Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1884 ATGGCCAGACCGCAAAAGCGCTACCGTGGTGTAAGACAAAGGCATTGGGGCTCTTGGGTTTCTGAAATTCGTCATCCTTTATTGAAAACAAGAATTTGGCTGGGAACATTTGAAACCGCGGAAGATGCTGCGAGAGCTTATGATGAAGCTGCAAGATTAATGTGTGGCCCAAAAGCAAGAACGAATTTTCCATACAATCCAAATGCAATTCAATCCTCGAATTCGAGGATTTTATCGGCTAATTTGACTGCGAAATTGCATAGGTGTTATATGGCTTCTTTGCAGATTAGTAACCAAGCTTCGGGGGAGTTTAAAAGAGACATTCCGGCGGTATTTCCGGCATCAACGCCGCTACCTCATGCGGTTGTTGGCGCCGGTGTGGCCAGTTCGGCGGTGGAGGAGAGTGGACCGGCGGCTGAGCAAGGGCCGTGTGCGGCGGATTGGATGGTGAGAAGTGTGAAAATGGAAAGTGAATTTGGGGAGTTGAAATTGTTGGAAGATGATCACATTGAGCAAATGATTGAGGAACTTCTTTATTATGGATCCATGGAGTTTTGTCTGTGA 564 46.63 MARPQKRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNAIQSSNSRILSANLTAKLHRCYMASLQISNQASGEFKRDIPAVFPASTPLPHAVVGAGVASSAVEESGPAAEQGPCAADWMVRSVKMESEFGELKLLEDDHIEQMIEELLYYGSMEFCL 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27879990 27880633 - CcPI632755_05g018840.1 Cco05g1884 179512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1884 187 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g1884 187 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 111 IPR050913 -
Cco05g1884 187 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Cco05g1884 187 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g1884 187 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g1884 187 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g1884 187 Pfam AP2 domain 7 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g1884 187 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677(InterPro)
Cco05g1884 187 CDD AP2 6 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g1884 187 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1884 Cco-Chr5:27879990 Cco08g1532 Cco-Chr8:26979231 1.10E-52 dispersed
Cco07g0525 Cco-Chr7:6727391 Cco05g1884 Cco-Chr5:27879990 2.20E-09 transposed
Cco07g1322 Cco-Chr7:27300801 Cco05g1884 Cco-Chr5:27879990 7.00E-38 transposed
Cco05g1884 Cco-Chr5:27879990 Cco08g1531 Cco-Chr8:26971959 1.40E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59326 PF00847 AP2 6.80E-12 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1884 - - - 0.0