Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1954 ATGGGAGTAGATTATTACAATATATTGAAGGTGAACAGGAACGCCAATGACGATGATCTCAAGAAGGCGTATAGAAGGTTGGCTATGAAATGGCACCCTGATAAAAACCCCAACAACAAGAAAGAAGCTGAAACCAAATTCAAGCAGATCTCCGAGGCCTATGAGGTGTTGAGTGACCCCCAGAAGAAGGCTATTTATGATCAATATGGTGAAGAAGGGTTGAAAGATATGCCACCACCAGGCAGTGCAAGCTTCCCATTTGGAAACAGTGGCGGCAGCGAGTCGAGCGGGTTTAATCCGAGGAATGCAGAAGATATTTTTGCAGAATTTTTTGGGAGCAGCCCTTTTGGGTTTGGTTCATCAGGACCAGGGAAGTCTATGAGGTACCAGTCAGAGGGAGGAGTTTTTGGGGGATTTGGTGGAAGTGAAAACATTTTCAGAACATATTGTGAAAATGTAACACCAAAGAAACCTCCACCAGTTGAGAGCAAATTGCCCTGCACTCTTGAGGAGCTGTATTCAGGATCAACAAGGAAAATGAAGATTTCAAGAACCGTAGTTGATGCAAACGGACGGCAAATCCCCGAGACAGAGATATTGACCATCGACGTGAAACCTGGTTGGAAGAAAGGAACCAAAATCACCTTTCCAGATAAAGGAAATGAACAACCAAATCAACTGCCCGCAGATCTGGTATTTGTTATTGATGAGAAGCCTCATGATGTTTTCAAAAGAGATGGTAATGATATAACTATGAACCATAGGGTAACATTAGCAGAGGCATTGGGTGGAACCACTATAAATATTACCACACTAGACGGTCGTAACTTATCAATCCCTGTAATAGACATTGTTAGCCCAGGATACGAGCTCGTGATCGCCAGAGAAGGAATGCCAATCGTAAGAGAGCCTGGTAACCGCGGTGATTTGAAGATCAAATTCGACGTGAAATTCCCAACAAGATTAACCCCCGAGCAACGAGCAGGACTCAAGCGTGCTCTGGGAGGTTGA 1011 44.21 MGVDYYNILKVNRNANDDDLKKAYRRLAMKWHPDKNPNNKKEAETKFKQISEAYEVLSDPQKKAIYDQYGEEGLKDMPPPGSASFPFGNSGGSESSGFNPRNAEDIFAEFFGSSPFGFGSSGPGKSMRYQSEGGVFGGFGGSENIFRTYCENVTPKKPPPVESKLPCTLEELYSGSTRKMKISRTVVDANGRQIPETEILTIDVKPGWKKGTKITFPDKGNEQPNQLPADLVFVIDEKPHDVFKRDGNDITMNHRVTLAEALGGTTINITTLDGRNLSIPVIDIVSPGYELVIAREGMPIVREPGNRGDLKIKFDVKFPTRLTPEQRAGLKRALGG 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28597982 28600022 - CcPI632755_05g019540.1 Cco05g1954 179582

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1954 336 FunFam Dnaj homolog subfamily b member 156 238 - -
Cco05g1954 336 Pfam DnaJ C terminal domain 161 319 IPR002939 -
Cco05g1954 336 SMART dnaj_3 3 62 IPR001623 -
Cco05g1954 336 Gene3D DnaJ domain 3 121 IPR036869 -
Cco05g1954 336 MobiDBLite consensus disorder prediction 73 98 - -
Cco05g1954 336 Pfam DnaJ domain 4 67 IPR001623 -
Cco05g1954 336 Gene3D - 160 238 - -
Cco05g1954 336 CDD DnaJ 4 59 IPR001623 -
Cco05g1954 336 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Cco05g1954 336 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Cco05g1954 336 FunFam DNAJ heat shock family protein 239 334 - -
Cco05g1954 336 CDD DnaJ_C 159 322 - -
Cco05g1954 336 Gene3D - 239 335 - -
Cco05g1954 336 PRINTS DnaJ domain signature 24 39 IPR001623 -
Cco05g1954 336 PRINTS DnaJ domain signature 62 81 IPR001623 -
Cco05g1954 336 PRINTS DnaJ domain signature 6 24 IPR001623 -
Cco05g1954 336 PRINTS DnaJ domain signature 42 62 IPR001623 -
Cco05g1954 336 SUPERFAMILY HSP40/DnaJ peptide-binding domain 160 241 IPR008971 GO:0006457(InterPro)|GO:0051082(InterPro)
Cco05g1954 336 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 335 IPR051339 GO:0005829(PANTHER)|GO:0051082(PANTHER)|GO:0051085(PANTHER)|GO:0051087(PANTHER)
Cco05g1954 336 FunFam DNAJ heat shock family protein 3 123 - -
Cco05g1954 336 SUPERFAMILY Chaperone J-domain 3 119 IPR036869 -
Cco05g1954 336 SUPERFAMILY HSP40/DnaJ peptide-binding domain 242 328 IPR008971 GO:0006457(InterPro)|GO:0051082(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1954 K09510 - - csv:101204033 619.002
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g2110 Cco-Chr4:34971890 Cco05g1954 Cco-Chr5:28597982 2.20E-115 dispersed
Cco05g1954 Cco-Chr5:28597982 Cco05g2739 Cco-Chr5:35271672 1.80E-106 dispersed
Cco09g1532 Cco-Chr9:21681126 Cco05g1954 Cco-Chr5:28597982 1.60E-45 transposed
Cco05g1954 Cco-Chr5:28597982 Cco06g1272 Cco-Chr6:22794142 2.00E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g327 Blo01g01767 . . . . Bpe02g00177 . . . . . . . . . . . Bhi04g00826 . . . . . Lcy13g1391 Cla05g01762 Cam05g1881 Cec05g1891 Cco05g1954 Clacu05g1871 Cmu05g1753 Cre05g1881 . . . Cone20ag0610 . . Chy04g00260 . . . . . . . . . . . . . . . . . Cpe02g00377 Bhi09g02424 . . . . . . . . . . . . . . . . Cme04g00291
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007809 1 1 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 36