Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g1928 | ATGGTTTATTCAAGGAAGTTCAGAGGAGTCAGGCAGCGGCAGTGGGGCTCTTGGGTGTCAGAGATTCGCCACCCACTGCTGAAGAGAAGGGTGTGGCTGGGGACATTTGACACAGCAGAGGATGCAGCTCGAGCGTATGATCAAGCAGCCATTTTGATGAATGGCCAAAACGCCAAGACCAATTTCCCTGCATCTAAAGATCAATCTGAAGAAGCTAGCCATGGCCATGGTTCTTCTCCAATGTCCCCAAAAGCACTTTCAGAGCTACTCAGCACAAAGCTCAGAAAGTGCTGCAAGAATCCATCTCCCTCATTGACATGCCTGCGGCTCGACAGTGACAACGCTCACATCGGCGTATGGCAGAAGCGTGCAGGCACTCGAGCAACCTCTAATTGGGTCATGAGGATTGAGCTAGGGAAGAAAGAGATACCGTCCCCGTCCCTGTCGCCTGAATCGACAAGCCAGGAAGCTGATGACCATGGGAATGGAATTGATGAAGAAGACAGAATTGCAATGCAAATGATTGAAGAGTTACTCAATTGGAACTGCCCTCTTCCTTCTACTTCAAGCTAA | 573 | 49.74 | MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKTNFPASKDQSEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVWQKRAGTRATSNWVMRIELGKKEIPSPSLSPESTSQEADDHGNGIDEEDRIAMQMIEELLNWNCPLPSTSS | 190 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 28390230 | 28391396 | + | CcPI632755_05g019280.1 | Cco05g1928 | 179556 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g1928 | 190 | FunFam | Ethylene-responsive transcription factor 2 | 5 | 64 | - | - | |
Cco05g1928 | 190 | ProSiteProfiles | AP2/ERF domain profile. | 6 | 63 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g1928 | 190 | MobiDBLite | consensus disorder prediction | 142 | 167 | - | - | |
Cco05g1928 | 190 | MobiDBLite | consensus disorder prediction | 59 | 84 | - | - | |
Cco05g1928 | 190 | PRINTS | Ethylene responsive element binding protein signature | 7 | 18 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g1928 | 190 | PRINTS | Ethylene responsive element binding protein signature | 29 | 45 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g1928 | 190 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 5 | 134 | IPR050913 | - | |
Cco05g1928 | 190 | SMART | rav1_2 | 6 | 69 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g1928 | 190 | CDD | AP2 | 6 | 65 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g1928 | 190 | Gene3D | AP2/ERF domain | 5 | 65 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g1928 | 190 | SUPERFAMILY | DNA-binding domain | 6 | 65 | IPR016177 | GO:0003677(InterPro) | |
Cco05g1928 | 190 | Pfam | AP2 domain | 6 | 55 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g1928 | Cco-Chr5:28390230 | Cco07g1345 | Cco-Chr7:27552298 | 3.50E-51 | dispersed | |
Cco11g0324 | Cco-Chr11:3253956 | Cco05g1928 | Cco-Chr5:28390230 | 2.50E-54 | wgd | |
Cco05g1928 | Cco-Chr5:28390230 | Cco06g1292 | Cco-Chr6:23095079 | 8.10E-56 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59330 | PF00847 | AP2 | 3.80E-13 | CL0081 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g1928 | - | - | - | 0.0 |