Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1953 ATGCAAAGTAGTCAATTGGACCCTATAACAAACAAAATGGAATCTTCACTATCAGAAGCTCCAAGAGGGGTTGCAGTTTCTTCCAATGATCCTTCTGTTCATCAATATTTAGTACCTAACAGGCAAATGGAACTAATGGAATCAATTTCTAGTGGCTCTCTAACTCAGAGTGGAATGCTATCACGCATGCAAAGAGGACAGGTTGATGTTAAAGCTGGGAATTTTGGACGGCAACAATTTCAAATACCTGACAATCAATTTGGAGGGACTGGAAACATGGTGAGAACTGCAGAAGGGATGCTGTCACTTCCTGTGAAGCGCAAGGCATTAATCGAGCCTTTTAACTCTCTCTCACAGCAGTCTCCATTGCATAATAAGCGAGTTGCACCCATGGAACATCGAGCATGGTTGCAACAAGCTTCTGGAATAGCCAAAAGACCTCATTTACAAATACCAAACAATGCCCCAGCTCCTGTACCGGTGCATTCCCCTGCAGGAACCAAAAGGAAGGTACAACAAGTGGAATCACATCCAACTAAAGTTGGACATCAACGTTCCACTGCTTCCAAAGGGCAGACTGCTGCACAGACTCCAACTTCCAAAATACAAAATGAGCCAACTGGATCTGTGAGATCGAAGATGAGGGAATCCTTGACTTCTGCATTAGCATTGGTATCACAGCAGCAAGACAAATCATCTAATGATGAAAAAAGTCCTCCCATAGGGGCTGAAAAATCTTCAACTCCAAAGCAGGAAAATCCTTTGTCATCTGGTCCAGCTATTGGTCATGAATCTGATGACTCGAAGAAAATCTTTTCTGAAAAATTAGATTCTGTTGGTCTTGAAGACAATGTAGGAAAGATGTTAGATAAGAGTTCACTATGTGTAAATGTTAGTGATTTAGAGACACTTAGATATGATGGACGTGTCTTTCAACCGAACAATGTTTTGTCGTATGAAGATATTTCTTTTGGGGACAACTTTTTTATTAAAGACGATCTTTTGCAAGAAAATGGTCTCTCCTGGGTGCTGGAGGCTGATTTAGGTGTAGGTGATAAAAAGGATACTCAAACTGATGAACTTCAGAAGATCGATGTGGGTGTAGCAAATCCAAACCAGGGAGAAAAACCAGTTCAGACTCCCGAGTCTTTGGCATTTAAAATTGAAGAAGAATTATTTAAATTATTTGGTGGTGTTAATAAGAAGTACAAGGAAAAAGGAAGGTCCCTTTTGTTCAACCTGAAAGACAGAAATAATCCTGAATTGAGAGAAAGGGTTATGAGTGGGGAAATTACCCCCGAAAGATTATGCTCGATGACTGCTGAGGAACTTGCTTCCAAGGAGCTCTCTGAGTGGAGAATGGCGAAGGCTGAAGAATTTGCACAAATGGTAGTTTTACCTGACTCTGAAGTTGATATTAGGCGTTTGGTAAAGAAGACACATAAAGGTGAATTCCAGGTAGAAGTTGAACAATACGATAATGCCCCCACAGATGTTTCATCTGGGGCTTCTACATTTTCTCAGAGTCAACGTAATAAGAATGAGAATGAAGATGATGGGTCTCCTGATGAACCCGAAACAGTTAAGGACGAGCAGAATATTTCTGGCCAGAAAAATGGTGCACCTGACAAGGATAATTACACCTTCACAATTCCTTCAAATGAAGGGTCCGATTTGATGCAAGGACTCATGGTTGATGATGGACTGAAGGATACAGAATTACTGCCTCCAATCGTCTCCCTGGATGAGTTCATGGAGTCCCTTGATACAGAGCCACCTTTTGATATTTTAGCTGAGGATGCTGGCAAATTGTCGCCTACTTTGGAGAAGGGTGAGTCGGAGCCTAGCTCTCGGTCAAAGGCTGCAGCTCATACTACGAAAGGTGCAACTGATGTTAGTACAGACAGTAATAGGAATAATGAGGAATCTCACACAAAAGCAGATATTGGCTCATCTTCTACCGGCCACGTGGATTTGAAACCTAGTCCTAGCGAAGCTGATGTTGATTCTAATGACAACCAAGCTGGTTTAGGAGCGTCTGACCGGAAGGACACTAGAAAATCTAGTGATAGTGATATTAAATCTGGGACAGAATCTCTTGCTAGCACATTTAAGTTGGAACATCTATGGGATGGCATTCTCCAGTACAACATTTCAACAATGACTTCAGTTGTGGGTACCTACGTAAGTGGTGAAAGGACTTCAGCGAAAGATTGGCCCGGGATTCTTGAGATTAAAGGGAGAGTCAGATTGGATGCGTTTGAGAAGTTTCTTCAAGAGCTTCCATTATCTCGGAGTCGTGCCGTTATGGTTCTTCATTTGGATGTAAAGGAGGGACGTCCTGAAAGTGAACGAGCAGATCTACGAGAGGTGGCCGAGTCGTATGTCGTGGACGAGCGAGTTGGTATAGCGGATCCTGGTTCTGGGGTTGAATTTTATTTTTGCCCTCCACATGGAAGAATTCTTGAAATGCTTGGCAGGATCCTTCTAAAGGAAACTAATGAGGCACTTAATGCACTTGAAAATGGCCTAATAGGCGTTGTTGTATGGAGAAAAACTCAATTAACGTCAATGTCACCAAACTCAACGTCACACCACAAACGCAGTTCAAAAAAGCAACATTTTAGTTCTAGAAGAGCGCAGGAGACATCAAACTTGAAACCTAATAATATTTCCCCTAAACAGACTATGTCTCATGGCTATTTCCCTGTCCTCGCCACTCCTCATCCTCCGCCTGAGGAGGATGATGCTGATGGTGACGATGACGTCCCTCCCGGATTTGGTCCTTCAACTGCTCGGGATGACGACGATCTTCCTGAATTTAACTTCTCTGGTTCTGCAAACCTTCCCGGGTTTTCTTCGCAGAACAACCACCACCGTCCTACTCCTCCAGGGCAGCCATCTAGGCCACCCTCATTCCAACCAGTTTCCCAAACTGGGTCTCGTCCAGTAGAGCAAATGCGAGAGCTTGTGCACAAATATGGACAAAACTTAGGTAAAAACGCTGCCTCCACCGTGAACTGGGGAGAAAGGAGTGGCTTCAGCTCGGTAGCCATCCAACCATGGAATGATGACGACGACGACATCCCTGAGTGGCAACCACAAGCAGTAGCAGCCTCACAACAACAAATGCCTCCTTCCTCGCACTCGCGGTTTCAGCAGCCGTCGATTAGGCCTCACTACATGGTGAACCAACAGCAGCCGCCTGTAGGGGCTCGCCCTCCTTTAAATGTAGCTCAACAAGGGACGTGGTGGGTCCCTCAACAAGGCCACAACAACAACTTACAGCCTAATAGCAATTTAAGTGGTAGTCATCATAATAGTAATGGTCAGTTTTATGGGGCATTTGGGAGATCAGCTCCTTCAAATAATAGAGGGTTTTGA 3384 43.97 MQSSQLDPITNKMESSLSEAPRGVAVSSNDPSVHQYLVPNRQMELMESISSGSLTQSGMLSRMQRGQVDVKAGNFGRQQFQIPDNQFGGTGNMVRTAEGMLSLPVKRKALIEPFNSLSQQSPLHNKRVAPMEHRAWLQQASGIAKRPHLQIPNNAPAPVPVHSPAGTKRKVQQVESHPTKVGHQRSTASKGQTAAQTPTSKIQNEPTGSVRSKMRESLTSALALVSQQQDKSSNDEKSPPIGAEKSSTPKQENPLSSGPAIGHESDDSKKIFSEKLDSVGLEDNVGKMLDKSSLCVNVSDLETLRYDGRVFQPNNVLSYEDISFGDNFFIKDDLLQENGLSWVLEADLGVGDKKDTQTDELQKIDVGVANPNQGEKPVQTPESLAFKIEEELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMSGEITPERLCSMTAEELASKELSEWRMAKAEEFAQMVVLPDSEVDIRRLVKKTHKGEFQVEVEQYDNAPTDVSSGASTFSQSQRNKNENEDDGSPDEPETVKDEQNISGQKNGAPDKDNYTFTIPSNEGSDLMQGLMVDDGLKDTELLPPIVSLDEFMESLDTEPPFDILAEDAGKLSPTLEKGESEPSSRSKAAAHTTKGATDVSTDSNRNNEESHTKADIGSSSTGHVDLKPSPSEADVDSNDNQAGLGASDRKDTRKSSDSDIKSGTESLASTFKLEHLWDGILQYNISTMTSVVGTYVSGERTSAKDWPGILEIKGRVRLDAFEKFLQELPLSRSRAVMVLHLDVKEGRPESERADLREVAESYVVDERVGIADPGSGVEFYFCPPHGRILEMLGRILLKETNEALNALENGLIGVVVWRKTQLTSMSPNSTSHHKRSSKKQHFSSRRAQETSNLKPNNISPKQTMSHGYFPVLATPHPPPEEDDADGDDDVPPGFGPSTARDDDDLPEFNFSGSANLPGFSSQNNHHRPTPPGQPSRPPSFQPVSQTGSRPVEQMRELVHKYGQNLGKNAASTVNWGERSGFSSVAIQPWNDDDDDIPEWQPQAVAASQQQMPPSSHSRFQQPSIRPHYMVNQQQPPVGARPPLNVAQQGTWWVPQQGHNNNLQPNSNLSGSHHNSNGQFYGAFGRSAPSNNRGF 1127
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28592544 28597311 + CcPI632755_05g019530.1 Cco05g1953 179581

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1953 1127 MobiDBLite consensus disorder prediction 679 693 - -
Cco05g1953 1127 MobiDBLite consensus disorder prediction 532 557 - -
Cco05g1953 1127 MobiDBLite consensus disorder prediction 1 31 - -
Cco05g1953 1127 MobiDBLite consensus disorder prediction 169 255 - -
Cco05g1953 1127 MobiDBLite consensus disorder prediction 879 897 - -
Cco05g1953 1127 MobiDBLite consensus disorder prediction 493 511 - -
Cco05g1953 1127 Pfam Transcription factor S-II (TFIIS), central domain 378 459 IPR003618 GO:0006351(InterPro)
Cco05g1953 1127 MobiDBLite consensus disorder prediction 857 982 - -
Cco05g1953 1127 MobiDBLite consensus disorder prediction 618 636 - -
Cco05g1953 1127 SUPERFAMILY Elongation factor TFIIS domain 2 377 448 IPR036575 GO:0006351(InterPro)
Cco05g1953 1127 MobiDBLite consensus disorder prediction 1087 1127 - -
Cco05g1953 1127 MobiDBLite consensus disorder prediction 148 267 - -
Cco05g1953 1127 MobiDBLite consensus disorder prediction 590 696 - -
Cco05g1953 1127 MobiDBLite consensus disorder prediction 1035 1054 - -
Cco05g1953 1127 MobiDBLite consensus disorder prediction 946 962 - -
Cco05g1953 1127 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 98 862 - -
Cco05g1953 1127 MobiDBLite consensus disorder prediction 491 563 - -
Cco05g1953 1127 CDD SPOC_TFIIS 709 850 - -
Cco05g1953 1127 Gene3D - 357 447 IPR036575 GO:0006351(InterPro)
Cco05g1953 1127 Pfam SPOC domain 705 851 IPR012921 -
Cco05g1953 1127 ProSiteProfiles TFIIS central domain profile. 353 472 IPR003618 GO:0006351(InterPro)
Cco05g1953 1127 SMART mid_6 355 455 IPR003618 GO:0006351(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1953 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g372 Blo01g01364 . Bda01g00724 . . . . Bma01g02151 . . . . . . . . . . . . . . . . Cla05g01761 Cam05g1880 Cec05g1890 Cco05g1953 Clacu05g1870 Cmu05g1752 Cre05g1880 . Cone7ag1733 . . . . Chy04g00341 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g00380
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004122 1 1 1 1 1 1 2 1 1 1 1 1 2 1 0 2 1 4 2 1 1 1 1 2 1 1 1 6 1 1 42