Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1952 ATGAGTAGGGAAAATGTTACTGTTCAAGTTGAAGAGTGCTCCGGCAGAATCACAAGAGCACGGACGAAAGAGCTAAGCGAATCAGGAGGCATTCTATGCTCCTCAAAATCATCTGGAGTTCAGAAACATATTCTACAATCTAACTCAAAAAGAATGGCATCTGATGATATTACGATTTGTTCAATTTCTTCCAATGGTCTTCCTAATAAAAGAAGAGCAGTGCTCAAGGATGTGACTAACATTTCCACCAAAGATTTTGATAAGAATTGCAGAAATGCTTCTAACATTCAGGGTGCCAAGCCAACTAGAAGAGTTTCTGCAAAAGCTAAGGCAAATGCGCCTTTAAATGCTCCTGTAGAAATTCTAGGTGCAGAAGAAGATGCAAACACAAGACTAGCTGAGGATTTATCTAAAATAAGGGTGGTAGAATCACGAGAAGTCTCTTTAAGAGGAACTTTGGATGGAAAAGAGAGAACCGTGCAAACTACGAGTCACACCAGCAGAGAATGTGGAGTTTCAGATATGATTCTCTCTGTATCTTCAGAAGAATCTATCCCGCAGCCAAATGAAAAATTTATCGCACCTGAACAATCGGCAGCATTAAGTGATAAAGGTGTTATAGACATTGATTCGAACTCCAAATGTCTTCAATCATGCAGCATATATGCTCCAGACATATATGACAGGATACGTGTGACAGAGCTTGATCAAAGGGCCTCAACTACCTATATGGAACAGTTGCAGCAAGATATCACTGCAAACATGCGAGGAATACTGGTTGATTGGCTTGTAGAGGTGTCTGAAGAATATAATCTAGTTTCAGATACACTCTATCTCACTGTGAATGTCATCGATCGGTTTCTCTCTCAAAATTATATTGAAAAGAAGCGACTACAACTTGTTGGTGTTGCAAGCATGCTTATTGCATCAAAATATGAGGAGATATGTGCACCGCGAGTGGAAGATTTCTGCTTCATTACAGATAATACTTACACAAAAGCAGAGGTAGTAGAAATGGAGAGTGAAGTTTTGAACTTACTGCACTTTAGGCTATCTGTTCCCACTACAAAGACATTTCTGAGGAGATTTATACAATCAGCTCATGCTTCTTACAAGGTTCCTTGCATTGAACTTGAGTTTTTGGCCAATTATTTAGCTGAGTTGACTCTTGTTGAATACAGCTTCCTAAAGTTCCTTCCTTCTCTGGTCGCGGCGTCCGCCGTTTTTCTTGCGAGATGGACACTTGACCAATCGGATCATCCGTGGAATCCAACTCTAGAGCACTATACCAGTTACAACGTTTCTCAGCTGAAAACTGCTGTGCTTGCCCTCCAAGACTTGCAACTTAACACCAGTGCTTCCTCGCTAAATGCCATACGTCAGAAGTATAGACAACCGAAGTTCAAATGCGTAGCGACGTTAACAGCTACGAAATCGGTTCTATCCCTATTTTGA 1455 40.76 MSRENVTVQVEECSGRITRARTKELSESGGILCSSKSSGVQKHILQSNSKRMASDDITICSISSNGLPNKRRAVLKDVTNISTKDFDKNCRNASNIQGAKPTRRVSAKAKANAPLNAPVEILGAEEDANTRLAEDLSKIRVVESREVSLRGTLDGKERTVQTTSHTSRECGVSDMILSVSSEESIPQPNEKFIAPEQSAALSDKGVIDIDSNSKCLQSCSIYAPDIYDRIRVTELDQRASTTYMEQLQQDITANMRGILVDWLVEVSEEYNLVSDTLYLTVNVIDRFLSQNYIEKKRLQLVGVASMLIASKYEEICAPRVEDFCFITDNTYTKAEVVEMESEVLNLLHFRLSVPTTKTFLRRFIQSAHASYKVPCIELEFLANYLAELTLVEYSFLKFLPSLVAASAVFLARWTLDQSDHPWNPTLEHYTSYNVSQLKTAVLALQDLQLNTSASSLNAIRQKYRQPKFKCVATLTATKSVLSLF 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28578342 28583508 + CcPI632755_05g019520.1 Cco05g1952 179580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1952 484 SUPERFAMILY Cyclin-like 217 351 IPR036915 -
Cco05g1952 484 PANTHER CYCLINS 203 465 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cco05g1952 484 Pfam Cyclin, N-terminal domain 225 352 IPR006671 -
Cco05g1952 484 Gene3D - 225 473 - -
Cco05g1952 484 CDD CYCLIN_AtCycA-like_rpt2 354 468 - -
Cco05g1952 484 PIRSF Cyclin_A_B_D_E 33 483 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cco05g1952 484 Pfam Cyclin, C-terminal domain 354 475 IPR004367 -
Cco05g1952 484 SUPERFAMILY Cyclin-like 353 478 IPR036915 -
Cco05g1952 484 ProSitePatterns Cyclins signature. 256 287 IPR048258 -
Cco05g1952 484 SMART Cyclin_C_2 354 477 IPR004367 -
Cco05g1952 484 Gene3D - 239 352 - -
Cco05g1952 484 SMART cyclin_7 358 446 IPR013763 -
Cco05g1952 484 SMART cyclin_7 261 345 IPR013763 -
Cco05g1952 484 FunFam Mitotic cyclin 6 239 339 - -
Cco05g1952 484 FunFam Cyclin A1 341 473 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1862 Cco-Chr4:33292378 Cco05g1952 Cco-Chr5:28578342 3.90E-45 dispersed
Cco05g1952 Cco-Chr5:28578342 Cco09g0233 Cco-Chr9:2091187 3.00E-107 dispersed
Cco05g1952 Cco-Chr5:28578342 Cco08g1451 Cco-Chr8:26366876 1.70E-110 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1952 K06627 - csv:101204275 861.677