Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1934 ATGAACGATTTGGAGCTCTCGATTCGGGGAATTGCAACGTTCTCTTCTTGCGGAAAAAACTACACGCCATACTTCGAAACGAAACGAAGAAGGAGAAGAAATTTCGATTCGAAGATGAAAAGAGGACCTTCAACTTCAACGATTTCTTCGCTACTGTCGCTGAGGTTCGCTCGTCAACAATCTTCGAAGTTCGGCGTTGATCAGCTTCGTCCTCGGTTCCTCTCTTCGTCTACGAAGCCTTCAGGGCTATTAAATCAGTACAGGCATCTAGTTGAGCGAGGGGAGCTACAACCTGATCCTTTTCAAGAGAGAGTGGCTTCCGAATTGGAGACTTTGCTTGGAAGGTTGGAGCAATATGAAAAGGATATGGAAGAGTATCATGTAAAACTAGCTAACTGGAAGCAGAATAGGGAGAATGAGAGGCGCAGACTTTTAATGGAGGAAGCTGAGTCTAAACAACAGAGTGATGTATGGACATCAGTAAACAAGCGCCGAAGCAAACTTGTTGAAACATTGATGTTTCGGAAAAATTCTGAAAATATTGAGCCTGGAGTTGGAAAATGGGTTTCATACCTTAACCGAGAGAGGAAGTTGGATTCACTTGTAGGTCGCTGTCCTTCTGCTCCACATGCTCCTAGAGGACTGTACATATATGGCAATGTTGGAAGTGGGAAGACAATGCTCATGGATATGTTTTACAATGCGACTGAAGGAATTGTTAAACATCGACAAAGGTACCATTTCCATGAGGCTATGCTTAAAATTAATGAAGATATGCACAAGATATGGAAAAATCAGGTGAGGGAGAAATCTTCACAGTCAAGCATTTCAAGTTGGATTATGAATCTCCCCTTTGACACAAAAGTGAAAGAGTGGTTGGCTGCAGAAGAAAAATACAAGCAAGAGGTACAGATGAAAAACATTCTTCCTGCTGTTGCTGATAAATTTCTTGTTGATCAGCAAGCAGGTCAAGTAGGAGCTAGCATTCTTTGCTTCGATGAGATACAGACAGTTGATGTATTTGCTATTGTGGCCTTGTCTGGAATTGTAAGCAGATTGTTGAGTACTGGAACAGTTCTTGTAGCCACCAGTAATCGAGCTCCAAAGGACTTGAATCAGGATGGGATGCAGAAGGATATCTTCCAAAACTTTGTCACCAAACTGGAGGAGCATTGTGAGTTTGTTCTTATTGGCAGTGAGATTGATTACCGGCGCTTTATAGCCCAAAGGTCTTTTGACCAGGTGCATTATTTCTGGCCTTTAGATTGCGCATCAGTGGGAAAATTCGAAAAGATGTGGATCGAAATCACCAGCCAATTGGGAGGACAAATCACATCTGAGACTATTCCTGTGATGTTTGGAAGAAAACTGGAGGTGTCAGAAAGCTGCAATGGAGTGGCACGATTTGCATTTGATTTTCTCTGTGGTCAACCGGTAGGTGCTGCAGATTATATTGCCTTAGCCAAAAACTACCACACTGTCTTCATATCTGACATCCCAATGATGAGCATGCGCATTCGTGACAAGGCCCGGCGGTTCATCACTCTCATTGATGAGCTATACAATCACCATTGCTGCCTATTTTGCTTGGCAGCTACTTCAATTGAGGACTTATTTCAAGGCACTGAAGAGGGTGCTCTTTTCGATTTGGAGAGTTTTCAGTTTGAAACAGAGGCAGAAGGGGGAAAGCTTCGTCGAAATGTCCTAGTGGAAGGCAACGTAGGATCAGTAGGTGCTCCAACTGCAATTGTGTCTATGCTATCTGGTCAAGAAGAGATGTTTGCATTCCGTCGAGCTGTTTCTCGATTGATTGAGATGCAGACACCTTTATACTTGGAGGGAGTGCGAAACCTTCATCCATATTTCCAAAGACGAGAACAAGAATTATCAGTTGATCCACCGGCCAGGTTCCAGTTTCAGCAATCATCTTGA 1932 43.22 MNDLELSIRGIATFSSCGKNYTPYFETKRRRRRNFDSKMKRGPSTSTISSLLSLRFARQQSSKFGVDQLRPRFLSSSTKPSGLLNQYRHLVERGELQPDPFQERVASELETLLGRLEQYEKDMEEYHVKLANWKQNRENERRRLLMEEAESKQQSDVWTSVNKRRSKLVETLMFRKNSENIEPGVGKWVSYLNRERKLDSLVGRCPSAPHAPRGLYIYGNVGSGKTMLMDMFYNATEGIVKHRQRYHFHEAMLKINEDMHKIWKNQVREKSSQSSISSWIMNLPFDTKVKEWLAAEEKYKQEVQMKNILPAVADKFLVDQQAGQVGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPKDLNQDGMQKDIFQNFVTKLEEHCEFVLIGSEIDYRRFIAQRSFDQVHYFWPLDCASVGKFEKMWIEITSQLGGQITSETIPVMFGRKLEVSESCNGVARFAFDFLCGQPVGAADYIALAKNYHTVFISDIPMMSMRIRDKARRFITLIDELYNHHCCLFCLAATSIEDLFQGTEEGALFDLESFQFETEAEGGKLRRNVLVEGNVGSVGAPTAIVSMLSGQEEMFAFRRAVSRLIEMQTPLYLEGVRNLHPYFQRREQELSVDPPARFQFQQSS 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28440971 28450038 + CcPI632755_05g019340.1 Cco05g1934 179562

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1934 643 FunFam AFG1-like ATPase isoform C 204 405 - -
Cco05g1934 643 PANTHER ATPASE N2B 39 618 IPR005654 GO:0005524(InterPro)|GO:0005737(PANTHER)|GO:0005739(PANTHER)|GO:0016887(InterPro)|GO:0016887(PANTHER)
Cco05g1934 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 210 410 IPR027417 -
Cco05g1934 643 Pfam AFG1-like ATPase 197 543 IPR005654 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco05g1934 643 NCBIfam cell division protein ZapE 198 544 IPR005654 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco05g1934 643 Coils Coil 102 150 - -
Cco05g1934 643 Gene3D - 198 405 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1934 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1934 Cco-Chr5:28440971 Cco06g1464 Cco-Chr6:25102614 5.00E-41 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g464 . Blo12g01080 . Bda03g00067 . . Bma04g00064 . . . . . Car09g00408 . . . . . . . . . . . Cla05g01746 Cam05g1859 Cec05g1871 Cco05g1934 Clacu05g1850 Cmu05g1731 Cre05g1863 . . . . Lsi04g02139 Csa03g04343 Chy04g00359 . . . . . . Bpe04g00052 . . Sed05g1692 . Cmo09g00473 Cma09g00466 . . . . . Bhi09g02257 Tan01g3659 Cmetu04g0660 . . . . . . . . . . . . . . Cme04g00401
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008383 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 3 2 1 35