Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1909 ATGAGTATATCTGAGGCAGTATCTTCATCATCCACCACGGGGTTATCGGAGCAGTCGCAATCGTCGTCGTCGTCGTCGTCATCGTCGACGACGCCGTTGGAGAAGCCTCAATCGATATCGGCTGCAGCGGCGGCGGAGGATTTGGCCGTCGGGTCAAGGGATGGCGGCGGGGCGCAGGAAACGGTGACTGTCGATCGACGAGGGGACTTCTCCGCGGTGTGTAGATGGACAGTACAAAATTTTCCAAGAATCAAGGCTAGGGCTCTATGGAGCAAATATTTTGAGGTTGGAGGTTACGATTGCCGTCTGTTGATATATCCAAAGGGGGATTCTCAAGCACTGCCAGGGTATATTTCAATTTACCTTCAAATCGTGGACCCGCGCGGCACATCATCTTCCAAATGGGATTGCTTCGCTAGCTACCGTCTGGCCATCGTCAACGTTCTCGATGATTCCAAGACCGTTCATCGGGATTCATGGCACCGTTTCTCGAGCAAGAAGAAGTCACATGGATGGTGCGATTTTACTCCCTCTTCCACCGTGTTTGATTCTAAGCTCGGTTATTTGTTTAATAATGAGTCTATTTTGATCACTGCTGATATTCTAATCCTCAATGAGTCTGTAAACTTTACCCGGGATAACAATGAGCCAGCCTCATCTATGATGATGGCATCCTCGGTTGTTGCTTGCCCTGCGCCCGAGGTGCTCAGCGGCAAGTTCACCTGGAAAGTTCATAATTTTAGTTTGTTTAAAGAGATGATAAAAACACAGAAAATAATGAGTCCCGTGTTCCCAGCTGGAGAGTGTAATTTGAGGATTAGTGTCTATCAGAGCTCAGTTAATGGGGCTGAGTATTTATCAATGTGTCTAGAGAGCAAGGATACCGAAAAGACAGTAATATTACCTGACAGGAGTTGTTGGTGTTTGTTTCGGATGTCCGTGTTAAACCAGAAGCCTGCTTTGAATCACATGCATCGAGACTCATATGGGAGATTTGCAGCTGATAATAAGAGTGGGGACAACACCAGTTTGGGGTGGAATGACTATATGAAGATGTCTGATTTTGTTGGGCAAGATTCTGGTTTTTTAGTTGACGATACCGCTGTGTTTAGTACTTCCTTTCATGTGATCAAGGAGTTTAGTAATTTTTCAAAGAATGGTGGATTAATTGGAGGTAGAAATGGAAGTGGAATTAGAAAATCAGATGGTCACATGGGGAAATTTACGTGGAGGATTGAGAACTTCACAAGGTTAAAGGACCTCTTGAAGAAGAGGAAGATTACAGGTCTTTGCATCAAGAGCAGGAGATTTCAGGTTGGGAACCGCGACTGTCGTCTCATTGTTTATCCTCGAGGGCAGTCTCAACCACCATGTCACCTTTCAGTCTTTCTTGAAGTTACGGATTCAAGAAATACTTCCAGTGATTGGAGTTGTTTTGTGAGTCATCGGTTGTCAGTAGTAAACCAGAAGATGGAAGAGAAATCTGTTACAAAGGAGTCTCAAAACCGGTACTCTAAAGCTGCAAAAGACTGGGGATGGCGTGAATTTGTCACACTTACCAGCCTCTTTGATCAGGATTCCGGGTTTCTTGTTCAGGATACTGTAATATTCTCAGCGGAGGTCCTTATATTAAAGGAGACATCTGTGATGCAGGATTTTATTGATCAAGACATGGAGCCAACTGGTTCCAGCTCTCTGACGGATAAGGTAGCAAAAAAAAGTTCGTTTACATGGAAGGTGGAGAACTTTTTGTCCTTCAAGGAAATAATGGAGACTCGTAAAATTTTTAGTAAATTCTTTCAAGCTGGTGGATGTGAGCTCCGTATTGGTGTCTATGAGTCCTTTGACACTATTTGCATCTATCTGGAGAGTGATCAGTCTGTTGGCAGTGATCCAGATAAAAACTTTTGGGTCAGATACAAAATGGCCGTGGTGAATCAAAAATACCCTGCCAAAACTGTGTGGAAGGAGTCTTCTATCTGTACAAAGACATGGAATAATTCTGTTTTGCAATTCATGAAGGTTTCAGATATGCTAGAGGCAGAAGCGGGGTTTCTTGTACGAGATACAGTTGTTTTCGTATGTGAAATATTGGATTGCTGCCCTTGGTTTGAGTTTTCAGATCTTGAGGTTTTGGCTTCAGAAGATGATCAGGATGCGTTGACTACTGATCCAGACGAACTCATTGATTCAGAAGATAGTGAAGGAATAAGTGGTGATGAAGAAGACATTTTTAGAAACCTTCTATCTACAGCTGGATTTCATCTAACATACGGGGATAATCCTTCACAACCACAAGTCACTTTGCGAGAAAAACTATTAATGGATGCTGGTGCAATTGCAGGCTTTCTTACTGGACTTCGTGTTTATCTTGATGATCCTGCTAAAGTTAAGCGCTTACTTCTTCCTACTAAGCTATCCAGTAGCAATGATGGGAAGAAGGTCTCAAAGACAGATGAGTCTTCCCCCAGTTTAATGAATTTGCTGATGGGAGTCAAAGTATTACAGCAGGCAATTATTGATTTACTGTTGGATATAATGGTCGAGTGTTGTCAACCTTCAGAAGGTGGCTCTGGAGATCATTTGGAAGCAAATTCAAAGCCTTCTGTTTCTAGCAGTGGAGACACTACCGCACCACTGGAAGGTGAAACTGAAAATGCAGCAACAGAGGCTGCAGATTCTCCTCCATTTCAGAGATTGGATTCCATTGAGGAAAGTAGTAGTGCTCCTGCTGTACAAAGCTCTGACATGATTAGAACTGACAGGCAGGGTAAGTCTCTACCTGAAGAGTTAATACATCCACCTGAAACATCTGCTGGGGTTTCAGAGAATGTCTTCCTTCGTACAAAGACCAAGTGGCCTGAGCAATCTGAGGAGCTTTTAGGCTTGATTGTAAATTCATTGAGAGCCCTAGATGGGGCTGTCCCTCGAGGATGTCCTGAGCCAAGAAGACGGCCTCAGTCTGCACAAAAGATTGCTCTTGTGCTGGATAAAGCTCCCAGACATCTACACTCTGACCTGGTTGCATTAGTACCTAAATTGGTTGAGCATTCAGAACATCCACTGGCTGCTGGTGTGCTTCTAGAAAGGCTTCATCAGCCTGGTGCTGAGCCAGCACTGCGGGTACCTGTTTTTGGTGCTCTTAGTCAGCTGGAGTGTGGCACCGAAGTTTGGGAACAAGTTCTGTTTAAATCTATTGAGTTTTTAGCAGATTCAAATGATGAGCCTCTTGCTGCAACTATAGATTTTCTTTTCAAAGCTGGAGCTCAGTGCCAACATCTCTCTGAAGCGGTGAGATCTGTACGTGGTAGGCTGAAGAATTTGGGCATGGAGGTTTCCCCATGTGTTCTTGATTTATTAAGTAAAACTGTAAATAGCTGGGGTGATGTTTCTGATATTATACTCAGAGATATTGATTGTGATGATGATGCTGATGATTTCTGCTCAAAAATATCACGTGAGCTTTTCCTATTTGGTGAACCTGGCCCGACTTCAGAAAGTTTGCATCCATTGGATGAACAGGATTTACATGCTGCTCGTCATTTTTCTGATATTTATATCTTGATTGAGATGTTATCGATACCTTGTCTTGCCGTTGAAGCGTCACAGACATTTGAGAGAGCTGTAGCTCGCGGTGCCATCACGGCTAAATTTGTTGCTGTGGTGTTGGAAAAACGTCTTGCTCAAAAAGCAAACAGCAACACTAGATTCGTAGCTGAAAGCTTCCAGCCTGGAGATTCTGTAATAGATGGAGAAACTAGTGAGCAACTGAGAGTCCAGCGGGATGATTTTACGTCTATTGTTGGTCTTGCTGAAACATTAGCACTCTCTAGAGACCCTTGTGTTAGAGGATTTGTGAAAATGCTGTATCCATTATTGTTTAAGTGGTATGCAAGTGAGTCGTATCGGGCCAGGATGCTAAAAAGATTAGTTGACCGTGTAACCAGCAGTGCAGACAATAACCGTGAAGTAGATATGGATTTGGAGATTCTGGTTATGTTGATTGGTGATGAACAAGAAATAATCAGACCTGTGCTAAATATGATGCGAGATGTTGCAGAACTAGCAAATGTTGACCGTGCTGCTCTCTGGCACCAGTTATGTGCTACTGAAGATGAAATCATCCGTATCCGTGAAGAAAGCAAAGTAGAAATTTCAAATATGATGAAAGAAAAAACTGTTCTGTCACAAAAATTGAGTGAATCTGATGCTATGAACAATCGCCTTAAGAATGAGATGAAGGCTGAGATGGAGCGATTTTCTCGCGAGAAAAAGGAACTTTCTGAACAAATACATGACATTGAGAGTCAGCTTGAGTGGCTTCGCTCTGAGCGAGATGATGAGATTGTGAAGTTAACAGCAGAGAAGAAAGTTCTCCATGATCGTCTCCATGATGCTGAGACTCAAATTGCACAATTGAAATCCCGAAAACGTGATGAGATGAAGAAAGTAGTGAAGGAAAAAAATGCACTTGCTGAGAGATTGAAGAGTGCTGAAGCTGCTCGAAAAAGATTTGATGAACAACTGAAACGGTATGCAAATGAGAATATGACAAGGGAAGAAATCCGACAGTCGCTAGAAGATGAAGTTCGCAGGCTTACACAAACAGTTGGACAGACTGAAGGAGAAAAGAGGGAGAAGGAGGAGCAGATTGCTCGATGTGAAGCATATATTGATGGGATGGAAGCTAAATTGCAGGCCTGCCAGCAATATATCCATTCACTTGAAGCATCACTACAAGAGGAAATGTCAAGACATGCCCCTCTGTATGGCGCTGGTTTGGAAGCTCTGTCAATGAAGGAGCTAGAGACATTATCCCGAATTCATGAAGAAGGATTAAGGCAAATTCATACTCTTCAGCAGCGCAAAGGGAGTCCAGCTGGCAGTCCTCTTGTGAGCCCCCATTCCCTCTCTCACAGTCATGGGTTGTACACTTCTGCACCGCCGCCAATGGCAGTCGGGATGCCTCCTTCACTCATTCCCAATGGCTCAGGGATCCACAGCAATGGGCATGTGAATGGTGGTGCAGTTGGACCATGGTTCAACCATGCTTGA 5055 43.68 MSISEAVSSSSTTGLSEQSQSSSSSSSSSTTPLEKPQSISAAAAAEDLAVGSRDGGGAQETVTVDRRGDFSAVCRWTVQNFPRIKARALWSKYFEVGGYDCRLLIYPKGDSQALPGYISIYLQIVDPRGTSSSKWDCFASYRLAIVNVLDDSKTVHRDSWHRFSSKKKSHGWCDFTPSSTVFDSKLGYLFNNESILITADILILNESVNFTRDNNEPASSMMMASSVVACPAPEVLSGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVNGAEYLSMCLESKDTEKTVILPDRSCWCLFRMSVLNQKPALNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMSDFVGQDSGFLVDDTAVFSTSFHVIKEFSNFSKNGGLIGGRNGSGIRKSDGHMGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQVGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRNTSSDWSCFVSHRLSVVNQKMEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVIFSAEVLILKETSVMQDFIDQDMEPTGSSSLTDKVAKKSSFTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQSVGSDPDKNFWVRYKMAVVNQKYPAKTVWKESSICTKTWNNSVLQFMKVSDMLEAEAGFLVRDTVVFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDELIDSEDSEGISGDEEDIFRNLLSTAGFHLTYGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKVKRLLLPTKLSSSNDGKKVSKTDESSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPSEGGSGDHLEANSKPSVSSSGDTTAPLEGETENAATEAADSPPFQRLDSIEESSSAPAVQSSDMIRTDRQGKSLPEELIHPPETSAGVSENVFLRTKTKWPEQSEELLGLIVNSLRALDGAVPRGCPEPRRRPQSAQKIALVLDKAPRHLHSDLVALVPKLVEHSEHPLAAGVLLERLHQPGAEPALRVPVFGALSQLECGTEVWEQVLFKSIEFLADSNDEPLAATIDFLFKAGAQCQHLSEAVRSVRGRLKNLGMEVSPCVLDLLSKTVNSWGDVSDIILRDIDCDDDADDFCSKISRELFLFGEPGPTSESLHPLDEQDLHAARHFSDIYILIEMLSIPCLAVEASQTFERAVARGAITAKFVAVVLEKRLAQKANSNTRFVAESFQPGDSVIDGETSEQLRVQRDDFTSIVGLAETLALSRDPCVRGFVKMLYPLLFKWYASESYRARMLKRLVDRVTSSADNNREVDMDLEILVMLIGDEQEIIRPVLNMMRDVAELANVDRAALWHQLCATEDEIIRIREESKVEISNMMKEKTVLSQKLSESDAMNNRLKNEMKAEMERFSREKKELSEQIHDIESQLEWLRSERDDEIVKLTAEKKVLHDRLHDAETQIAQLKSRKRDEMKKVVKEKNALAERLKSAEAARKRFDEQLKRYANENMTREEIRQSLEDEVRRLTQTVGQTEGEKREKEEQIARCEAYIDGMEAKLQACQQYIHSLEASLQEEMSRHAPLYGAGLEALSMKELETLSRIHEEGLRQIHTLQQRKGSPAGSPLVSPHSLSHSHGLYTSAPPPMAVGMPPSLIPNGSGIHSNGHVNGGAVGPWFNHA 1684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28194107 28207074 - CcPI632755_05g019090.1 Cco05g1909 179537

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1909 1684 Gene3D - 1441 1634 - -
Cco05g1909 1684 Coils Coil 1399 1444 - -
Cco05g1909 1684 Coils Coil 1449 1564 - -
Cco05g1909 1684 PANTHER TRAF-LIKE FAMILY PROTEIN 20 1683 - -
Cco05g1909 1684 SUPERFAMILY TRAF domain-like 406 547 - -
Cco05g1909 1684 SUPERFAMILY TRAF domain-like 235 381 - -
Cco05g1909 1684 CDD MATH 575 697 IPR002083 GO:0005515(InterPro)
Cco05g1909 1684 CDD MATH 75 201 IPR002083 GO:0005515(InterPro)
Cco05g1909 1684 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 403 562 IPR008974 GO:0005515(InterPro)
Cco05g1909 1684 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 70 216 IPR008974 GO:0005515(InterPro)
Cco05g1909 1684 ProSiteProfiles MATH/TRAF domain profile. 71 201 IPR002083 GO:0005515(InterPro)
Cco05g1909 1684 CDD MATH 238 370 IPR002083 GO:0005515(InterPro)
Cco05g1909 1684 SUPERFAMILY TRAF domain-like 573 698 - -
Cco05g1909 1684 MobiDBLite consensus disorder prediction 1 40 - -
Cco05g1909 1684 SMART math_3 242 355 IPR002083 GO:0005515(InterPro)
Cco05g1909 1684 SMART math_3 578 678 IPR002083 GO:0005515(InterPro)
Cco05g1909 1684 SMART math_3 410 522 IPR002083 GO:0005515(InterPro)
Cco05g1909 1684 SMART math_3 73 181 IPR002083 GO:0005515(InterPro)
Cco05g1909 1684 MobiDBLite consensus disorder prediction 864 883 - -
Cco05g1909 1684 MobiDBLite consensus disorder prediction 900 921 - -
Cco05g1909 1684 ProSiteProfiles MATH/TRAF domain profile. 237 374 IPR002083 GO:0005515(InterPro)
Cco05g1909 1684 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 563 699 IPR008974 GO:0005515(InterPro)
Cco05g1909 1684 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 233 381 IPR008974 GO:0005515(InterPro)
Cco05g1909 1684 MobiDBLite consensus disorder prediction 1619 1649 - -
Cco05g1909 1684 MobiDBLite consensus disorder prediction 1 37 - -
Cco05g1909 1684 Pfam MATH domain 239 371 IPR002083 GO:0005515(InterPro)
Cco05g1909 1684 Pfam MATH domain 75 195 IPR002083 GO:0005515(InterPro)
Cco05g1909 1684 Pfam MATH domain 407 541 IPR002083 GO:0005515(InterPro)
Cco05g1909 1684 Pfam MATH domain 575 697 IPR002083 GO:0005515(InterPro)
Cco05g1909 1684 MobiDBLite consensus disorder prediction 1619 1643 - -
Cco05g1909 1684 ProSiteProfiles MATH/TRAF domain profile. 573 697 IPR002083 GO:0005515(InterPro)
Cco05g1909 1684 MobiDBLite consensus disorder prediction 855 938 - -
Cco05g1909 1684 CDD MATH 406 541 IPR002083 GO:0005515(InterPro)
Cco05g1909 1684 ProSiteProfiles MATH/TRAF domain profile. 405 541 IPR002083 GO:0005515(InterPro)
Cco05g1909 1684 SUPERFAMILY TRAF domain-like 72 209 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1909 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1909 Cco-Chr5:28194107 Cco10g1775 Cco-Chr10:31343063 7.50E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g501 . . . Bda03g00075 . . Bma04g00072 . . . Cma01g01513 . Car09g00391 . . . Cpe06g00327 . . . . . . . Cla05g01725 Cam05g1838 Cec05g1852 Cco05g1909 Clacu05g1825 Cmu05g1709 Cre05g1840 . . Cone17ag1011 . Lsi04g02117 Csa03g04321 Chy04g00379 . . . . . . Bpe04g00061 . . Sed05g1711 Cmo01g01566 Cmo09g00453 Cma09g00443 . . . . Cpe02g00443 Bhi09g02224 Tan01g3626 Cmetu04g2170 . Hepe01g2009 Mch11g0545 . . . . . . . . . . . Cme04g00422
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007058 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 2 37