Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1916 ATGGCGTCTCCGGCGGCTACTCATCTCAACGTCTACCCCTCGTCCTCTCTCTGCCGTTCCAAGAGGTCATCTCTGAGGCTCAGTAGGAATCAGACAATATTTACTTCTAGCACAACTTGGGAGAGAAGATCTCATTCCCTGAAGGTTGTCCGGTCGGTCCTGAATAACTGCAAGTCAAATTTAAATGATAATGGAGCAAGTGAAGAAGCAAAACTGCTTCTGGAGAGATTGTATGCCCAGACACAGAGATTGGAAGAACATGTAAGCAAAGATCCTCACTTCCCACAAGATCTTTGGATAGGGCTCAGTCTTGAAAATCTCGAGTCCGATCTCCAGGCTGCATTGGCAGTATTAAAAAAGAAGGAAGAAGATCTACAAGATGCAGAAAGAACGATTTTATTAGAAAGAAGCCAATTAAACAATGCGAGGGAGAAGTTGGAGAAGCAGGAGGAAGAAATTACTGCTGCTTATCGTAAACAGCAAGAATTAGAAGATGAGCTTAAGCAGGCAAATCTAAACTTAGCTTCTCAAGCTAGACATATTGATGAATTAAAACTTCAAATTAGGGAAAAAGACGAGGGGATTGCTGCAGTTGAATCTGCCCTTACTTTGAAAGAAGACGAGTTGAAGAGAATGAGAGCTGATTTGGCTAAGAAGAGTGAGGAAGCTGTTAAGACAGATTTTGAACTTAAATCTAAGTCCCAGCTTCTGACTGAAGCCAACGCAGTAGTGAAAAGACAAGAAGTTGAGCTACAAATGCTTAAAAAGGCTGTGCTAGAGAAAGAAAAAGAATTGGAACTTTCTGCAAAGCTGCAGAAACTTGAAGAGGAGAAACTGGAAGTTATAGAGAAAAATTTGGAGAAGAGGACAATGGAATGGTTGTTAGCACAGGAAGAATTGAAAAAAATGAGAAAGGAGGCATCTAAGAAAGCAGTAGAGATGAATAAAACTGTGAATGACTTCAACCGAGTGAAGAAGCTTCTTGCCGATGTAAAGACTGAGTTGGTTTCGTCACAAAAGTCTCTTGTGTCCTCCAAAAGGAAAATAGAAGAACAAGAAGATATTCTTGAGAGGCAAATGGCAGAACTTGAAGAACAAAAGAAGGGTATCAATTCATATATGTCAAGTTTAAAAGATGCTCAAATTGAAGTAGAGAGTGAGAGAGTGAAGCTTAGAGTCGCCGAGGCCCATAACAAGGAGCTTGAACGTGACTTGTTGATGGAAAAGGAGCTAACTGATGAGTTACAGCAACAACTGAAGAAAGAGAAATCCTATCTCCAACAGGCAACTGAGGAGAAGTCATTTCTACAGAAGGAGCTAGAGCATAAAAATATTGGGTTCAAGAAAACTCACGATCTTCTTCAAGATAAAGCATCGGAGTTGGTTGAGGCCAAGTTAGAAATTCAACATTTGAAATCCGAACAGGTTTCTCTTCAACTTCTTTTGAAGGAGAAAGACTTGGAAATACTTGATGCACAAAAGAAAATTGAGGAATTAAACCAGGAAATTATTGAGCTACAAACGCTTATGAGCAGTAAAGAGGCCCAGCTCAGTCAGACAACTGCTATGCTGAAAGAGAAGGATGAATGCGTTCAGATAATGCAAAACGAACTAAAGAATACAAAGCTGAAAATTTCCGAAGCTGAAGCAGCAGTAGAACACATTGTGGATCTCACAAATAAATTGGTAATCTCCATCAAAGATGGCGACGACGACGTTTTGAAATTGAACGATGACCTTAGCCTCAATCTACAGCAGCAGTTATTCAAGAAACCTACTGATAATATAAGGCTACAGAAGAAACAGCTCGAAACCGAGCTAGAGCTCACCAAGGAAAGCTTGAGACAAAAAGAAATGGAAATTCTAGCTGCAGAAAGAGCCTTGACCGTTAAAGACGAGGAACTAAAAACGGTTCTGGAAAGATTAGGTACAAAGGAGAAAGAATTCGAGAAGATGAAGGAAGAGATGGATGAAGAAGCTAAGGATCTGAGGAAGCTATACGCTTTGGCAGAAGATAATGTTGGAGTAGAGGACTTGGCTATTGAAAGGCTTCAAGTTGAAGCTGCTAAGTTAGAGGTCGAAGCAGCTACCAGCGCGCTTCAGAAACTCACGGACATGAGTCGAGAGCTTCTAAATAAAGCTGGCAACAGCCTTGAGGTTCATAACGATTCAAGAAGCATTCACATTCAGCAGCACAACGACAACAATGACGATGTCGATGCTAGCATAGGCGGTGGGGTGGATAGTAATAACCCAAGATTTAATGAAGTGAAGCTGGAAGTTTGCCGTCTTTCATCTCTAACTGAACAGCTTTTGAAGGAAGCTGGTTTATTTGTTAATGCAGATTAA 2349 40.78 MASPAATHLNVYPSSSLCRSKRSSLRLSRNQTIFTSSTTWERRSHSLKVVRSVLNNCKSNLNDNGASEEAKLLLERLYAQTQRLEEHVSKDPHFPQDLWIGLSLENLESDLQAALAVLKKKEEDLQDAERTILLERSQLNNAREKLEKQEEEITAAYRKQQELEDELKQANLNLASQARHIDELKLQIREKDEGIAAVESALTLKEDELKRMRADLAKKSEEAVKTDFELKSKSQLLTEANAVVKRQEVELQMLKKAVLEKEKELELSAKLQKLEEEKLEVIEKNLEKRTMEWLLAQEELKKMRKEASKKAVEMNKTVNDFNRVKKLLADVKTELVSSQKSLVSSKRKIEEQEDILERQMAELEEQKKGINSYMSSLKDAQIEVESERVKLRVAEAHNKELERDLLMEKELTDELQQQLKKEKSYLQQATEEKSFLQKELEHKNIGFKKTHDLLQDKASELVEAKLEIQHLKSEQVSLQLLLKEKDLEILDAQKKIEELNQEIIELQTLMSSKEAQLSQTTAMLKEKDECVQIMQNELKNTKLKISEAEAAVEHIVDLTNKLVISIKDGDDDVLKLNDDLSLNLQQQLFKKPTDNIRLQKKQLETELELTKESLRQKEMEILAAERALTVKDEELKTVLERLGTKEKEFEKMKEEMDEEAKDLRKLYALAEDNVGVEDLAIERLQVEAAKLEVEAATSALQKLTDMSRELLNKAGNSLEVHNDSRSIHIQQHNDNNDDVDASIGGGVDSNNPRFNEVKLEVCRLSSLTEQLLKEAGLFVNAD 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28279248 28282485 + CcPI632755_05g019160.1 Cco05g1916 179544

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1916 782 PANTHER SYNAPTONEMAL COMPLEX PROTEIN-RELATED 57 778 - GO:0007131(PANTHER)
Cco05g1916 782 Coils Coil 681 713 - -
Cco05g1916 782 Coils Coil 104 187 - -
Cco05g1916 782 Coils Coil 67 87 - -
Cco05g1916 782 Coils Coil 482 516 - -
Cco05g1916 782 Coils Coil 297 317 - -
Cco05g1916 782 Coils Coil 342 439 - -
Cco05g1916 782 Coils Coil 454 474 - -
Cco05g1916 782 Coils Coil 237 284 - -
Cco05g1916 782 Coils Coil 531 551 - -
Cco05g1916 782 Coils Coil 593 627 - -
Cco05g1916 782 Coils Coil 195 222 - -
Cco05g1916 782 Coils Coil 635 673 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1916 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g496 Blo01g01392 . . . . Bpe02g00557 . . . . Cma01g01507 . Car09g00395 . . . Cpe06g00331 . . . . . . . Cla05g01731 Cam05g1844 Cec05g1856 Cco05g1916 Clacu05g1832 Cmu05g1715 Cre05g1846 Cone4ag1779 Cone7ag1694 . . Lsi04g02121 Csa03g04327 Chy04g00374 . . . . . . . . . Sed05g1707 Cmo01g01562 Cmo09g00457 Cma09g00450 . . . . Cpe02g00447 Bhi09g02230 Tan01g3630 Cmetu04g2943 . Hepe01g2013 Mch11g0550 . . . . . . . . . . . Cme04g00416
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010102 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 33