Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1891 ATGGATCAAGGAATTCCCTCTTTCGTGGTCCCCAGTTCTCCTTCATCCATGTGTCCTCTTCTCATTCGCTTATCTCAAGCGTGCCTCCTTAGCGGTCCCCACAAGTGGTCCAAACGACCACAGCGCGACGCGTGTCGACCGCCGGTCACTTTATCTAACGTGAAAACCGGCAATTTCCTACTTCCCCAACCGGTGGCAGGTGGAACGGGTGCTGCAGTGAGAAGCCGGGGAGGGATCCACCGCCATGGCTACATAATCACTGACCCATTTCTCAAATACCTCGTTTCCTTCTCTCTCCCCTTTCCCATGGCGTATCACAATCACCTCTCACAAGATCTTCCTCTTCACTTCTCTGACCACCACCAAAATCAGCCTCTCTCTGATACTTCTCTCCGTACCATTTTGCCGGACCAACTTCCCGGCGCCCACTCCTCACCGGACCCCAAGTCTCACCAACCCCATCACCACCATCACCATCATCCGCTTCAGACGGCACCGAATTGGCTCAACAACGCACTTCTTCGCAACCAAAACCCCCATTCTCACTACTCTACCGACACCACCGCCACCGCCGCCGCCGCGGCCAATACTAATTTCCTTAACCTTCACACCACTGCATCCGATTCCACCGTTTCTCACTCCTCTAACCAATGGCTTTCCCGCCCGATCCTCCACCGTAACCACAGCGATGTCATCGACGATGTCGCCGCTGCCGCTGCCGGTGATTCTATGATCGGTGCTGCCACTGCTGCGCTCTCTCACGATTCTGGCGACATGAAGAACGATGCTAATAGCGGGGATGGATTGAACAAGAGCGAGGGTATGGTGATGGAAACTGGTGCCGGCGGTGAAGGGGTTTTGAATTGGCAACATGCTCGTTATAAAGCTGAGATTCTTGCTCATCCTCTTTACGAGCAGCTTCTTTCCGCTCATGTCGCTTGCCTTCGCATCGCAACGCCGGTCGATCAATTACCGAGGATCGATGCACAGCTCGCTCAGTCGCAGAATGTCGTCGCTAAGTACTCCGCCTTGGGCCACTCCGCTCCGCCGTCCATGGTTGGTGATGATAAAGAGCTTGATCAGTTCATGACGCATTATGTTCTTTTGCTTTGTTCATTCAAAGAACAACTTCAACAACATGTTCGAGTCCATGCAATGGAAGCAGTAATGGCTTGCTGGGACATTGAGCAGTCCCTACAAAGCTTAACAGGAGTTTCACCAGGTGAAGGTACAGGAGCAACAATGTCGGACGATGACGATGACCAAGTCGACAGCGATGCAAATCTGTTCGATGGAAGTTTAGAGGGTCCAGACACCATGGGGTTCGGCCCTCTTATTCCCACAGAGAGCGAGAGATCCTTGATGGAGAGGGTCAGGCAAGAACTGAAGCATGAATTAAAAGCGGGTTACAAGGAGAAAATTGTGGATATAAGGGAAGAAATTCTGAGAAAGAGAAGAGCTGGAAAACTCCCTGGTGACACCACCTCTGTCCTCAAACAATGGTGGCAATCACATTCTAAATGGCCTTATCCTACAGAGGAAGACAAGGCAAGGTTAGTGCAAGAAACTGGTCTACAACTGAAACAGATAAACAATTGGTTCATTAACCAAAGGAAGAGAAACTGGCACAGCAATCCTTCAAGTTCAACAAACTTGAAAAGCAAACGCAAAAGAAGTAATGCAGGTGAAAACAGCAGCGACCGTTTCAAATGA 1713 50.67 MDQGIPSFVVPSSPSSMCPLLIRLSQACLLSGPHKWSKRPQRDACRPPVTLSNVKTGNFLLPQPVAGGTGAAVRSRGGIHRHGYIITDPFLKYLVSFSLPFPMAYHNHLSQDLPLHFSDHHQNQPLSDTSLRTILPDQLPGAHSSPDPKSHQPHHHHHHHPLQTAPNWLNNALLRNQNPHSHYSTDTTATAAAAANTNFLNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDSMIGAATAALSHDSGDMKNDANSGDGLNKSEGMVMETGAGGEGVLNWQHARYKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHSAPPSMVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWDIEQSLQSLTGVSPGEGTGATMSDDDDDQVDSDANLFDGSLEGPDTMGFGPLIPTESERSLMERVRQELKHELKAGYKEKIVDIREEILRKRRAGKLPGDTTSVLKQWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTNLKSKRKRSNAGENSSDRFK 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27967000 27975308 + CcPI632755_05g018910.1 Cco05g1891 179519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1891 570 ProSiteProfiles 'Homeobox' domain profile. 481 544 IPR001356 GO:0003677(InterPro)
Cco05g1891 570 SMART KNOX2_2 349 404 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco05g1891 570 Pfam Homeobox KN domain 501 540 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco05g1891 570 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 244 552 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco05g1891 570 FunFam homeobox protein knotted-1-like 3 isoform X1 482 543 - -
Cco05g1891 570 Pfam ELK domain 461 482 IPR005539 GO:0003677(InterPro)
Cco05g1891 570 SUPERFAMILY Homeodomain-like 483 547 IPR009057 -
Cco05g1891 570 MobiDBLite consensus disorder prediction 556 570 - -
Cco05g1891 570 SMART ELK_2 461 482 IPR005539 GO:0003677(InterPro)
Cco05g1891 570 MobiDBLite consensus disorder prediction 538 570 - -
Cco05g1891 570 MobiDBLite consensus disorder prediction 403 422 - -
Cco05g1891 570 CDD homeodomain 484 545 IPR001356 GO:0003677(InterPro)
Cco05g1891 570 MobiDBLite consensus disorder prediction 135 164 - -
Cco05g1891 570 Pfam KNOX2 domain 353 403 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco05g1891 570 SMART KNOX1_2 292 336 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco05g1891 570 MobiDBLite consensus disorder prediction 538 555 - -
Cco05g1891 570 Gene3D - 482 543 - -
Cco05g1891 570 SMART HOX_1 483 548 IPR001356 GO:0003677(InterPro)
Cco05g1891 570 ProSiteProfiles ELK domain profile. 461 481 IPR005539 GO:0003677(InterPro)
Cco05g1891 570 Pfam KNOX1 domain 294 335 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1891 Cco-Chr5:27967000 Cco05g2007 Cco-Chr5:29168120 5.10E-29 dispersed
Cco01g0332 Cco-Chr1:3249957 Cco05g1891 Cco-Chr5:27967000 3.00E-105 transposed
Cco05g1891 Cco-Chr5:27967000 Cco08g1527 Cco-Chr8:26915636 5.80E-182 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59327 PF03791 KNOX2 2.50E-21 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1891 - - - 0.0