Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1967 ATGTCGACACCAGTGTCCGAAACAAGGTCGCCGATACCTTTGCTGTTCCGGCGGCACTCAAGTGGCGAAATAAAGAACTTGACGTCGGTTTCCAGCAGCCTCTTGCCGGCGTTTGGAACAGTTGTCAACGATGGATATTCGCACCTGAACAAGTTCGTTATAGTTCCGTATGACAGAAGATATCGGTGGTGGCAAACTTTCCTGGTAGTGCTAGTGGTGTACTCAGCGTGGGTATCTCCCTTTGAACTTGCCTTCAAGAAAGTGGCAACTGGGTCTCTTTTACCCGTTGATTTGGTGGTGGATGCATTCTTTGCCCTTGACATTTTGTTGACCTTCTTCGTGGCTTACTTGGATAAAGACACCTATCTCCTCGTTGATGATCATAAGAAGATAGCTGTACGTTACCTTACAAGCCTGTGGTTCCCCATGGACGTAGCCTCCACTCTTCCATTTCAGGTGATCTACAGAATTTTCACTGGAAAGATGCACCGCAGTGAGGCCTTCGGCTTCCTCAACTTACTTCGGTTCTGGCGACTAAGGCGCGTTAGTGAACTCTTCACAAGGCTGGAGAAAGACATACGCTTCAGTTACTTTTTTACAAGACTCGCCAAACTAATTTGTGTTACACTGTTGGCAGTTCATTCAGCTGGTTGTTTCTACTACTGGTTAGCAGTTCATCATAAAGAATCAGCAAACACATGGATTGGACTTGAAGTCGAAGATTTTAAGAACAGAAGTATCTGGCTTGGGTACACCTATTCGATATATTGGTCCATTGTCACACTTACTACTGTTGGTTATGGGGACTTGCATGCAGTCAATCTAGGGGAGAAGATTTTTAGCATCTTCTACATGCTATTCAACATTGGCCTCACATCTTATTTGATAGGAAACATGACAAATCTCATCGTTCACAGTGCTATCCGAACATTCATCATGAGGGATTCCATAAATGAGATATTGCGTTATGGAAGCAAGAATAGACTGCCAGAAGGCTTGAAAGATCAAATGTTGGCGCACATGCAACTCAGGTTCAAGACAGCAGAGTTGAAGCAAGAAGAGGTGTTGGAGGATTTACCTAAAGCAATCAGATCCAGTATTGCCCAGCACCTTTTCCGTCATACCGTGGAGAATGCATACTTATTCAAGGGGCTCTCTGAAGACCTTATCGTCCAATTGGTGTCTGAGATGAAAGCAGAGTACTTTCCACCTAAAGTTGACATTATAATACAAAACGAGATACCAACAGATTTCTACATTTTGGTGTCTGGAGCAGTGGATGTGATCTCGTACAGGACTGGAACTGAACAGATTTTGTCAAAGCTGGAATCTCCACAAATGGCAGGAGAAATTGCCGTGATGTTGAATATCCCACAGCCATTTACAGTGAGAACTAGAAGACTCTCCCAAGTCATCAGGATCAGTCATCATCATTTTAAGCAACTGTTACAACCACACAACGAAGATGGAAAAACCATTTTCTCCAAGTTCATTGAGCACTTGAAGGGGTTAAAAAAGGAGGAGCAAAACGAAATACCCTGCTTGTCAGAATTGCTGGAAGACCTAAATACAGAGCACACAGAACCGAACCAGACACAAAATCAGGGAGTACCGAATTATCATGGAGATCAAAAAATGGAAGGATCTGGACCATTTCCACCTACAGCTCGCATCAGGGTGATTATTCACGAGCACCATCCAGATGAAAGTACAAAAGATGGCAACAGTAAGGGAAAACTGGTACTTCTGCCTGAGTCAATTGAAGAACTTTTCGGATTGGCAGAGAAAAGATTTGGCAAGAGAGGGAGCTCAATTCTTATGGCTGATGGCTCTAAAGTAGAAGATTTGAATGTTTTAAGAGAGGGTGATCATTTATTTTTTGCTTGA 1887 43.3 MSTPVSETRSPIPLLFRRHSSGEIKNLTSVSSSLLPAFGTVVNDGYSHLNKFVIVPYDRRYRWWQTFLVVLVVYSAWVSPFELAFKKVATGSLLPVDLVVDAFFALDILLTFFVAYLDKDTYLLVDDHKKIAVRYLTSLWFPMDVASTLPFQVIYRIFTGKMHRSEAFGFLNLLRFWRLRRVSELFTRLEKDIRFSYFFTRLAKLICVTLLAVHSAGCFYYWLAVHHKESANTWIGLEVEDFKNRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNLGEKIFSIFYMLFNIGLTSYLIGNMTNLIVHSAIRTFIMRDSINEILRYGSKNRLPEGLKDQMLAHMQLRFKTAELKQEEVLEDLPKAIRSSIAQHLFRHTVENAYLFKGLSEDLIVQLVSEMKAEYFPPKVDIIIQNEIPTDFYILVSGAVDVISYRTGTEQILSKLESPQMAGEIAVMLNIPQPFTVRTRRLSQVIRISHHHFKQLLQPHNEDGKTIFSKFIEHLKGLKKEEQNEIPCLSELLEDLNTEHTEPNQTQNQGVPNYHGDQKMEGSGPFPPTARIRVIIHEHHPDESTKDGNSKGKLVLLPESIEELFGLAEKRFGKRGSSILMADGSKVEDLNVLREGDHLFFA 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28740669 28748127 - CcPI632755_05g019670.1 Cco05g1967 179595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1967 628 PRINTS EAG/ELK/ERG potassium channel family signature 277 288 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cco05g1967 628 PRINTS EAG/ELK/ERG potassium channel family signature 295 304 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cco05g1967 628 PRINTS EAG/ELK/ERG potassium channel family signature 97 107 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cco05g1967 628 PRINTS EAG/ELK/ERG potassium channel family signature 251 268 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cco05g1967 628 PRINTS EAG/ELK/ERG potassium channel family signature 74 81 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cco05g1967 628 PRINTS EAG/ELK/ERG potassium channel family signature 108 117 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cco05g1967 628 Gene3D Jelly Rolls 349 525 IPR014710 -
Cco05g1967 628 ProSiteProfiles KHA domain profile. 559 628 IPR021789 -
Cco05g1967 628 Coils Coil 505 525 - -
Cco05g1967 628 Pfam KHA, dimerisation domain of potassium ion channel 559 627 IPR021789 -
Cco05g1967 628 ProSiteProfiles cAMP/cGMP binding motif profile. 381 500 IPR000595 -
Cco05g1967 628 Pfam Cyclic nucleotide-binding domain 401 484 IPR000595 -
Cco05g1967 628 FunFam Potassium channel KAT2 369 505 - -
Cco05g1967 628 PANTHER POTASSIUM CHANNEL AKT1 23 516 IPR045319 GO:0005249(InterPro)|GO:0006813(InterPro)
Cco05g1967 628 FunFam Potassium channel KAT3 63 305 - -
Cco05g1967 628 SUPERFAMILY Voltage-gated potassium channels 56 304 - -
Cco05g1967 628 Gene3D - 63 305 - -
Cco05g1967 628 SMART cnmp_10 381 498 IPR000595 -
Cco05g1967 628 Pfam Ion transport protein 61 305 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco05g1967 628 CDD CAP_ED 381 486 IPR000595 -
Cco05g1967 628 SUPERFAMILY cAMP-binding domain-like 310 495 IPR018490 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1126 Cco-Chr5:10256766 Cco05g1967 Cco-Chr5:28740669 3.90E-131 dispersed
Cco05g1967 Cco-Chr5:28740669 Cco06g1242 Cco-Chr6:22383764 1.40E-08 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1967 K21867 - csv:101215177 1150.58