Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1936 ATGAACACTCGACACGTCATCAACTACCAAAATATCAGAAAATCCCGTGGCTTACTGAGCCGAGTCGAGCCGTTTAGAGCACAATGGAAACCAGTCGATTCGGTAATGGAAGCAAATGGGGGATTGGTGGCTGGATCTTACAAGAGGAATGAACTTGTTCGGATTCGCCACGATTCCGATAGTGGGCCTAAACCTCTGAAGAATTTAAACAGCCAAACATGTCAAATATGTGGCGACACAGTTGGTCTTACGGCCTCTGGCGACGTCTTTGTTGCTTGCAATGAATGTGCCTTTCCCGTTTGTCGTCCTTGTTATGAGTATGAGAGGAAAGATGGAAACCAGTCTTGCCCTCAGTGCAAGACTAGATACAAGAGGCACAAAGGGAGCCCTCGCGTTGATGGTGATGATGATGAGGATGATGTGGATGACATTGAGAATGAGTTTAATTACGTCCAAGGAAGTGGCAAGACAAAACGACAGTGGCATGGGGAAGATGTTGAACTATCTACTTCTGCGAGACATGAGTCTCAACAGCCTATACCACTCCTGACAAATGGCCAATCAGTGTCGGGCGAAATTCCTTGTGCTACCCCTGACAATCAATCAGTGCGAACCACATCTGGTCCTTTGGGTCCTCCAGAAAAGCATATGCAATCCCATCCATATGTTGACCCACGGCAGCCAGTTCCTGTGAGAATTGTAGACCCATCAAAGGATTTGAATTCTTATGGCCTTGGGAATGTTGACTGGAAGGAAAGAGTGGAAGGTTGGAAACTGAAACAAGAGAAAAACATAATGCAGATGACAAGTAGGTACACTGAAGGGAAGGGGGACATGGAGGGCACTGGGTCAAATGGAGAAGAACTTCAAATGGCTGATGATGCTAGACAACCTTTGAGTCGTGTCGTTCCTATTCCATCCTCTCACTTGACCCCGTATCGTGTTGTGATCATACTTCGTCTTATTATTCTGGGCTTCTTCTTACAGTACCGTTTGACACACCCTGTGAAGGATGCATACCCCCTGTGGTTAACATCAGTTATTTGTGAAGTTTGGTTTGCCCTTTCCTGGCTTCTGGATCAGTTTCCAAAATGGTCTCCTGTCAATCGCGAGACCTTCCTTGAGAGACTTGCGCTAAGATATGATCGTGAAGGAGAACCATCACAGTTAGCTCCTGTTGATGTCTTTGTCAGTACAGTGGATCCACTCAAAGAGCCTCCACTTGTCACAGCAAACACTGTGCTTTCCATACTTGCTGTGGACTACCCTGTGGACAAAGTCTCCTGCTATGTATCAGATGATGGTTCAGCAATGCTTACTTTTGAAGCGCTCTCTGAAACTGCAGAATTTGCAAGGAAGTGGGTGCCCTTTTGCAAGAAGCACAACATTGAGCCAAGAGCCCCTGAATTTTATTTTGCTCAAAAAATAGATTACTTGAAGGACAAGATTAAACCTTCTTTTGTCAAAGAGAGGCGAGCAATGAAGAGAGAGTATGAAGAATTCAAGATTCGGATCAATGCGCTTGTTGCCAAAGCACAAAAGATGCCCGAGGAAGGTTGGACCATGCAGGATGGAACGCCATGGCCAGGAAACAATCCCAGGGATCATCCTGGAATGATACAGGTTTTCTTAGGCCACAGTGGAGGTCTTGATACTGATGGCAATGAACTACCACGACTTGTTTATGTTTCTCGTGAGAAGCGACCTGGTTTCCAGCACCACAAGAAAGCCGGAGCCATGAATGCATTGATCCGAGTTTCTGCTGTGCTTACTAATGGAGCATATCTATTGAATGTCGATTGTGATCACTACTTCAACAACAGCAAAGCTCTCAAGGAAGCCATGTGTTTCATGATGGACCCTGCTTATGGGAAGAAAACATGTTATGTACAGTTCCCACAACGTTTTGATGGCATTGATTTGCATGATCGATATGCCAATCGCAACATTGTCTTTTTTGACATAAACTTGAAAGGGTTGGATGGCCTCCAGGGTCCAGTCTATGTGGGAACTGGTTGTTGTTTCAATCGGCAAGCTTTATATGGTTATGATCCAGTTCTGACTGAGGCAGATTTGGAACCGAATATTATCATTAAGAGTTGTTGTGGTTCAAGAAAGAAGGGCAGGAACAAGAAGTACATCGACAAAAAGAGGGCTGCAAAGAGGACTGAATCTACCATTCCTATCTTTAATATGGAAGATATTGAGGAAGGCGTTGAAGGATATGATGATGAGAGGTCACTACTGATGTCTCAGAAGAGTTTAGAGAAGCGCTTTGGCCAATCTCCAGTTTTTATTGCAGCCACTTTCATGGAACAGGGAGGTATTCCACCTTCCACCAATCCTGCAACTCTTCTAAAGGAAGCAATTCATGTTATCAGTTGTGGATATGAAGATAAGACAGAATGGGGCAAAGAGATTGGGTGGATCTATGGTTCTGTGACAGAAGATATTTTGACTGGGTTTAAGATGCATGCTCGCGGGTGGATATCAATTTACTGCATGCCTCCACGCCCGGCATTCAAGGGATCTGCTCCCATCAATCTTTCTGATCGTTTAAACCAGGTGCTTCGATGGGCTTTGGGTTCCATAGAAATCTTGCTGAGCAGGCATTGTCCTATCTGGTATGGCTACAATGGAAGGCTGAAGCTTTTGGAGAGAATAGCATACATCAATACTATCGTCTACCCTATCACCTCAATTCCACTTATTGCTTACTGTATGCTTCCGGCGTTCTGTCTGTTGACTGGAAAGTTCATTATTCCTGAGATAAGCAACTTTGCCAGTATGTGGTTCATTCTCCTTTTCGTCTCCATCTTTGCAACGGGCATTCTTGAACTCAGATGGAGTGGTGTTAGCATTGAAGACTGGTGGAGGAACGAACAATTTTGGGTCATTGGTGGTACTTCAGCTCATCTGTTCGCCGTCTTCCAGGGTCTCTTAAAGGTTCTTGCTGGAATCGATACCAACTTCACTGTGACGTCAAAGGCCAGCGATGACGATGGGGATTTTGCAGAGCTTTATGTGTTCAAATGGACTTCTCTCCTCATCCCTCCTACCACTGTCCTGATTATGAATATGGTTGGTATAGTGGCTGGTGTATCATATGCCATTAACAGTGGTTACCAGTCTTGGGGTCCTCTCTTTGGTAAGCTGTTCTTTGCATTGTGGGTTATTGTCCATTTATATCCTTTCCTAAAGGGTTTACTGGGAAGGCAAAATCGTACACCGACCATTGTCATTGTCTGGTCTATTCTCCTTGCTTCCATTTTCTCATTGCTCTGGGTGCGAATCGATCCATTTACCTCAGCCTCGACAAAGGCTGCTAACGGTCAATGTGGTATCAATTGCTAG 3354 44.87 MNTRHVINYQNIRKSRGLLSRVEPFRAQWKPVDSVMEANGGLVAGSYKRNELVRIRHDSDSGPKPLKNLNSQTCQICGDTVGLTASGDVFVACNECAFPVCRPCYEYERKDGNQSCPQCKTRYKRHKGSPRVDGDDDEDDVDDIENEFNYVQGSGKTKRQWHGEDVELSTSARHESQQPIPLLTNGQSVSGEIPCATPDNQSVRTTSGPLGPPEKHMQSHPYVDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKNIMQMTSRYTEGKGDMEGTGSNGEELQMADDARQPLSRVVPIPSSHLTPYRVVIILRLIILGFFLQYRLTHPVKDAYPLWLTSVICEVWFALSWLLDQFPKWSPVNRETFLERLALRYDREGEPSQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIKPSFVKERRAMKREYEEFKIRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGLQGPVYVGTGCCFNRQALYGYDPVLTEADLEPNIIIKSCCGSRKKGRNKKYIDKKRAAKRTESTIPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERIAYINTIVYPITSIPLIAYCMLPAFCLLTGKFIIPEISNFASMWFILLFVSIFATGILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDDDGDFAELYVFKWTSLLIPPTTVLIMNMVGIVAGVSYAINSGYQSWGPLFGKLFFALWVIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFTSASTKAANGQCGINC 1117
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28461586 28467789 - CcPI632755_05g019360.1 Cco05g1936 179564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1936 1117 MobiDBLite consensus disorder prediction 195 228 - -
Cco05g1936 1117 FunFam Cellulose synthase 56 147 - -
Cco05g1936 1117 SUPERFAMILY Nucleotide-diphospho-sugar transferases 411 685 IPR029044 -
Cco05g1936 1117 CDD mRING-HC-C4C4_CesA 72 122 - -
Cco05g1936 1117 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 147 IPR013083 -
Cco05g1936 1117 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 381 481 IPR029044 -
Cco05g1936 1117 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 551 688 IPR029044 -
Cco05g1936 1117 Pfam Zinc-binding RING-finger 64 141 IPR027934 -
Cco05g1936 1117 SUPERFAMILY RING/U-box 57 146 - -
Cco05g1936 1117 Coils Coil 491 511 - -
Cco05g1936 1117 ProSiteProfiles Zinc finger RING-type profile. 74 120 IPR001841 -
Cco05g1936 1117 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 301 1086 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Cco05g1936 1117 FunFam Cellulose synthase 510 684 - -
Cco05g1936 1117 Pfam Cellulose synthase 393 1108 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1936 Cco-Chr5:28461586 Cco09g0397 Cco-Chr9:3610243 0.00E+00 dispersed
Cco05g1936 Cco-Chr5:28461586 Cco10g1101 Cco-Chr10:23307788 7.00E-240 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1936 K10999 - csv:101205724 2197.93