Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco05g1944 | ATGTCGAAGCAGAAGTCGAAGAAGATGGGATTATTAGGGAGATCAATGTGCGGGAGAGAGCAAGAGCGAGAGATAGAGCAATTATCGAGAGACGACGGCAGCCAATACAGTCTCACCGGCGGAATCCTTCCGCCGCTGGGCGTAAATGGGCGAAATAAAGGAAGAGTCAAACTCCGTAGTCATACAATTTCGCCATTCGATTACAATTACAGACTTTGGGAAACGTTTTTGATATTTCTAGTACTGTACACCGCCTGGGTTTGTCCGTTTGAGTTCGGGTTCATACCTTCACCGCACGGAGCTCTTGCTGTGATCGATAACGTTGTAAATGGAATATTCGCCATTGATATAGTTTTGACCTTCTTCGTGGCATATTTGGACAAAACTACTTACCTGCTCGTGGATGATCGGAAGCTGATTGCTCTGCGATATGCGAAAACCTGGTTGATTTTCGACGTTGTGTCAATTATTCCGTCGGAAATGGCTCGTGCTATTCTTCCTCCTTCTCTTCAAACTTATGGCTACTTCAATATGCTTCGTCTATGGCGTCTTCGAAGAGTGAGTTCCATGTTCGCCAGGTTGGAAAAGGATAGGAACTTCAACTATTTCTGGGTTCGATGCGCAAAGCTTATATTTGTGTGTCTATTCACGGTTCATTTTGCTGGGTGCTGCTTCTATCTAATGGCTGCAAACTATCCAGACCCAAAAAGGACATGGTTAGCCTTATCCATCGAAGATTTTCACAACGCAAGTTTGCGAGTGCGTTATGTGACTTCCATTTACTGGTCAATTGTCACGATCACAACCACTGGCTATGGCGATTTGCATCCGGTAAATGATCAAGAAATGACTTATGGCATCTGTTACCTCTTCTTTATTCTCGGCTTGCAAGCTTACCTGATTGGAAATATGACTAACTTGGTCGTCCATGGCACCGGCCGAACCAGGAAATTTAGGGACACAATTCAAGCTGCCTCGAATTTTGCCCATAGAAATCAACTACCTGTTCGTCTTCAAGAACAGATGCTCGCTCATCTATGTTTGAAATTCAGAACTGATTCAGAGGGATTACAACAACAAGAGACAGTTGATTCTCTTCCGAAAGCCATCAGATCTGGCATCGCTCACCATCTCTTCTATTCACTTGTTGATAGTGCTTATTTGTTTCATGGAGTGTCAACAGACTTGATTTTTCAACTGGTTACTGAAATGAAGGCTGAGTACTTCCCCCCCAAAGAGGATATCATATTGGAGAATGAAGCACCAACAGATTTTTATATAGTTGTCACTGGCACTGCGGATCTTATTATACAAAGAAACGGAATGGAAGAGATTGTTGGCGAAGCAAAGATGGGAGATGTCATCGGCGAGATAGGTGTGCTTTGTTATCAACCACAATTGTTTACAGTTCGAACCAGCCGTTTGAGTCAATTGCTGCGCTTGAATCGCTCCTCGTTTTTTAACTTGGTGCAAGCAAGTGTTGGGGATGGGACAATAATAATGAACAATCTCCTTAAGCACCTGAAGGAGATAAAAGACCCCGTGATGGAGGACATTCTACAAGAAACAGAACAGACATTGACTAAGGCAGGAATGGAAATGCCTCTCAATTTATGCTATGCCGCAGACAGTGGCGATGATATATTGTTGCATCAATTGCTAAAGCGGGGTTCGAATCCAAATGAAGTAGATGGCGGGAAGACAGCACTTCATACTGCAGCAGCTAAAGGAAACGAACACTGCGTAGCACTACTCCTAGAGTATGGGGCAGACCCGAACAGAAGAGACTTTGATGGAAACGTACCCCTGTGGCAAGCAATACAAGGGAAGCACGAGTCTATAGTCAAGCTTCTAATGGACAACGGTGCCAATATTTCTTCAGGCGACGTTGCCCAGTTTGCTTGCACTGCTGCAGAGCAAAACAGCATAGATATGCTCAAATCCATCATCCAATGTGGTGGAGACGTAACGCTGCCAAGAAGCAACGGGACAACAGCTCTTCACATGGCAGTATGTGAAGGAAACAGTGAAACAGTGAAGTTTCTTTTAGATCAGGGGGCTGACATTGATAAGGCAGATGTTCATGGATGGACTCCTCGAGGATTGGCAGATCATCAAGGCCATGAAGAGATAAAAGAACTATTCTCTGTCAAGCAAGCTGTGAATATATCGTCTATTGTCCATATTCCACAAAATCCTGAATCAAATTACCTACGGAAGTACCAGAGCGAATCAAACATGCCACCACGGTTTTCCCAAGACTCATGCACGACTCCTGTTCGAGAATCAAATTGTTCTGATATGCCTCCTAGAAGGCGAAGGAGCAATAATTATCGAAACTCACTAGTTGGGTTCATGACAACTAACAATAGAGGTGAAAGGGACATTTTACAATCTGCATCACTCGGTTTTAACAATAGCCGAAGCATGCGAACGACTTACCAGGCAAGAATTACTCTCAGTTGCCCTGAAACTGGACAGGCTACTGGAAAGCTAGTGTTTTTACCCAAATCTATCCAAGAACTACTTGAAATAGGTTCCAAAAAATTTGGGATCTCCGTAGCAAAGATTTTAACTCAAGAAGGAGCTGAAGTTGAGGATACTGACCTTATCAGAGACGGCGATCACCTCATACTTGTTGGTGATGCTGGTGCTCCCCAGTAG | 2664 | 43.96 | MSKQKSKKMGLLGRSMCGREQEREIEQLSRDDGSQYSLTGGILPPLGVNGRNKGRVKLRSHTISPFDYNYRLWETFLIFLVLYTAWVCPFEFGFIPSPHGALAVIDNVVNGIFAIDIVLTFFVAYLDKTTYLLVDDRKLIALRYAKTWLIFDVVSIIPSEMARAILPPSLQTYGYFNMLRLWRLRRVSSMFARLEKDRNFNYFWVRCAKLIFVCLFTVHFAGCCFYLMAANYPDPKRTWLALSIEDFHNASLRVRYVTSIYWSIVTITTTGYGDLHPVNDQEMTYGICYLFFILGLQAYLIGNMTNLVVHGTGRTRKFRDTIQAASNFAHRNQLPVRLQEQMLAHLCLKFRTDSEGLQQQETVDSLPKAIRSGIAHHLFYSLVDSAYLFHGVSTDLIFQLVTEMKAEYFPPKEDIILENEAPTDFYIVVTGTADLIIQRNGMEEIVGEAKMGDVIGEIGVLCYQPQLFTVRTSRLSQLLRLNRSSFFNLVQASVGDGTIIMNNLLKHLKEIKDPVMEDILQETEQTLTKAGMEMPLNLCYAADSGDDILLHQLLKRGSNPNEVDGGKTALHTAAAKGNEHCVALLLEYGADPNRRDFDGNVPLWQAIQGKHESIVKLLMDNGANISSGDVAQFACTAAEQNSIDMLKSIIQCGGDVTLPRSNGTTALHMAVCEGNSETVKFLLDQGADIDKADVHGWTPRGLADHQGHEEIKELFSVKQAVNISSIVHIPQNPESNYLRKYQSESNMPPRFSQDSCTTPVRESNCSDMPPRRRRSNNYRNSLVGFMTTNNRGERDILQSASLGFNNSRSMRTTYQARITLSCPETGQATGKLVFLPKSIQELLEIGSKKFGISVAKILTQEGAEVEDTDLIRDGDHLILVGDAGAPQ | 887 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 28513218 | 28520756 | + | CcPI632755_05g019440.1 | Cco05g1944 | 179572 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco05g1944 | 887 | ProSiteProfiles | Ankyrin repeat region circular profile. | 598 | 629 | - | - | |
| Cco05g1944 | 887 | PANTHER | POTASSIUM CHANNEL AKT1 | 25 | 878 | IPR045319 | GO:0005249(InterPro)|GO:0006813(InterPro) | |
| Cco05g1944 | 887 | CDD | CAP_ED | 388 | 491 | IPR000595 | - | |
| Cco05g1944 | 887 | FunFam | Potassium channel KAT3 | 72 | 310 | - | - | |
| Cco05g1944 | 887 | Gene3D | Jelly Rolls | 356 | 528 | IPR014710 | - | |
| Cco05g1944 | 887 | ProSiteProfiles | Ankyrin repeat profile. | 662 | 694 | IPR002110 | GO:0005515(InterPro) | |
| Cco05g1944 | 887 | MobiDBLite | consensus disorder prediction | 744 | 776 | - | - | |
| Cco05g1944 | 887 | Pfam | KHA, dimerisation domain of potassium ion channel | 817 | 879 | IPR021789 | - | |
| Cco05g1944 | 887 | SMART | ANK_2a | 533 | 562 | IPR002110 | GO:0005515(InterPro) | |
| Cco05g1944 | 887 | SMART | ANK_2a | 565 | 594 | IPR002110 | GO:0005515(InterPro) | |
| Cco05g1944 | 887 | SMART | ANK_2a | 598 | 627 | IPR002110 | GO:0005515(InterPro) | |
| Cco05g1944 | 887 | SMART | ANK_2a | 629 | 658 | IPR002110 | GO:0005515(InterPro) | |
| Cco05g1944 | 887 | SMART | ANK_2a | 662 | 691 | IPR002110 | GO:0005515(InterPro) | |
| Cco05g1944 | 887 | ProSiteProfiles | Ankyrin repeat region circular profile. | 662 | 693 | - | - | |
| Cco05g1944 | 887 | FunFam | Potassium channel KAT2 | 376 | 512 | - | - | |
| Cco05g1944 | 887 | Gene3D | - | 534 | 717 | IPR036770 | - | |
| Cco05g1944 | 887 | SUPERFAMILY | Ankyrin repeat | 500 | 715 | IPR036770 | - | |
| Cco05g1944 | 887 | ProSiteProfiles | KHA domain profile. | 817 | 887 | IPR021789 | - | |
| Cco05g1944 | 887 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 388 | 490 | IPR000595 | - | |
| Cco05g1944 | 887 | SUPERFAMILY | cAMP-binding domain-like | 314 | 508 | IPR018490 | - | |
| Cco05g1944 | 887 | ProSiteProfiles | Ankyrin repeat profile. | 598 | 630 | IPR002110 | GO:0005515(InterPro) | |
| Cco05g1944 | 887 | ProSiteProfiles | Ankyrin repeat region circular profile. | 565 | 596 | - | - | |
| Cco05g1944 | 887 | PRINTS | EAG/ELK/ERG potassium channel family signature | 256 | 273 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cco05g1944 | 887 | PRINTS | EAG/ELK/ERG potassium channel family signature | 300 | 309 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cco05g1944 | 887 | PRINTS | EAG/ELK/ERG potassium channel family signature | 106 | 116 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cco05g1944 | 887 | PRINTS | EAG/ELK/ERG potassium channel family signature | 83 | 90 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cco05g1944 | 887 | PRINTS | EAG/ELK/ERG potassium channel family signature | 117 | 126 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cco05g1944 | 887 | SMART | cnmp_10 | 388 | 505 | IPR000595 | - | |
| Cco05g1944 | 887 | MobiDBLite | consensus disorder prediction | 744 | 764 | - | - | |
| Cco05g1944 | 887 | ProSiteProfiles | Ankyrin repeat profile. | 565 | 597 | IPR002110 | GO:0005515(InterPro) | |
| Cco05g1944 | 887 | Gene3D | - | 71 | 309 | - | - | |
| Cco05g1944 | 887 | Pfam | Ion transport protein | 70 | 314 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cco05g1944 | 887 | SUPERFAMILY | Voltage-gated potassium channels | 65 | 309 | - | - | |
| Cco05g1944 | 887 | Pfam | Cyclic nucleotide-binding domain | 407 | 492 | IPR000595 | - | |
| Cco05g1944 | 887 | PRINTS | Ankyrin repeat signature | 566 | 581 | IPR002110 | GO:0005515(InterPro) | |
| Cco05g1944 | 887 | PRINTS | Ankyrin repeat signature | 678 | 692 | IPR002110 | GO:0005515(InterPro) | |
| Cco05g1944 | 887 | Pfam | Ankyrin repeats (3 copies) | 636 | 714 | IPR002110 | GO:0005515(InterPro) | |
| Cco05g1944 | 887 | Pfam | Ankyrin repeats (3 copies) | 538 | 627 | IPR002110 | GO:0005515(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco05g1944 | Cco-Chr5:28513218 | Cco06g1242 | Cco-Chr6:22383764 | 1.30E-305 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco05g1944 | K21867 | - | csv:101217334 | 1461.05 |