Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco05g1950 | ATGTCCGCCTCGAACATGGCGGCATCTCTAAGCTCTTGGTCCCACGCGCTCGTCAGAATCTCCCCTTACACCTTCTCCGCCATCGGCATTGTCATAGCCATCGGCGTCTCCGTCCTCGGAGCCGCCTGGGGGATCTACATAACCGGAAGCAGTTTGATCGGTGCTGCAATCAAAGCTCCGCGTATTACCTCGAAGAATTTAATTAGTGTAATTTTCTGTGAAGCAGTGGCCATATATGGTGTCATTGTAGCCATCATTCTACAAACAAAACTGGAGACTGTTTCACCATCTCAAATTTATGCTCCTGAGTCTCTAAGAGCAGGATATTCAATTTTTGCTTCTGGGATTATCGTCGGCTTTGCCAATCTTGTTTGCGGGTTGTGTGTAGGGATTATTGGCAGCAGTTGTGCATTATCTGATGCCCAAAACTCATCTCTTTTTGTAAAGATTCTCGTGATCGAGATTTTTGGGAGCGCGCTTGGGTTATTTGGTATAATTGTAGGAATAATCATGTCTGCTCAAGCTACATGGCCTGCAAAGGCAGTTTAG | 549 | 46.27 | MSASNMAASLSSWSHALVRISPYTFSAIGIVIAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLETVSPSQIYAPESLRAGYSIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGIIVGIIMSAQATWPAKAV | 182 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 28559093 | 28560457 | + | CcPI632755_05g019500.1 | Cco05g1950 | 179578 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco05g1950 | 182 | CDD | ATP-synt_Vo_c_ATP6F_rpt1 | 25 | 87 | - | - | |
| Cco05g1950 | 182 | SUPERFAMILY | F1F0 ATP synthase subunit C | 104 | 172 | IPR035921 | - | |
| Cco05g1950 | 182 | FunFam | V-type proton ATPase proteolipid subunit | 23 | 178 | - | - | |
| Cco05g1950 | 182 | Pfam | ATP synthase subunit C | 28 | 87 | IPR002379 | GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro) | |
| Cco05g1950 | 182 | Pfam | ATP synthase subunit C | 112 | 171 | IPR002379 | GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro) | |
| Cco05g1950 | 182 | Gene3D | - | 23 | 178 | IPR035921 | - | |
| Cco05g1950 | 182 | CDD | ATP-synt_Vo_c_ATP6F_rpt2 | 107 | 171 | - | - | |
| Cco05g1950 | 182 | PANTHER | V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT | 11 | 175 | - | GO:0016021(PANTHER) | |
| Cco05g1950 | 182 | SUPERFAMILY | F1F0 ATP synthase subunit C | 21 | 90 | IPR035921 | - | |
| Cco05g1950 | 182 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 67 | 91 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Cco05g1950 | 182 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 123 | 149 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Cco05g1950 | 182 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 150 | 173 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Cco05g1950 | 182 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 41 | 65 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco05g1950 | K03661 | - | - | csv:101205012 | 305.834 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco05g1950 | Cco-Chr5:28559093 | Cco08g1462 | Cco-Chr8:26488700 | 3.20E-78 | dispersed |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi4g414 | . | . | Bda01g00727 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cla05g01759 | Cam05g1873 | Cec05g1886 | Cco05g1950 | Clacu05g1865 | Cmu05g1746 | Cre05g1876 | . | . | . | Cone20ag0657 | . | . | Chy04g00346 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cpe02g00466 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cme04g00385 |
Syn-Families
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Cco08g1842 | . | 193 | 1190 | Primary Pumps ATPases(2) | AT1G10130 | 83.0 | 0.0e+00 | 1625.1 | |
| Cco02g2230 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 81.6 | 0.0e+00 | 1343.6 | |
| Cco08g1644 | . | 1 | 802 | Primary Pumps ATPases(2) | AT2G28520 | 62.9 | 2.3e-296 | 1015.0 | |
| Cco02g0512 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 62.7 | 1.7e-291 | 998.8 | |
| Cco02g0512 | . | 6 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 75.6 | 0.0e+00 | 1231.5 | |
| Cco08g1644 | . | 1 | 807 | Primary Pumps ATPases(2) | AT2G21410 | 72.6 | 0.0e+00 | 1184.9 | |
| Cco02g2230 | . | 9 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 62.6 | 1.4e-298 | 1022.3 | |
| Cco02g0512 | . | 8 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 76.9 | 0.0e+00 | 1234.6 | |
| Cco08g1644 | . | 1 | 807 | Primary Pumps ATPases(2) | AT4G39080 | 73.4 | 0.0e+00 | 1182.9 | |
| Cco02g2230 | . | 9 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 63.5 | 1.6e-297 | 1018.8 | |
| Cco08g1616 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Cco08g1617 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Cco11g1626 | . | 68 | 205 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Cco08g1616 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 1.4e-66 | 249.6 | |
| Cco08g1617 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 1.4e-66 | 249.6 | |
| Cco11g1626 | . | 42 | 205 | Primary Pumps ATPases(2) | AT1G75630 | 80.3 | 3.1e-66 | 248.4 | |
| Cco08g1616 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.4e-74 | 274.2 | |
| Cco08g1617 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.4e-74 | 274.2 | |
| Cco11g1626 | . | 43 | 205 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.4e-74 | 274.2 | |
| Cco11g1626 | . | 41 | 162 | Primary Pumps ATPases(2) | AT1G19910 | 99.2 | 5.4e-53 | 203.8 | |
| Cco08g1616 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.2e-52 | 202.6 | |
| Cco08g1617 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.2e-52 | 202.6 | |
| Cco08g1462 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 84.2 | 3.1e-70 | 261.9 | |
| Cco05g1950 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 81.9 | 5.3e-70 | 261.2 | |
| Cco08g1616 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 4.0e-60 | 227.6 | |
| Cco08g1617 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 4.0e-60 | 227.6 | |
| Cco11g1626 | . | 68 | 205 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 4.0e-60 | 227.6 | |
| Cco05g1950 | . | 11 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 77.0 | 1.4e-72 | 269.6 | |
| Cco08g1462 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 73.3 | 1.5e-71 | 266.2 | |
| Cco03g0186 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07810 | 80.6 | 0.0e+00 | 1672.1 | |
| Cco03g0186 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07670 | 80.3 | 0.0e+00 | 1671.8 | |
| Cco08g1842 | . | 193 | 1190 | Primary Pumps ATPases(2) | AT1G10130 | 83.0 | 0.0e+00 | 1625.1 | |
| Cco03g0186 | . | 22 | 1046 | Primary Pumps ATPases(2) | AT4G00900 | 65.7 | 0.0e+00 | 1320.4 | |
| Cco03g1782 | . | 1 | 126 | Primary Pumps ATPases(2) | AT4G02620 | 84.1 | 3.8e-57 | 217.6 | |
| Cco02g0431 | . | 6 | 488 | Primary Pumps ATPases(2) | AT1G76030 | 96.1 | 4.5e-268 | 920.2 | |
| Cco10g2018 | . | 92 | 199 | Primary Pumps ATPases(2) | AT3G01390 | 80.6 | 3.8e-37 | 151.0 | |
| Cco01g0853 | . | 1 | 376 | Primary Pumps ATPases(2) | AT1G12840 | 83.2 | 3.2e-181 | 631.3 | |
| Cco09g2423 | . | 1020 | 1280 | Primary Pumps ATPases(2) | AT3G58730 | 82.4 | 1.0e-117 | 419.9 | |
| Cco10g1623 | . | 3 | 454 | Primary Pumps ATPases(2) | AT3G42050 | 79.6 | 1.5e-206 | 715.7 | |
| Cco08g1616 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.4e-74 | 274.2 | |
| Cco08g1617 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.4e-74 | 274.2 | |
| Cco11g1626 | . | 43 | 205 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.4e-74 | 274.2 | |
| Cco02g0431 | . | 1 | 488 | Primary Pumps ATPases(2) | AT4G38510 | 95.9 | 2.9e-270 | 927.5 | |
| Cco05g1602 | . | 1 | 182 | Primary Pumps ATPases(2) | AT1G64200 | 74.1 | 1.1e-65 | 246.5 | |
| Cco02g0431 | . | 9 | 488 | Primary Pumps ATPases(2) | AT1G20260 | 95.8 | 9.4e-266 | 912.5 | |
| Cco02g2230 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 81.6 | 0.0e+00 | 1343.6 | |
| Cco08g1644 | . | 1 | 802 | Primary Pumps ATPases(2) | AT2G28520 | 62.9 | 2.3e-296 | 1015.0 | |
| Cco02g0512 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 62.7 | 1.7e-291 | 998.8 | |
| Cco10g1485 | . | 51 | 401 | Primary Pumps ATPases(2) | AT3G28715 | 92.0 | 6.3e-192 | 666.8 | |
| Cco05g1602 | . | 1 | 229 | Primary Pumps ATPases(2) | AT4G11150 | 77.4 | 7.2e-91 | 330.5 | |
| Cco09g0164 | . | 1 | 623 | Primary Pumps ATPases(2) | AT1G78900 | 93.3 | 0.0e+00 | 1171.4 | |
| Cco02g0431 | . | 6 | 488 | Primary Pumps ATPases(2) | AT1G76030 | 96.1 | 4.5e-268 | 920.2 | |
| Cco02g0431 | . | 1 | 488 | Primary Pumps ATPases(2) | AT4G38510 | 95.9 | 2.9e-270 | 927.5 | |
| Cco02g0431 | . | 9 | 488 | Primary Pumps ATPases(2) | AT1G20260 | 95.8 | 9.4e-266 | 912.5 | |
| Cco01g0853 | . | 1 | 376 | Primary Pumps ATPases(2) | AT1G12840 | 83.2 | 3.2e-181 | 631.3 | |
| Cco09g2423 | . | 1020 | 1280 | Primary Pumps ATPases(2) | AT3G58730 | 82.4 | 1.0e-117 | 419.9 | |
| Cco05g1602 | . | 1 | 229 | Primary Pumps ATPases(2) | AT4G11150 | 77.4 | 7.2e-91 | 330.5 | |
| Cco05g1602 | . | 1 | 223 | Primary Pumps ATPases(2) | AT3G08560 | 69.0 | 3.9e-76 | 281.6 | |
| Cco05g1602 | . | 1 | 182 | Primary Pumps ATPases(2) | AT1G64200 | 74.1 | 1.1e-65 | 246.5 | |
| Cco03g1782 | . | 1 | 126 | Primary Pumps ATPases(2) | AT4G02620 | 84.1 | 3.8e-57 | 217.6 | |
| Cco10g2018 | . | 92 | 199 | Primary Pumps ATPases(2) | AT3G01390 | 80.6 | 3.8e-37 | 151.0 | |
| Cco10g1623 | . | 3 | 454 | Primary Pumps ATPases(2) | AT3G42050 | 79.6 | 1.5e-206 | 715.7 | |
| Cco02g2230 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 81.6 | 0.0e+00 | 1343.6 | |
| Cco08g1644 | . | 1 | 802 | Primary Pumps ATPases(2) | AT2G28520 | 62.9 | 2.3e-296 | 1015.0 | |
| Cco02g0512 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 62.7 | 1.7e-291 | 998.8 | |
| Cco02g0512 | . | 6 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 75.6 | 0.0e+00 | 1231.5 | |
| Cco08g1644 | . | 1 | 807 | Primary Pumps ATPases(2) | AT2G21410 | 72.6 | 0.0e+00 | 1184.9 | |
| Cco02g2230 | . | 9 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 62.6 | 1.4e-298 | 1022.3 | |
| Cco02g0512 | . | 8 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 76.9 | 0.0e+00 | 1234.6 | |
| Cco08g1644 | . | 1 | 807 | Primary Pumps ATPases(2) | AT4G39080 | 73.4 | 0.0e+00 | 1182.9 | |
| Cco02g2230 | . | 9 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 63.5 | 1.6e-297 | 1018.8 | |
| Cco08g1616 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Cco08g1617 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Cco11g1626 | . | 68 | 205 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Cco11g1626 | . | 41 | 162 | Primary Pumps ATPases(2) | AT1G19910 | 99.2 | 5.4e-53 | 203.8 | |
| Cco08g1616 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.2e-52 | 202.6 | |
| Cco08g1617 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.2e-52 | 202.6 | |
| Cco08g1616 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 4.0e-60 | 227.6 | |
| Cco08g1617 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 4.0e-60 | 227.6 | |
| Cco11g1626 | . | 68 | 205 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 4.0e-60 | 227.6 | |
| Cco08g1616 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 1.4e-66 | 249.6 | |
| Cco08g1617 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 1.4e-66 | 249.6 | |
| Cco11g1626 | . | 42 | 205 | Primary Pumps ATPases(2) | AT1G75630 | 80.3 | 3.1e-66 | 248.4 | |
| Cco08g1616 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.4e-74 | 274.2 | |
| Cco08g1617 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.4e-74 | 274.2 | |
| Cco11g1626 | . | 43 | 205 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.4e-74 | 274.2 | |
| Cco05g1950 | . | 11 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 77.0 | 1.4e-72 | 269.6 | |
| Cco08g1462 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 73.3 | 1.5e-71 | 266.2 | |
| Cco08g1462 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 84.2 | 3.1e-70 | 261.9 | |
| Cco05g1950 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 81.9 | 5.3e-70 | 261.2 | |
| Cco10g1485 | . | 51 | 401 | Primary Pumps ATPases(2) | AT3G28710 | 94.3 | 5.5e-199 | 690.3 | |
| Cco10g1485 | . | 51 | 401 | Primary Pumps ATPases(2) | AT3G28715 | 92.0 | 6.3e-192 | 666.8 | |
| Cco03g0186 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07810 | 80.6 | 0.0e+00 | 1672.1 | |
| Cco03g0186 | . | 22 | 1046 | Primary Pumps ATPases(2) | AT4G00900 | 65.7 | 0.0e+00 | 1320.4 | |
| Cco08g1842 | . | 193 | 1190 | Primary Pumps ATPases(2) | AT1G10130 | 83.0 | 0.0e+00 | 1625.1 | |
| Cco03g0186 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07670 | 80.3 | 0.0e+00 | 1671.8 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0001947 | 2 | 4 | 2 | 3 | 2 | 2 | 3 | 2 | 2 | 2 | 2 | 2 | 3 | 2 | 2 | 3 | 2 | 2 | 3 | 2 | 2 | 1 | 1 | 2 | 1 | 2 | 2 | 3 | 3 | 2 | 66 |