Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1919 ATGTCATTGAAGGCGTCGAGTTCCGAGAAGAATTTGATGCTGCCGGTGTCGGATCCTCCACACGGCAGTGAAGAGAAAGAGCGATTGATCAGAGGCGACGAGAAGCTCTTCAGAGGCTCCGCCATGACCAAACGAGGAGCCTATGCTGCTCTCTCTTACATGTCTTGTGCAGTGCTATTGGTTTTGTTCAACAAAGCAGCGCTATCTTCTTATAATTTTCCAAGTGCAAACGTTGTTACACTTGTTCAGATGGTATGTTCATGTTGTTTTCTATATGCATTGAGACGCTCGAAAGTCATATCTTTTACAGTGGGTGATTCCTTGTCTGATAATGCTGCTTCAATGGTTTCAATGAATAAATTGAGGCAAACCAGTCCTCTTGCAGGGACCTATTTGCTTTACATGCTAGCTACCATGGAGTCTGTTCGTGGAGTAAATGTTCCCATGTACACTACCCTCAGGCGGACAACAGTTGTTTTCACAATGGTTGTGGAGTATCTTCTGGCAGGACAAAAGTATACATATTCAGTTGTTGGAAGTGTTGGTTTGATAGTTCTTGGTGCATTTATTGCTGGAGCTCGCGACTTGTCCTTTGACGTATATGGCTATTCTATTGTTTTCTTGTCCAACGTCACCACAGCAATCTACCTTGCAACTATTTCCCGCATTGGAAAATCAAGTGGTCTAAATAGCTTTGGCCTCATGTGGTGCAATGGAATCTTATGCGCTCCAGTTCTACTTTTCTGGACATTTATACGGGGTGACTTGGAGGCAACTATTAGCTTTCCTCATCTTTTTTCACCTGGATTTCTAGTAGTGATGTTTTGTTCGTGCACACTGGCTTTCTTCTTGAACTATAGTATATTTCTAAACACTACTCTAAATTCGGCAGTAACACAAACTATATGTGGTAATCTGAAGGATCTTTTCACAATTGGACTTGGCTGGATGATATTTGGCGGCCTTCCTTTTGATCTGCTAAATATAATTGGGCAACTTCTGGGTTTTATTGGCTCTGGAGGGTCTTGCTCTCTGAGCAGTTCAGAGGAATTGCCTCCGACACAAGCTCCGAATGCTACTCTTCCTTCAAAAAAGCCAAACCCTAAAACTCTCCTCCTTCAACTGTCTCCATTTTCTCCATGGCGTGTTCTCCTTTCCTAA 1161 42.98 MSLKASSSEKNLMLPVSDPPHGSEEKERLIRGDEKLFRGSAMTKRGAYAALSYMSCAVLLVLFNKAALSSYNFPSANVVTLVQMVCSCCFLYALRRSKVISFTVGDSLSDNAASMVSMNKLRQTSPLAGTYLLYMLATMESVRGVNVPMYTTLRRTTVVFTMVVEYLLAGQKYTYSVVGSVGLIVLGAFIAGARDLSFDVYGYSIVFLSNVTTAIYLATISRIGKSSGLNSFGLMWCNGILCAPVLLFWTFIRGDLEATISFPHLFSPGFLVVMFCSCTLAFFLNYSIFLNTTLNSAVTQTICGNLKDLFTIGLGWMIFGGLPFDLLNIIGQLLGFIGSGGSCSLSSSEELPPTQAPNATLPSKKPNPKTLLLQLSPFSPWRVLLS 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28293475 28299985 - CcPI632755_05g019190.1 Cco05g1919 179547

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1919 386 PANTHER SOLUTE CARRIER FAMILY 35 45 338 IPR050186 GO:0005794(PANTHER)|GO:0015297(PANTHER)
Cco05g1919 386 MobiDBLite consensus disorder prediction 1 27 - -
Cco05g1919 386 Pfam Triose-phosphate Transporter family 56 338 IPR004853 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1919 K15281 - - csv:101208375 633.254
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1919 Cco-Chr5:28293475 Cco11g0347 Cco-Chr11:3565926 1.70E-108 dispersed
Cco08g1416 Cco-Chr8:26080745 Cco05g1919 Cco-Chr5:28293475 2.50E-25 transposed
Cco11g0343 Cco-Chr11:3479950 Cco05g1919 Cco-Chr5:28293475 1.00E-112 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g492 . . . . . . . . . . . . Car09g00398 . . . Cpe06g00335 . . . . . . . Cla05g01734 Cam05g1847 Cec05g1859 Cco05g1919 Clacu05g1835 Cmu05g1718 Cre05g1849 . . . Cone20ag0675 Lsi04g02123 Csa03g04330 Chy04g00371 . Blo17g00017 . . Bda13g01257 Bpe14g00583 . . Bma02g00021 Sed13g2020 . Cmo09g00461 Cma09g00453 . . . . . Bhi09g02233 Tan01g3637 Cmetu04g0377 . Hepe01g2016 Mch11g0552 . . . . . . . . . . . Cme04g00413
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001360 2 7 2 2 2 2 3 2 2 1 2 2 2 3 3 2 2 2 3 2 2 2 2 3 3 2 2 2 6 2 74