Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1895 ATGGGGAAGCCAACGGGAAAGAAGAAGGAAAATGTTGGGGAGAAGCCTGGAAATGCTAATTCTAAGACTGCTCGGCCGTCTGACCGAAACTCCAAGGCGTTCGATGAAGACACGGCCATCTTCATAAACATGTCCCAAGAGCTTAAGGAAGAAGGGAACCGGCTATTTCAGAAACGAGATCATGAAGGCGCCATGTTGAAATATGAGAAAGCTCTTAAGCTTTTGCCGAGAAATCATATTGATGTTGCTCATCTCCATAGCAACATGGCTGCTTGTTATATGCAGTTGGGATTGGGAGAGTATCCACGGGCGATTAACGAGTGCAATTTGGCTTTGGAGGCTCATCCAAGGTACAGCAAGGCGCTGCTGAAGAGAGCAAGGTGTTACGAGGCTTTGGGCCGGTTTGATTTGGCGTTGAGAGATGTGAATACTGTTTTGAGCTTGGAGGCTAATAACCTCTCTGCGTTGGAGATTTTGGATAGTGTCAAAAACACGATGAGAGAAAAGGGTGTTGATGTTGATGAGAAAGAAATCGGTTTGGGCATCGTAAAGCTACCTCCCGCAGCACATCTGCGAAAGGTAGTTAGAGAGAAACTAAGGAAGAAGAAGAATAAGAAAATTGAGGAAAAGACAGATGATAAGTTGATTGTAGAGGAGAAGGTTGATCAGGTGATTCAGGTTGATCAGGTTGAAGATAAGGAAGTTACAAAAAATACTATTGAGGAAGACAAATTGTTCGTTGAACCGATCGAGGAAAAGCCGGTCTCAAAGACAGTGAAGTTAGTATTTGGAGAAGACATAAGATGGGCGCAGTTACCTACAAATTGCACCATGAAATTGGTGAGCGAGATAGTTCGAGACAGATTTCCAAGCTTGAAGGGTGTTCTTGTGAAGTACAGAGATCAAGAGGGTGATTTGGTAACGATTACTACGACTGAGGAGCTGAGGTCGGTTGAATCATCTAGTCAGCTGCAGAGTTCACTTAGACTTTACATCACAGAGGTCAGTCCTGATCAGGAGCCTTCCTACAAGGAAATCAAAAACGAGGAGAAGCTTCCAGAGGTTGATAAAAGAAGAAATGCAGTGGTGGTGAATGGAGATTCAGAAAATGATAAAGAGGTTGTCATGGCTACGACTACGGTTGAGGACTGGATAGTCCAGTTTGCACGATTGTTCAAGAACCATGTTGGGGTTGATTCTGATTCATACTTGGATCTTCACGAGCTTGGAATGAAGCTGTACTCGGAAGCGATGGAGGACTCCATAACAGGAGACAGTGCACAGGAACTTTTTGAAATCGCTGCTGACAAGTTTCAAGAAATGGCAGCTCTGGCATTCTTCAACTGGGGCAATGTTCACATGTCCAGAGCAAGGAAGCAGGTTTTCTTTCCAGAAGACAGTTCGAGAGAAACTTTACTTCTTCAGATTAAGGATGCATATGAGTGGGCACGAAAAGAATACAAAAAGGCTGAAATGAGATACGAAGAAGCTTTAAATGTAAAACCTGACTTCTATGAAGGTTTCCTTGCACTTGGGCAGCAGCAGTTTGAGCAAGCCAAGCTTTGCTGGTATTATGCAATTGCTAGCGGAAGCAAAATCGATTTGGAATCGAGCTTCTCCACGGAGGTCTTACAACTTTATAACAAGGCTGAGGACAGCATGGAGAAGGGTATGCTGATGTGGGAAGAAATGGAGGAGCAGCGCCTGAATGGACTCTCCAAAAGTGAAAGATACAGATCTGAGTTGCAAAAAATGGGATTGGAAAGACTATTCAGTGAGATACCTGCTGATGAAGCTGCAGAGCTGGCTTCAAACATGAGATCACAGATATATCTTTTATGGGGAACCTTATTGTACGAGCGTTCTGTCGTGGAATATAAGATTGAACTACCAACCTGGGAGGAATGTTTGGAAGTATCGGTGGAAAAATTCGAACTTGCTGGTGCTTCCCAAACAGATATTGCAGTTATGATAAAGAATCATTGTTCCAATGAAACTGCACTGGAAGTTTGGTGTTCCATCTTTCCGCCTCGAGCCTTTGTTTCGGCGCCGGGCTCCAAAACTTCACTTCACTCTGGAGCATTTTTGAGAGTTTTGTTGTTGATGGAGGCATTCTTTAGAGGAAATTTAAAGCAATATTTCAGTCTTCTTTGCATCAAATTTTCTGGTGTTCTGCTTCCCACAAAGATAAAAGTTGTTCTGCACCAGCAGTTTTCGTTTCAATTCGTCGTTTACATGATCAGAGTGTTTGCTCAGATCGTCCTCAATCAACGGATGCCGATGATCTCTCTTCCTCTACGGCGGTCAATCGATATGCCTTATGGATTACGGTACTGTTCTTCTTCCTGGACATTGTTGGAAAACGCTCCTCCATCTTTGTAA 2382 43.58 MGKPTGKKKENVGEKPGNANSKTARPSDRNSKAFDEDTAIFINMSQELKEEGNRLFQKRDHEGAMLKYEKALKLLPRNHIDVAHLHSNMAACYMQLGLGEYPRAINECNLALEAHPRYSKALLKRARCYEALGRFDLALRDVNTVLSLEANNLSALEILDSVKNTMREKGVDVDEKEIGLGIVKLPPAAHLRKVVREKLRKKKNKKIEEKTDDKLIVEEKVDQVIQVDQVEDKEVTKNTIEEDKLFVEPIEEKPVSKTVKLVFGEDIRWAQLPTNCTMKLVSEIVRDRFPSLKGVLVKYRDQEGDLVTITTTEELRSVESSSQLQSSLRLYITEVSPDQEPSYKEIKNEEKLPEVDKRRNAVVVNGDSENDKEVVMATTTVEDWIVQFARLFKNHVGVDSDSYLDLHELGMKLYSEAMEDSITGDSAQELFEIAADKFQEMAALAFFNWGNVHMSRARKQVFFPEDSSRETLLLQIKDAYEWARKEYKKAEMRYEEALNVKPDFYEGFLALGQQQFEQAKLCWYYAIASGSKIDLESSFSTEVLQLYNKAEDSMEKGMLMWEEMEEQRLNGLSKSERYRSELQKMGLERLFSEIPADEAAELASNMRSQIYLLWGTLLYERSVVEYKIELPTWEECLEVSVEKFELAGASQTDIAVMIKNHCSNETALEVWCSIFPPRAFVSAPGSKTSLHSGAFLRVLLLMEAFFRGNLKQYFSLLCIKFSGVLLPTKIKVVLHQQFSFQFVVYMIRVFAQIVLNQRMPMISLPLRRSIDMPYGLRYCSSSWTLLENAPPSL 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28023903 28028178 - CcPI632755_05g018950.1 Cco05g1895 179523

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1895 793 SMART PB1_new 256 335 IPR000270 GO:0005515(InterPro)
Cco05g1895 793 ProSiteProfiles PB1 domain profile. 256 335 IPR053793 -
Cco05g1895 793 SUPERFAMILY TPR-like 34 162 IPR011990 GO:0005515(InterPro)
Cco05g1895 793 PANTHER PROTEIN CLMP1 1 669 IPR044517 -
Cco05g1895 793 MobiDBLite consensus disorder prediction 1 33 - -
Cco05g1895 793 ProSiteProfiles TPR repeat profile. 45 78 IPR019734 GO:0005515(InterPro)
Cco05g1895 793 SMART tpr_5 471 504 IPR019734 GO:0005515(InterPro)
Cco05g1895 793 SMART tpr_5 45 78 IPR019734 GO:0005515(InterPro)
Cco05g1895 793 SMART tpr_5 83 118 IPR019734 GO:0005515(InterPro)
Cco05g1895 793 SMART tpr_5 119 152 IPR019734 GO:0005515(InterPro)
Cco05g1895 793 SUPERFAMILY CAD & PB1 domains 245 347 - -
Cco05g1895 793 Coils Coil 480 500 - -
Cco05g1895 793 ProSiteProfiles TPR repeat profile. 119 152 IPR019734 GO:0005515(InterPro)
Cco05g1895 793 MobiDBLite consensus disorder prediction 1 15 - -
Cco05g1895 793 Pfam PB1 domain 258 333 IPR000270 GO:0005515(InterPro)
Cco05g1895 793 Gene3D Tetratricopeptide repeat domain 41 178 IPR011990 GO:0005515(InterPro)
Cco05g1895 793 Gene3D - 256 336 - -
Cco05g1895 793 CDD PB1 258 315 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1895 K26538 - - csv:101217917 1199.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1048 Cco-Chr1:13633457 Cco05g1895 Cco-Chr5:28023903 3.10E-130 transposed
Cco05g1895 Cco-Chr5:28023903 Cco06g1371 Cco-Chr6:24180283 8.20E-203 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g554 . . . . . . . . . . Cma01g01489 . . . . . . . . . . . . . Cla05g01710 Cam05g1825 Cec05g1837 Cco05g1895 Clacu05g1810 Cmu05g1696 Cre05g1825 . . . . Lsi04g02102 . . . . . . Bda13g01251 . . . . Sed13g1998 Cmo01g01543 . . . . . . . Bhi09g02959 Tan01g3607 Cmetu07g2079 . Hepe01g1993 . . . . . . . . . . . . Cme07g00090
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006619 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 2 37