTCAGGATCCATGTTCACATCGCGATGCTCAGTATCGACGATAATGGAGAAGATCGAGACGGTGGCGAAGAAACTGAGCTTCAAGGTATCGGAAGTAAAAGATTTCAAGGTCCGGCTGCAAGGTCCGGCGGAGGGGCGAAAAGGAATACTGTCTGTGACGGCAGAGGTGTTCGAAATAGCGCCGGAAGTTGCGATAGTGGAATTCTCAAAGTCGTCCGGCGATACTCTGGAATATTCGAAGTTCTGTGAAGAAGACGTCCGGCCGGCGCTGAAAGACATCGTTTGGACGTGGCAAGGTGAATGTGTCCCTAACGTTGACGGACGTCACGGCCAATTTGACGGCGACGGATTTTTATGA 1332 46.77 MEERHVLFGKYEIGRLLGKGTFAKVYYGKELESGESVAIKVLNKDHVKKEGMMEQIQREISVMRLVRHPNIVELKEVMATKTKIFFVMDYVRGGELFAKVARGKLKEDVARKYFQQLISAVDYCHSRGVSHRDLKPENLLLDENEDLKISDFGLSALPEQLRNDGLLHTQCGTPAYVAPEVLRRKGYDGAKADIWSCGVILYVLLAGFLPFQDENIMTMYKKVFKAEFECPPWFSAESKRLISKILVVDPGRRITIGAITRVPWFRKDFSRSLSFTMKEIIAAKAEDSDSESPKLSTPKFFNAFELISSMSSGFDLSSLFENKRKSGSMFTSRCSVSTIMEKIETVAKKLSFKVSEVKDFKVRLQGPAEGRKGILSVTAEVFEIAPEVAIVEFSKSSGDTLEYSKFCEEDVRPALKDIVWTWQGECVPNVDGRHGQFDGDGFL 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27617417 27618748 - CcPI632755_05g018690.1 Cco05g1869 179497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1869 443 CDD CIPK_C 302 416 - -
Cco05g1869 443 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Cco05g1869 443 Pfam NAF domain 298 354 IPR004041 GO:0007165(InterPro)
Cco05g1869 443 Pfam Protein kinase domain 11 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g1869 443 SMART serkin_6 11 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g1869 443 FunFam Non-specific serine/threonine protein kinase 2 90 - -
Cco05g1869 443 FunFam Non-specific serine/threonine protein kinase 4 298 - -
Cco05g1869 443 Gene3D Kinase associated domain 1, KA1 296 421 - -
Cco05g1869 443 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524(InterPro)
Cco05g1869 443 Gene3D Transferase(Phosphotransferase) domain 1 91 271 - -
Cco05g1869 443 Coils Coil 39 59 - -
Cco05g1869 443 CDD STKc_SnRK3 10 264 - -
Cco05g1869 443 ProSiteProfiles Protein kinase domain profile. 11 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g1869 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g1869 443 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 413 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cco05g1869 443 ProSiteProfiles NAF domain profile. 296 321 IPR018451 GO:0007165(InterPro)
Cco05g1869 443 SUPERFAMILY Protein kinase-like (PK-like) 7 286 IPR011009 -
Cco05g1869 443 FunFam Non-specific serine/threonine protein kinase 296 420 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1869 Cco-Chr5:27617417 Cco08g1342 Cco-Chr8:25286084 2.60E-105 dispersed
Cco02g2259 Cco-Chr2:35144687 Cco05g1869 Cco-Chr5:27617417 1.60E-35 transposed
Cco10g1280 Cco-Chr10:25700627 Cco05g1869 Cco-Chr5:27617417 2.30E-175 transposed
Cco05g1869 Cco-Chr5:27617417 Cco06g1418 Cco-Chr6:24685348 3.60E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86859 PF00069 Pkinase 1.30E-74 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1869 - - - 0.0