Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g1878 | ATGACGGTTGAACCTAGACTCGATGACCCAATTGACCAATTTCCCACTGGAATGCGTGTTCTCGCTGTTGACGACGATCCCACTTGTCTTTTGATCTTGGAGACTTTGCTTCGTCGTTGCCAGTATCATGTCACTACAACTAATCAGGCTATTATGGCACTCAAGTTGCTGAGGGAGAACAAGAACAAGTTTGATGTGGTTATCAGTGATGTTCACATGCCTGACATGGATGGATTTAAGCTGCTGGAGCTTGTTGGGCTGGAGATGGACCTGCCTGTTATTATGCTTTCTGCAAATGGAGATCCCAAACTTGTTATGAAAGGAATTACTCATGGAGCATGTGATTACTTGTTGAAACCTGTTCGCATTGAGGAGCTAAAGAACATTTGGCAGCATGTAATCAGAAGAAAGAAATTTGATCCAAAGGACCGAATGAATTCTGGCAATCAGGACAGGCCTGATTCTGAAAATGGCGAAGAAGCTGCAGATCCAAATGGGAAATTTAATAAAAAAAGGAAGGACCAGAACTATAACGAAGATGATGACCAGGACTATGGGCAAGAGAATGATGACTCATCGACCCAGAAGAAGCCTCGTGTTGTTTGGTCCGTGGAGCTGCATAGGAAGTTTGTAAATGCTGTCAACCAGTTAGGCATAGACAAGGCAGTGCCTAAAAAGATTTTGGACTTGATGAATGTCGAAAAGCTCACAAGAGAAAATGTAGCTAGCCATCTCCAGAAATACAGGCTTTATCTAAAGAGAATCAGCTGTGTGGCAAACCAGCAAGCTAACATGGTGACTGCATTGAGCAGCGCAGATCCTTCTTATTTGAGAATTGGTTCCCTTAGCGGAATTGGGAATTTCCATTCTTTGACTGGACCTCCACAGTTTCCTAACACTGCTTATAGATCTATCCCAACCACCGGGATGCTTGGTCGATTGAATTCTCCTGCTTGTATGGGTATGCATGGCCTTTCTTCCCCGGGAACAGTCCAACTCAGTAATTTGAACAATTCAAGCAATGATCAGACTACATTTCAGCCAATCATGCTTTCTGGAAACCGTAGTGGGAATATTTTCCGGGGAATGCCTGAGCCATCGGAAATCGATCAACTACAACATGTTAAACATGGGACTCATGCGGACAGTCTCTCTTCTGCTTTTGATGAGAGAACAGTATTTCCTGCTTCCATTGGCCTCCCAAATGCTGCAAACATGTCTTCCAGTACTCTAAGTAATCCTCTTTTAGGATTAACTAATGATCCCTTGATTTCAGAAGTCCAGCATCATGAAGTGAATGGTGGTAGAAAATTTGGAACTCCATCTTCCATTTCGGTAGTATCTTCAAATTCAGATAGCTCACATCCTTCACTAGATAATGTTAGATGCACCGGTGACAATTGGTCGAACGCTGTTCATTCATCTAGGGTGCACTTGAATACAATTCCATCGAGCAACCTTTCTAATGTTGCTACTTCCTACCATAGTCAGTTGAGAGACAATACTACCAGTGGATTGCATATAGGAAATTGTCTTTCTGACATTTCTTCTATTACTTCAATATCTACTCAGTCCCATGATTCAAGAATAGATTCTCAACGTCAAGCAGCCACAACTAGCAACAGGTTTGATCAAATGATCTCAAAGGTTCCTGTTCAAGATTGGAATGATCATAAAGAGGATTCCTATTACCACACAACTATGGCCTGTAGCTCATCAAATTCTTTGATACCAGTGAATGGTGCTGCAGAGACTTTGCCCAAGCGCTTGGAAAATCAGAACCTAATCTTCTCCAGCAGCAAGGATTTTAATGTGACTAGTCAAGCAAATGTTCTTGACCATGCAATGGTGGAACATGATCAATTCAAGAAATCAACCATGGAGACATCACTCATGTTGAAACAAGGGTACCTGTATGATCATCAGCAAAAGATGCAATCTAGACTATCATCAAGTAACTGCGGCTCCTTGGAAGACATAGCATGTGCAATGATGAAACAGGAACAAGATGATGGAAAATTATTGGAAGGAGACTTTGGATGTGATAGTTATCCCATCGGAACATGCATGTGA | 2073 | 42.06 | MTVEPRLDDPIDQFPTGMRVLAVDDDPTCLLILETLLRRCQYHVTTTNQAIMALKLLRENKNKFDVVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKFDPKDRMNSGNQDRPDSENGEEAADPNGKFNKKRKDQNYNEDDDQDYGQENDDSSTQKKPRVVWSVELHRKFVNAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVTALSSADPSYLRIGSLSGIGNFHSLTGPPQFPNTAYRSIPTTGMLGRLNSPACMGMHGLSSPGTVQLSNLNNSSNDQTTFQPIMLSGNRSGNIFRGMPEPSEIDQLQHVKHGTHADSLSSAFDERTVFPASIGLPNAANMSSSTLSNPLLGLTNDPLISEVQHHEVNGGRKFGTPSSISVVSSNSDSSHPSLDNVRCTGDNWSNAVHSSRVHLNTIPSSNLSNVATSYHSQLRDNTTSGLHIGNCLSDISSITSISTQSHDSRIDSQRQAATTSNRFDQMISKVPVQDWNDHKEDSYYHTTMACSSSNSLIPVNGAAETLPKRLENQNLIFSSSKDFNVTSQANVLDHAMVEHDQFKKSTMETSLMLKQGYLYDHQQKMQSRLSSSNCGSLEDIACAMMKQEQDDGKLLEGDFGCDSYPIGTCM | 690 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 27815117 | 27819518 | - | CcPI632755_05g018780.1 | Cco05g1878 | 179506 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g1878 | 690 | SMART | REC_2 | 18 | 130 | IPR001789 | GO:0000160(InterPro) | |
Cco05g1878 | 690 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 197 | 250 | IPR006447 | GO:0003677(InterPro) | |
Cco05g1878 | 690 | MobiDBLite | consensus disorder prediction | 141 | 180 | - | - | |
Cco05g1878 | 690 | FunFam | Two-component response regulator | 193 | 256 | - | - | |
Cco05g1878 | 690 | Pfam | Myb-like DNA-binding domain | 199 | 249 | IPR001005 | - | |
Cco05g1878 | 690 | Gene3D | - | 193 | 256 | - | - | |
Cco05g1878 | 690 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 194 | 253 | IPR017930 | - | |
Cco05g1878 | 690 | Pfam | Response regulator receiver domain | 20 | 128 | IPR001789 | GO:0000160(InterPro) | |
Cco05g1878 | 690 | CDD | REC_typeB_ARR-like | 20 | 134 | - | - | |
Cco05g1878 | 690 | Gene3D | - | 17 | 152 | - | - | |
Cco05g1878 | 690 | MobiDBLite | consensus disorder prediction | 141 | 196 | - | - | |
Cco05g1878 | 690 | FunFam | Two-component response regulator | 18 | 176 | - | - | |
Cco05g1878 | 690 | ProSiteProfiles | Response regulatory domain profile. | 19 | 134 | IPR001789 | GO:0000160(InterPro) | |
Cco05g1878 | 690 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 16 | 380 | IPR045279 | GO:0009736(InterPro) | |
Cco05g1878 | 690 | SUPERFAMILY | Homeodomain-like | 194 | 254 | IPR009057 | - | |
Cco05g1878 | 690 | PIRSF | RR_ARR_type-B | 1 | 690 | IPR017053 | GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro) | |
Cco05g1878 | 690 | SUPERFAMILY | CheY-like | 16 | 142 | IPR011006 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g0621 | Cco-Chr1:6275617 | Cco05g1878 | Cco-Chr5:27815117 | 2.90E-20 | dispersed | |
Cco03g0134 | Cco-Chr3:1297957 | Cco05g1878 | Cco-Chr5:27815117 | 3.90E-21 | dispersed | |
Cco05g0752 | Cco-Chr5:6184748 | Cco05g1878 | Cco-Chr5:27815117 | 6.20E-87 | dispersed | |
Cco05g1878 | Cco-Chr5:27815117 | Cco11g0371 | Cco-Chr11:3717960 | 1.60E-106 | dispersed | |
Cco05g1878 | Cco-Chr5:27815117 | Cco06g1405 | Cco-Chr6:24515754 | 4.30E-139 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59324 | PF00072 | Response_reg | 8.90E-23 | CL0304 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g1878 | K14491 | - | csv:101215220 | 1263.83 |