Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1915 ATGGCGGACGACGATTACAATGACCTCGACATGGGATATGAAGATGAGCCACCAGAACCCGAGATTGAGGAAGGTGCTGAGGAAGAATTAGATACTACTAACAATGATGATGTTGCTGGTGAACCCGTTGAAGCTGAGGAAAAGGAAGATGAAGAACCTGTTGAACGAGTGCGTAAAACGTCAAAATTTATGACTAAGTATGAACGGGCTAGAATTTTGGGTACACGTGCCCTCCAAATCAGCATGAATGCTCCTGTGATGGTCGAGTTGGAGGGTGAGACTGATCCACTTGAGATTGCAATGAAGGAACTTCGTGAGCGGAAGATACCCTTCACCATCCGTCGCTACCTGCCAGATGGAAGTTATGAAGATTGGGGCGTTGATGAACTGATTGTGGAGGATTCTTGGAAGAGGCAAGTTGGTGGCGCTTGA 432 46.99 MADDDYNDLDMGYEDEPPEPEIEEGAEEELDTTNNDDVAGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA 143
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28271334 28274383 + CcPI632755_05g019150.1 Cco05g1915 179543

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1915 143 Pfam RNA polymerase Rpb6 60 111 IPR006110 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cco05g1915 143 SMART RNA_pol_Rpb6_2 58 111 IPR006110 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cco05g1915 143 PIRSF RpoK/RPB6 1 134 IPR006111 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cco05g1915 143 ProSitePatterns RNA polymerases K / 14 to 18 Kd subunits signature. 65 79 IPR020708 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cco05g1915 143 Hamap DNA-directed RNA polymerase subunit Rpo6 [rpo6]. 62 117 IPR006111 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cco05g1915 143 SUPERFAMILY RPB6/omega subunit-like 1 133 IPR036161 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cco05g1915 143 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT K 1 137 - GO:0001054(PANTHER)|GO:0001055(PANTHER)|GO:0001056(PANTHER)|GO:0005665(PANTHER)|GO:0005666(PANTHER)|GO:0005736(PANTHER)|GO:0006360(PANTHER)|GO:0006366(PANTHER)|GO:0042797(PANTHER)
Cco05g1915 143 MobiDBLite consensus disorder prediction 1 50 - -
Cco05g1915 143 PIRSF RPB6 1 134 IPR028363 GO:0003899(InterPro)|GO:0005634(InterPro)|GO:0005665(InterPro)|GO:0006351(InterPro)
Cco05g1915 143 FunFam DNA-directed RNA polymerases I, II, and III subunit RPABC2 2 134 - -
Cco05g1915 143 Gene3D - 3 134 IPR036161 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cco05g1915 143 MobiDBLite consensus disorder prediction 1 56 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1915 K03014 - - csv:101209100 233.802
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0947 Cco-Chr5:8297274 Cco05g1915 Cco-Chr5:28271334 1.10E-73 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g498 . . . . . . . . . . Cma01g01508 . Car09g00394 . . . Cpe06g00330 . . . . . . . Cla05g01730 Cam05g1843 Cec05g1855 Cco05g1915 Clacu05g1831 Cmu05g1714 Cre05g1845 . Cone7ag1693 Cone17ag1014 Cone20ag0354 Lsi04g02120 Csa03g04325 Chy04g00375 . Blo17g00016 . . Bda13g01255 Bpe14g00585 . . Bma02g00020 Sed05g1708 Cmo01g01563 Cmo09g00456 Cma09g00449 . . . . Cpe02g00446 Bhi09g02227 Tan01g3629 Cmetu04g2606 . Hepe01g2012 Mch11g0548 . . . . . . . . . . . Cme04g00418
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003726 1 2 1 1 1 1 2 2 1 1 1 2 2 1 2 2 2 2 2 2 2 1 2 1 1 1 1 2 2 1 45