Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1924 ATGAGGGGGAAGACTGGGCTGGGCCCATCTTGTTTCGGATCCGTGGATCTCTGCTCCGGCATTTTCTCTTTCTCTTTTGTTGCAGATCTTTTCCGCTGTTTCTTTAATCTCGCGAACTCAAATCCAAGCTTACGCGGTTTTGTTTTTCATGAGGTTCTGATCGTTGCGCGGTTTTCGAGTTTACACCAAATGATGGAATCGGAAATCCTTGTACCTGCTGATGGGCTCAAACTGACCCTTCAAAATGGGTTTCATGAGCATGTTTCTGCCTCCCCAGAGGAAATTGTTCCTAAGGTGATTGTGAGTGAGGGCATGAACAAAGACACAGGAGCTACAATGCAGCAAGAAAATATCGAAAATGATATCAAATTGAGTGGCAGTGCAACTAACGAATCGACCACAAGGGAACACGCTGAGGGATCAAATTTTCCGGCAGAAACCGATATATCAACCCTTTCTAAGGAAGGAGAGGAAAAGAATGTTGATCCTCCCAAGAAAGTGAAACCAGAGAAGGGTCAAATCAAGAGCAAGAATGAAAAGTCATCAGGCCTTAAACACATTTCTTCGACTGGGGTGAATAAGAATAAAGATGGAAAAGATGCAGAACAGACTGCTGCTCTTCTAAATGATTCAGGTACAGGTACATCGCATCCACACTCAAAACGGCCTAGTAAGAGTAGATCATTCAATGAGAGGCAAGCTCAAGTGCCAAAGCAACCTGAGAAGTCTGATGGGGAAGGCTCCAAGGAGAATACGAACCTGAAACCTTTGAAGAAAGGTCAACCTAGTAAATCAGAAGGAGAGTCGGAATCTTCTTTAAGTCCCAGAGCAGGAGATGAAAAACCAAATAGGGTTGGGAGACTTCCTAACTATGGTTTTAGTTTTAGATGCAACGAGCGTGCTGAGAAAAGAAGAGAGTTCTATTCGAAACTTGAGGAAAAGATACAAGCTAAAGAAGTAGAAAAGAACACTTTACAGGCAAAATCCAAGGAAACTCAAGAGGCTGAGATTAAAATGCTTAGAAAGAGTTTGAACTTTAAAGCAACTCCCATGCCGAGCTTTTATCAAGAACCACCTCCTCCCAAAGTAGAATTGAAAAAGATACCACCCACAAGAGCCAAGTCTCCCAAGCTTGGCCGAAAGAAGAGTTCAACCCCAGCAGCAGCAGACTCTTCAAGCAATGATGGCGGTGATGTGCGATCAGCTCGCTTAAGTCTCGATGAGAATGTGGCTCTGAATAACAATTCTAAGAGGGTCTCTCCTGCCCGTTCAGACAAGCCGAAACGCAGGTCTCTTCCTAATCTGCCTTCTGAGAAAACTACGATACCTGGTGTCATAACAAATGCAGCAGGGAAATCCTCTGCGACCAAAGTGAAAAATGTGGAGAAGCCAGCAGCAGCTGCAGCAGCTACTACTACTACTACAAACGGAAAGAAAGAAGAAAAACGGGCATCATCTGAAACAGCAACAACAAACAAGTCTGCTTGTTTAATATCCATAGACGAAGAGAAAACAGCAACAACAAACGAAGTCGTCAATCTCAGCCAGGAGGAGAATGGAATCGAGCCTAGCGAAACAGAGAACCAGACAGACGATGATGAACCAGAGAATGAAGAACAATATCAGCACCACAGCTCCGTTGAAGACGGTGCAGATTTGGAGCAGTCATCGAACATCGTTTGA 1683 44.21 MRGKTGLGPSCFGSVDLCSGIFSFSFVADLFRCFFNLANSNPSLRGFVFHEVLIVARFSSLHQMMESEILVPADGLKLTLQNGFHEHVSASPEEIVPKVIVSEGMNKDTGATMQQENIENDIKLSGSATNESTTREHAEGSNFPAETDISTLSKEGEEKNVDPPKKVKPEKGQIKSKNEKSSGLKHISSTGVNKNKDGKDAEQTAALLNDSGTGTSHPHSKRPSKSRSFNERQAQVPKQPEKSDGEGSKENTNLKPLKKGQPSKSEGESESSLSPRAGDEKPNRVGRLPNYGFSFRCNERAEKRREFYSKLEEKIQAKEVEKNTLQAKSKETQEAEIKMLRKSLNFKATPMPSFYQEPPPPKVELKKIPPTRAKSPKLGRKKSSTPAAADSSSNDGGDVRSARLSLDENVALNNNSKRVSPARSDKPKRRSLPNLPSEKTTIPGVITNAAGKSSATKVKNVEKPAAAAAATTTTTNGKKEEKRASSETATTNKSACLISIDEEKTATTNEVVNLSQEENGIEPSETENQTDDDEPENEEQYQHHSSVEDGADLEQSSNIV 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28352359 28356596 + CcPI632755_05g019240.1 Cco05g1924 179552

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1924 560 MobiDBLite consensus disorder prediction 488 523 - -
Cco05g1924 560 Pfam Targeting protein for Xklp2 (TPX2) domain 293 368 IPR027329 -
Cco05g1924 560 PANTHER PROTEIN WVD2-LIKE 4 108 460 IPR044833 GO:0008017(InterPro)
Cco05g1924 560 MobiDBLite consensus disorder prediction 347 560 - -
Cco05g1924 560 MobiDBLite consensus disorder prediction 385 399 - -
Cco05g1924 560 MobiDBLite consensus disorder prediction 434 455 - -
Cco05g1924 560 Coils Coil 298 335 - -
Cco05g1924 560 MobiDBLite consensus disorder prediction 237 253 - -
Cco05g1924 560 MobiDBLite consensus disorder prediction 126 149 - -
Cco05g1924 560 MobiDBLite consensus disorder prediction 151 182 - -
Cco05g1924 560 MobiDBLite consensus disorder prediction 126 294 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1924 K28095 - - csv:101207396 729.169
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1803 Cco-Chr2:30856991 Cco05g1924 Cco-Chr5:28352359 5.40E-21 dispersed
Cco05g1924 Cco-Chr5:28352359 Cco10g1794 Cco-Chr10:31528532 3.80E-21 dispersed
Cco05g1924 Cco-Chr5:28352359 Cco06g0693 Cco-Chr6:7761812 5.20E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g483 . Blo12g01076 Bda01g00746 Bda03g00071 . . Bma04g00068 . . . Cma01g01504 . Car09g00402 . . . Cpe06g00341 . . . . . . . Cla05g01738 Cam05g1851 Cec05g1863 Cco05g1924 Clacu05g1841 Cmu05g1722 Cre05g1854 Cone4ag1784 Cone7ag1699 Cone17ag1020 Cone20ag0671 Lsi04g02130 Csa03g04336 Chy04g00366 . . Blo18g00025 Bda01g01001 . . Bpe04g00056 . . Sed05g1701 Cmo01g01561 Cmo09g00468 Cma09g00459 . . . . Cpe02g00451 Bhi09g02239 Tan01g3647 Cmetu04g2939 . Hepe01g2022 Mch11g0556 . . . . . . . . . . . Cme04g00408
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006493 2 1 1 1 2 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 2 38