Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1928 ATGGTTTATTCAAGGAAGTTCAGAGGAGTCAGGCAGCGGCAGTGGGGCTCTTGGGTGTCAGAGATTCGCCACCCACTGCTGAAGAGAAGGGTGTGGCTGGGGACATTTGACACAGCAGAGGATGCAGCTCGAGCGTATGATCAAGCAGCCATTTTGATGAATGGCCAAAACGCCAAGACCAATTTCCCTGCATCTAAAGATCAATCTGAAGAAGCTAGCCATGGCCATGGTTCTTCTCCAATGTCCCCAAAAGCACTTTCAGAGCTACTCAGCACAAAGCTCAGAAAGTGCTGCAAGAATCCATCTCCCTCATTGACATGCCTGCGGCTCGACAGTGACAACGCTCACATCGGCGTATGGCAGAAGCGTGCAGGCACTCGAGCAACCTCTAATTGGGTCATGAGGATTGAGCTAGGGAAGAAAGAGATACCGTCCCCGTCCCTGTCGCCTGAATCGACAAGCCAGGAAGCTGATGACCATGGGAATGGAATTGATGAAGAAGACAGAATTGCAATGCAAATGATTGAAGAGTTACTCAATTGGAACTGCCCTCTTCCTTCTACTTCAAGCTAA 573 49.74 MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKTNFPASKDQSEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVWQKRAGTRATSNWVMRIELGKKEIPSPSLSPESTSQEADDHGNGIDEEDRIAMQMIEELLNWNCPLPSTSS 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28390230 28391396 + CcPI632755_05g019280.1 Cco05g1928 179556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1928 190 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Cco05g1928 190 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g1928 190 MobiDBLite consensus disorder prediction 142 167 - -
Cco05g1928 190 MobiDBLite consensus disorder prediction 59 84 - -
Cco05g1928 190 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g1928 190 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g1928 190 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 134 IPR050913 -
Cco05g1928 190 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g1928 190 CDD AP2 6 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g1928 190 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g1928 190 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677(InterPro)
Cco05g1928 190 Pfam AP2 domain 6 55 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1928 Cco-Chr5:28390230 Cco07g1345 Cco-Chr7:27552298 3.50E-51 dispersed
Cco11g0324 Cco-Chr11:3253956 Cco05g1928 Cco-Chr5:28390230 2.50E-54 wgd
Cco05g1928 Cco-Chr5:28390230 Cco06g1292 Cco-Chr6:23095079 8.10E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59330 PF00847 AP2 3.80E-13 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1928 - - - 0.0