Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g1936 | ATGAACACTCGACACGTCATCAACTACCAAAATATCAGAAAATCCCGTGGCTTACTGAGCCGAGTCGAGCCGTTTAGAGCACAATGGAAACCAGTCGATTCGGTAATGGAAGCAAATGGGGGATTGGTGGCTGGATCTTACAAGAGGAATGAACTTGTTCGGATTCGCCACGATTCCGATAGTGGGCCTAAACCTCTGAAGAATTTAAACAGCCAAACATGTCAAATATGTGGCGACACAGTTGGTCTTACGGCCTCTGGCGACGTCTTTGTTGCTTGCAATGAATGTGCCTTTCCCGTTTGTCGTCCTTGTTATGAGTATGAGAGGAAAGATGGAAACCAGTCTTGCCCTCAGTGCAAGACTAGATACAAGAGGCACAAAGGGAGCCCTCGCGTTGATGGTGATGATGATGAGGATGATGTGGATGACATTGAGAATGAGTTTAATTACGTCCAAGGAAGTGGCAAGACAAAACGACAGTGGCATGGGGAAGATGTTGAACTATCTACTTCTGCGAGACATGAGTCTCAACAGCCTATACCACTCCTGACAAATGGCCAATCAGTGTCGGGCGAAATTCCTTGTGCTACCCCTGACAATCAATCAGTGCGAACCACATCTGGTCCTTTGGGTCCTCCAGAAAAGCATATGCAATCCCATCCATATGTTGACCCACGGCAGCCAGTTCCTGTGAGAATTGTAGACCCATCAAAGGATTTGAATTCTTATGGCCTTGGGAATGTTGACTGGAAGGAAAGAGTGGAAGGTTGGAAACTGAAACAAGAGAAAAACATAATGCAGATGACAAGTAGGTACACTGAAGGGAAGGGGGACATGGAGGGCACTGGGTCAAATGGAGAAGAACTTCAAATGGCTGATGATGCTAGACAACCTTTGAGTCGTGTCGTTCCTATTCCATCCTCTCACTTGACCCCGTATCGTGTTGTGATCATACTTCGTCTTATTATTCTGGGCTTCTTCTTACAGTACCGTTTGACACACCCTGTGAAGGATGCATACCCCCTGTGGTTAACATCAGTTATTTGTGAAGTTTGGTTTGCCCTTTCCTGGCTTCTGGATCAGTTTCCAAAATGGTCTCCTGTCAATCGCGAGACCTTCCTTGAGAGACTTGCGCTAAGATATGATCGTGAAGGAGAACCATCACAGTTAGCTCCTGTTGATGTCTTTGTCAGTACAGTGGATCCACTCAAAGAGCCTCCACTTGTCACAGCAAACACTGTGCTTTCCATACTTGCTGTGGACTACCCTGTGGACAAAGTCTCCTGCTATGTATCAGATGATGGTTCAGCAATGCTTACTTTTGAAGCGCTCTCTGAAACTGCAGAATTTGCAAGGAAGTGGGTGCCCTTTTGCAAGAAGCACAACATTGAGCCAAGAGCCCCTGAATTTTATTTTGCTCAAAAAATAGATTACTTGAAGGACAAGATTAAACCTTCTTTTGTCAAAGAGAGGCGAGCAATGAAGAGAGAGTATGAAGAATTCAAGATTCGGATCAATGCGCTTGTTGCCAAAGCACAAAAGATGCCCGAGGAAGGTTGGACCATGCAGGATGGAACGCCATGGCCAGGAAACAATCCCAGGGATCATCCTGGAATGATACAGGTTTTCTTAGGCCACAGTGGAGGTCTTGATACTGATGGCAATGAACTACCACGACTTGTTTATGTTTCTCGTGAGAAGCGACCTGGTTTCCAGCACCACAAGAAAGCCGGAGCCATGAATGCATTGATCCGAGTTTCTGCTGTGCTTACTAATGGAGCATATCTATTGAATGTCGATTGTGATCACTACTTCAACAACAGCAAAGCTCTCAAGGAAGCCATGTGTTTCATGATGGACCCTGCTTATGGGAAGAAAACATGTTATGTACAGTTCCCACAACGTTTTGATGGCATTGATTTGCATGATCGATATGCCAATCGCAACATTGTCTTTTTTGACATAAACTTGAAAGGGTTGGATGGCCTCCAGGGTCCAGTCTATGTGGGAACTGGTTGTTGTTTCAATCGGCAAGCTTTATATGGTTATGATCCAGTTCTGACTGAGGCAGATTTGGAACCGAATATTATCATTAAGAGTTGTTGTGGTTCAAGAAAGAAGGGCAGGAACAAGAAGTACATCGACAAAAAGAGGGCTGCAAAGAGGACTGAATCTACCATTCCTATCTTTAATATGGAAGATATTGAGGAAGGCGTTGAAGGATATGATGATGAGAGGTCACTACTGATGTCTCAGAAGAGTTTAGAGAAGCGCTTTGGCCAATCTCCAGTTTTTATTGCAGCCACTTTCATGGAACAGGGAGGTATTCCACCTTCCACCAATCCTGCAACTCTTCTAAAGGAAGCAATTCATGTTATCAGTTGTGGATATGAAGATAAGACAGAATGGGGCAAAGAGATTGGGTGGATCTATGGTTCTGTGACAGAAGATATTTTGACTGGGTTTAAGATGCATGCTCGCGGGTGGATATCAATTTACTGCATGCCTCCACGCCCGGCATTCAAGGGATCTGCTCCCATCAATCTTTCTGATCGTTTAAACCAGGTGCTTCGATGGGCTTTGGGTTCCATAGAAATCTTGCTGAGCAGGCATTGTCCTATCTGGTATGGCTACAATGGAAGGCTGAAGCTTTTGGAGAGAATAGCATACATCAATACTATCGTCTACCCTATCACCTCAATTCCACTTATTGCTTACTGTATGCTTCCGGCGTTCTGTCTGTTGACTGGAAAGTTCATTATTCCTGAGATAAGCAACTTTGCCAGTATGTGGTTCATTCTCCTTTTCGTCTCCATCTTTGCAACGGGCATTCTTGAACTCAGATGGAGTGGTGTTAGCATTGAAGACTGGTGGAGGAACGAACAATTTTGGGTCATTGGTGGTACTTCAGCTCATCTGTTCGCCGTCTTCCAGGGTCTCTTAAAGGTTCTTGCTGGAATCGATACCAACTTCACTGTGACGTCAAAGGCCAGCGATGACGATGGGGATTTTGCAGAGCTTTATGTGTTCAAATGGACTTCTCTCCTCATCCCTCCTACCACTGTCCTGATTATGAATATGGTTGGTATAGTGGCTGGTGTATCATATGCCATTAACAGTGGTTACCAGTCTTGGGGTCCTCTCTTTGGTAAGCTGTTCTTTGCATTGTGGGTTATTGTCCATTTATATCCTTTCCTAAAGGGTTTACTGGGAAGGCAAAATCGTACACCGACCATTGTCATTGTCTGGTCTATTCTCCTTGCTTCCATTTTCTCATTGCTCTGGGTGCGAATCGATCCATTTACCTCAGCCTCGACAAAGGCTGCTAACGGTCAATGTGGTATCAATTGCTAG | 3354 | 44.87 | MNTRHVINYQNIRKSRGLLSRVEPFRAQWKPVDSVMEANGGLVAGSYKRNELVRIRHDSDSGPKPLKNLNSQTCQICGDTVGLTASGDVFVACNECAFPVCRPCYEYERKDGNQSCPQCKTRYKRHKGSPRVDGDDDEDDVDDIENEFNYVQGSGKTKRQWHGEDVELSTSARHESQQPIPLLTNGQSVSGEIPCATPDNQSVRTTSGPLGPPEKHMQSHPYVDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKNIMQMTSRYTEGKGDMEGTGSNGEELQMADDARQPLSRVVPIPSSHLTPYRVVIILRLIILGFFLQYRLTHPVKDAYPLWLTSVICEVWFALSWLLDQFPKWSPVNRETFLERLALRYDREGEPSQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIKPSFVKERRAMKREYEEFKIRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGLQGPVYVGTGCCFNRQALYGYDPVLTEADLEPNIIIKSCCGSRKKGRNKKYIDKKRAAKRTESTIPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERIAYINTIVYPITSIPLIAYCMLPAFCLLTGKFIIPEISNFASMWFILLFVSIFATGILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDDDGDFAELYVFKWTSLLIPPTTVLIMNMVGIVAGVSYAINSGYQSWGPLFGKLFFALWVIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFTSASTKAANGQCGINC | 1117 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 28461586 | 28467789 | - | CcPI632755_05g019360.1 | Cco05g1936 | 179564 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g1936 | 1117 | MobiDBLite | consensus disorder prediction | 195 | 228 | - | - | |
Cco05g1936 | 1117 | FunFam | Cellulose synthase | 56 | 147 | - | - | |
Cco05g1936 | 1117 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 411 | 685 | IPR029044 | - | |
Cco05g1936 | 1117 | CDD | mRING-HC-C4C4_CesA | 72 | 122 | - | - | |
Cco05g1936 | 1117 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 56 | 147 | IPR013083 | - | |
Cco05g1936 | 1117 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 381 | 481 | IPR029044 | - | |
Cco05g1936 | 1117 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 551 | 688 | IPR029044 | - | |
Cco05g1936 | 1117 | Pfam | Zinc-binding RING-finger | 64 | 141 | IPR027934 | - | |
Cco05g1936 | 1117 | SUPERFAMILY | RING/U-box | 57 | 146 | - | - | |
Cco05g1936 | 1117 | Coils | Coil | 491 | 511 | - | - | |
Cco05g1936 | 1117 | ProSiteProfiles | Zinc finger RING-type profile. | 74 | 120 | IPR001841 | - | |
Cco05g1936 | 1117 | PANTHER | X-BOX TRANSCRIPTION FACTOR-RELATED | 301 | 1086 | - | GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER) | |
Cco05g1936 | 1117 | FunFam | Cellulose synthase | 510 | 684 | - | - | |
Cco05g1936 | 1117 | Pfam | Cellulose synthase | 393 | 1108 | IPR005150 | GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g1936 | Cco-Chr5:28461586 | Cco09g0397 | Cco-Chr9:3610243 | 0.00E+00 | dispersed | |
Cco05g1936 | Cco-Chr5:28461586 | Cco10g1101 | Cco-Chr10:23307788 | 7.00E-240 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g1936 | K10999 | - | csv:101205724 | 2197.93 |