Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1908 ATGGATATCAGCTGGCCATGGCCTACTCCCACAACAACAACAACATCATCTTCCCCTACTTTACCTCTCATGAAGAATGTTTGTTGGCCCTACTTTGATCCTGATTTTGATACTCTCCCTGAGAGGATAAATGGCCCAACTTGCAGGGTCTGTATTGACAATGAAAGCATGGAGGATTGCACCATTGTCAAGGCCATTGGAACGACCAAAGGACCTGATAGCTCTGCCAAAACCATAAGCTATGCTAACAAACTTCTGAAATCTGATAACTCCGGCGAGCATACGGCCATTGAAATGACCGGCACCGACCGGCCCGGTCTCTTCTCCGAGATATCTGCTGCATTGGCTGATCTACATTGCAACGTTGTGGAAGCTCATGCTTGGAGCCATAATGCTCGTCTGGCCTGCATTGCTTATATTTCGGACCAATCTACCGACAGTCCTATTGAGGATCCCCACCGGCTCGCTACGATTGAGGAGCATCTCTCCACCGTCCTCAGGGCGGCGACCGCCCCTCCGATCACCAGTTGGACACATACCCTGCAACAAGAAGTAAAGATATCAGCCACCGTAACAACCAATGTGGAGCGGCGGCTACACCAAATGTTGCTCTCGGTTAAGGATTATGATTGGACGTCTGAATCCATTTCAAAGAGACCCAAAAGCAATGAAGAGTGGAGGAAGACAATGGTGGGGATTGAAAGCTGTGATCAGAAAGGATACTCCATTGTGAGCATTGAGTGCAAGGATCGGCCAAGGCTTATGTTTGACACAGTTTGTACTCTTACTGATATGCAATATGTAATCTTCCATGCTTCCATTAGCTCCAAGGGAGGTTGTGCTTTTCAGGAATATTTTATCAGACATGTGAATGGGTACGCCTTGAATTCAGAGAATGACAAGCACAAGGTGGTAAAATGCTTAGAGGCAGCCATCGAGCGTCGTGTTTGCGAGGGAGTGAGGCTGGAGTTATGTGCAAACAACAGGGTGGGATTGCTATCAGACATAACAAGGGTTCTGCGGGAAAATGGGCTGAATGTGGTGAGAGCAGACATAGCAACACAAGGAGAGAAGGCCATTAATGCATTTTATGTCAAAGACATTTCAGGCAAAGAAGTAGACATGGAGATGGTGGAGTCAGTGAAGAAGGAAATTGGCCCCGTTGTCCTTCGAGTCAAGAACGAGACAAGCCCTCCATCGACACCTCAAATTACCAGGTCTCGTTTCTCCTTCAGCGACATGCTCAAGTCTCAGCTCGAGCGCCTCTCACACAACTTCATTGCCATCAGGCACTGA 1296 47.92 MDISWPWPTPTTTTTSSSPTLPLMKNVCWPYFDPDFDTLPERINGPTCRVCIDNESMEDCTIVKAIGTTKGPDSSAKTISYANKLLKSDNSGEHTAIEMTGTDRPGLFSEISAALADLHCNVVEAHAWSHNARLACIAYISDQSTDSPIEDPHRLATIEEHLSTVLRAATAPPITSWTHTLQQEVKISATVTTNVERRLHQMLLSVKDYDWTSESISKRPKSNEEWRKTMVGIESCDQKGYSIVSIECKDRPRLMFDTVCTLTDMQYVIFHASISSKGGCAFQEYFIRHVNGYALNSENDKHKVVKCLEAAIERRVCEGVRLELCANNRVGLLSDITRVLRENGLNVVRADIATQGEKAINAFYVKDISGKEVDMEMVESVKKEIGPVVLRVKNETSPPSTPQITRSRFSFSDMLKSQLERLSHNFIAIRH 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28189290 28191780 - CcPI632755_05g019080.1 Cco05g1908 179536

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1908 431 SUPERFAMILY ACT-like 319 388 IPR045865 -
Cco05g1908 431 ProSiteProfiles ACT domain profile. 96 176 IPR002912 -
Cco05g1908 431 CDD ACT_ACR_2 95 168 - -
Cco05g1908 431 Pfam ACT domain 321 369 IPR002912 -
Cco05g1908 431 SUPERFAMILY ACT-like 92 165 IPR045865 -
Cco05g1908 431 CDD ACT_ACR_3 241 315 - -
Cco05g1908 431 CDD ACT_ACR_4 319 390 - -
Cco05g1908 431 Gene3D - 92 170 - -
Cco05g1908 431 ProSiteProfiles ACT domain profile. 321 399 IPR002912 -
Cco05g1908 431 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 77 395 IPR040217 -
Cco05g1908 431 Pfam ACT domain 97 141 - -
Cco05g1908 431 Gene3D - 320 395 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1908 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1908 Cco-Chr5:28189290 Cco06g0193 Cco-Chr6:2020881 2.40E-87 dispersed
Cco05g1908 Cco-Chr5:28189290 Cco10g0329 Cco-Chr10:3842526 5.30E-71 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g502 . Blo12g01071 . Bda03g00076 . . Bma04g00073 . . . Cma01g01514 . . . . . . . . . . . . . Cla05g01724 Cam05g1837 Cec05g1851 Cco05g1908 Clacu05g1824 Cmu05g1708 Cre05g1839 Cone4ag1777 . . . Lsi04g02116 Csa03g04320 Chy04g00380 . . . . . . Bpe04g00062 . . Sed13g2012 Cmo01g01567 . . . . . . Cpe02g00442 Bhi09g02223 Tan01g3625 Cmetu04g2629 . Hepe01g2008 Mch11g0544 . . . . . . . . . . . Cme04g00426
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011487 0 2 0 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31