Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1878 ATGACGGTTGAACCTAGACTCGATGACCCAATTGACCAATTTCCCACTGGAATGCGTGTTCTCGCTGTTGACGACGATCCCACTTGTCTTTTGATCTTGGAGACTTTGCTTCGTCGTTGCCAGTATCATGTCACTACAACTAATCAGGCTATTATGGCACTCAAGTTGCTGAGGGAGAACAAGAACAAGTTTGATGTGGTTATCAGTGATGTTCACATGCCTGACATGGATGGATTTAAGCTGCTGGAGCTTGTTGGGCTGGAGATGGACCTGCCTGTTATTATGCTTTCTGCAAATGGAGATCCCAAACTTGTTATGAAAGGAATTACTCATGGAGCATGTGATTACTTGTTGAAACCTGTTCGCATTGAGGAGCTAAAGAACATTTGGCAGCATGTAATCAGAAGAAAGAAATTTGATCCAAAGGACCGAATGAATTCTGGCAATCAGGACAGGCCTGATTCTGAAAATGGCGAAGAAGCTGCAGATCCAAATGGGAAATTTAATAAAAAAAGGAAGGACCAGAACTATAACGAAGATGATGACCAGGACTATGGGCAAGAGAATGATGACTCATCGACCCAGAAGAAGCCTCGTGTTGTTTGGTCCGTGGAGCTGCATAGGAAGTTTGTAAATGCTGTCAACCAGTTAGGCATAGACAAGGCAGTGCCTAAAAAGATTTTGGACTTGATGAATGTCGAAAAGCTCACAAGAGAAAATGTAGCTAGCCATCTCCAGAAATACAGGCTTTATCTAAAGAGAATCAGCTGTGTGGCAAACCAGCAAGCTAACATGGTGACTGCATTGAGCAGCGCAGATCCTTCTTATTTGAGAATTGGTTCCCTTAGCGGAATTGGGAATTTCCATTCTTTGACTGGACCTCCACAGTTTCCTAACACTGCTTATAGATCTATCCCAACCACCGGGATGCTTGGTCGATTGAATTCTCCTGCTTGTATGGGTATGCATGGCCTTTCTTCCCCGGGAACAGTCCAACTCAGTAATTTGAACAATTCAAGCAATGATCAGACTACATTTCAGCCAATCATGCTTTCTGGAAACCGTAGTGGGAATATTTTCCGGGGAATGCCTGAGCCATCGGAAATCGATCAACTACAACATGTTAAACATGGGACTCATGCGGACAGTCTCTCTTCTGCTTTTGATGAGAGAACAGTATTTCCTGCTTCCATTGGCCTCCCAAATGCTGCAAACATGTCTTCCAGTACTCTAAGTAATCCTCTTTTAGGATTAACTAATGATCCCTTGATTTCAGAAGTCCAGCATCATGAAGTGAATGGTGGTAGAAAATTTGGAACTCCATCTTCCATTTCGGTAGTATCTTCAAATTCAGATAGCTCACATCCTTCACTAGATAATGTTAGATGCACCGGTGACAATTGGTCGAACGCTGTTCATTCATCTAGGGTGCACTTGAATACAATTCCATCGAGCAACCTTTCTAATGTTGCTACTTCCTACCATAGTCAGTTGAGAGACAATACTACCAGTGGATTGCATATAGGAAATTGTCTTTCTGACATTTCTTCTATTACTTCAATATCTACTCAGTCCCATGATTCAAGAATAGATTCTCAACGTCAAGCAGCCACAACTAGCAACAGGTTTGATCAAATGATCTCAAAGGTTCCTGTTCAAGATTGGAATGATCATAAAGAGGATTCCTATTACCACACAACTATGGCCTGTAGCTCATCAAATTCTTTGATACCAGTGAATGGTGCTGCAGAGACTTTGCCCAAGCGCTTGGAAAATCAGAACCTAATCTTCTCCAGCAGCAAGGATTTTAATGTGACTAGTCAAGCAAATGTTCTTGACCATGCAATGGTGGAACATGATCAATTCAAGAAATCAACCATGGAGACATCACTCATGTTGAAACAAGGGTACCTGTATGATCATCAGCAAAAGATGCAATCTAGACTATCATCAAGTAACTGCGGCTCCTTGGAAGACATAGCATGTGCAATGATGAAACAGGAACAAGATGATGGAAAATTATTGGAAGGAGACTTTGGATGTGATAGTTATCCCATCGGAACATGCATGTGA 2073 42.06 MTVEPRLDDPIDQFPTGMRVLAVDDDPTCLLILETLLRRCQYHVTTTNQAIMALKLLRENKNKFDVVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKFDPKDRMNSGNQDRPDSENGEEAADPNGKFNKKRKDQNYNEDDDQDYGQENDDSSTQKKPRVVWSVELHRKFVNAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVTALSSADPSYLRIGSLSGIGNFHSLTGPPQFPNTAYRSIPTTGMLGRLNSPACMGMHGLSSPGTVQLSNLNNSSNDQTTFQPIMLSGNRSGNIFRGMPEPSEIDQLQHVKHGTHADSLSSAFDERTVFPASIGLPNAANMSSSTLSNPLLGLTNDPLISEVQHHEVNGGRKFGTPSSISVVSSNSDSSHPSLDNVRCTGDNWSNAVHSSRVHLNTIPSSNLSNVATSYHSQLRDNTTSGLHIGNCLSDISSITSISTQSHDSRIDSQRQAATTSNRFDQMISKVPVQDWNDHKEDSYYHTTMACSSSNSLIPVNGAAETLPKRLENQNLIFSSSKDFNVTSQANVLDHAMVEHDQFKKSTMETSLMLKQGYLYDHQQKMQSRLSSSNCGSLEDIACAMMKQEQDDGKLLEGDFGCDSYPIGTCM 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27815117 27819518 - CcPI632755_05g018780.1 Cco05g1878 179506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1878 690 SMART REC_2 18 130 IPR001789 GO:0000160(InterPro)
Cco05g1878 690 NCBIfam myb-like DNA-binding domain, SHAQKYF class 197 250 IPR006447 GO:0003677(InterPro)
Cco05g1878 690 MobiDBLite consensus disorder prediction 141 180 - -
Cco05g1878 690 FunFam Two-component response regulator 193 256 - -
Cco05g1878 690 Pfam Myb-like DNA-binding domain 199 249 IPR001005 -
Cco05g1878 690 Gene3D - 193 256 - -
Cco05g1878 690 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 194 253 IPR017930 -
Cco05g1878 690 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160(InterPro)
Cco05g1878 690 CDD REC_typeB_ARR-like 20 134 - -
Cco05g1878 690 Gene3D - 17 152 - -
Cco05g1878 690 MobiDBLite consensus disorder prediction 141 196 - -
Cco05g1878 690 FunFam Two-component response regulator 18 176 - -
Cco05g1878 690 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160(InterPro)
Cco05g1878 690 PANTHER TWO-COMPONENT RESPONSE REGULATOR 16 380 IPR045279 GO:0009736(InterPro)
Cco05g1878 690 SUPERFAMILY Homeodomain-like 194 254 IPR009057 -
Cco05g1878 690 PIRSF RR_ARR_type-B 1 690 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Cco05g1878 690 SUPERFAMILY CheY-like 16 142 IPR011006 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0621 Cco-Chr1:6275617 Cco05g1878 Cco-Chr5:27815117 2.90E-20 dispersed
Cco03g0134 Cco-Chr3:1297957 Cco05g1878 Cco-Chr5:27815117 3.90E-21 dispersed
Cco05g0752 Cco-Chr5:6184748 Cco05g1878 Cco-Chr5:27815117 6.20E-87 dispersed
Cco05g1878 Cco-Chr5:27815117 Cco11g0371 Cco-Chr11:3717960 1.60E-106 dispersed
Cco05g1878 Cco-Chr5:27815117 Cco06g1405 Cco-Chr6:24515754 4.30E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59324 PF00072 Response_reg 8.90E-23 CL0304 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1878 K14491 - csv:101215220 1263.83