Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1950 ATGTCCGCCTCGAACATGGCGGCATCTCTAAGCTCTTGGTCCCACGCGCTCGTCAGAATCTCCCCTTACACCTTCTCCGCCATCGGCATTGTCATAGCCATCGGCGTCTCCGTCCTCGGAGCCGCCTGGGGGATCTACATAACCGGAAGCAGTTTGATCGGTGCTGCAATCAAAGCTCCGCGTATTACCTCGAAGAATTTAATTAGTGTAATTTTCTGTGAAGCAGTGGCCATATATGGTGTCATTGTAGCCATCATTCTACAAACAAAACTGGAGACTGTTTCACCATCTCAAATTTATGCTCCTGAGTCTCTAAGAGCAGGATATTCAATTTTTGCTTCTGGGATTATCGTCGGCTTTGCCAATCTTGTTTGCGGGTTGTGTGTAGGGATTATTGGCAGCAGTTGTGCATTATCTGATGCCCAAAACTCATCTCTTTTTGTAAAGATTCTCGTGATCGAGATTTTTGGGAGCGCGCTTGGGTTATTTGGTATAATTGTAGGAATAATCATGTCTGCTCAAGCTACATGGCCTGCAAAGGCAGTTTAG 549 46.27 MSASNMAASLSSWSHALVRISPYTFSAIGIVIAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLETVSPSQIYAPESLRAGYSIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGIIVGIIMSAQATWPAKAV 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28559093 28560457 + CcPI632755_05g019500.1 Cco05g1950 179578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1950 182 CDD ATP-synt_Vo_c_ATP6F_rpt1 25 87 - -
Cco05g1950 182 SUPERFAMILY F1F0 ATP synthase subunit C 104 172 IPR035921 -
Cco05g1950 182 FunFam V-type proton ATPase proteolipid subunit 23 178 - -
Cco05g1950 182 Pfam ATP synthase subunit C 28 87 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Cco05g1950 182 Pfam ATP synthase subunit C 112 171 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Cco05g1950 182 Gene3D - 23 178 IPR035921 -
Cco05g1950 182 CDD ATP-synt_Vo_c_ATP6F_rpt2 107 171 - -
Cco05g1950 182 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 11 175 - GO:0016021(PANTHER)
Cco05g1950 182 SUPERFAMILY F1F0 ATP synthase subunit C 21 90 IPR035921 -
Cco05g1950 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 67 91 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cco05g1950 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 123 149 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cco05g1950 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 150 173 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cco05g1950 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 41 65 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1950 Cco-Chr5:28559093 Cco08g1462 Cco-Chr8:26488700 3.20E-78 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1950 K03661 - csv:101205012 305.834