Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1984 ATGCCTCGCAAGGTGAGCCACGGGTTAGATTACGACGAAGATTACGACGAGTACGACGATTACGATTATTACGATAACAATTTCGATGCAGAAGAAAAAGTAACAGAAAAAACACCTGAGACTAAGGAAGAAAGAAAGGGGCATAAGCTTTGGCGATGCCCGATTTGCACTTACGACAACGAAGACAGTTTTTCTGTCTGTGATATATGTGGGGTTCTGCGCAACCCTTTGGTCAACAACAGAAATACTCCTGATGATGGAACAGTTGAGAACATCTGCAAAGACTCTGGAGTATCCAAAATGGCCAAGTCTCTCTTTGCATCATTGCCAAATCAGATACCCAAAAGGGCTGTAAATTTTCAAGAGCAGGACGATAAAATTGTGGAAGAAAGAGAAGAGAACATCCACAAGATTGGAAATATCCGGCGCCATTTGCATGAATTCCATAATGCTTTTAGTACCTGTAGTCATTTCCGTACTAATATAGTCCCCTTCAAGTTTGACATTCCTTCCCCAGATGATTTGGTTTCTAATGGATTGCGTTCCTCGAAAGTTGGTTTAAAAGCAGTCAGCCACAACAACTTCAACTCTTCAATATTATCTTCAGACATCACCAAGAAATCTGCAAATAATGCAGCATTGACTTCAAAAAGTGCACACAGCTCATCTACTGTGTTTTCAACGAGCAAATCAGGCAGTATAGGAGATACACCGTTGAGTACCAAAAGTTCAGACAAATCAGGGATATCAATTGGTAAAAGTACAATGGTTAATGAAGAACATAATACATCAATTAGTGTAACAAAAAATTTACAACCACGTGATAACCGGTCGTCAAGCACTTCCACATCAAAGTCAGCAGGCAAATTTGACAGTATGGATGAGAGCACCAACCCTTCTGTCGAGCGGGAAAAGCCCCAAAGTCTTGCCGGTGGTTTGAACAACATGGTTCTAAATGTCAAATCTGCCTATGCAAATTATATTAGTGGGCTAGGAAAAACATCAAATGCGCAGTATAAGCATGATAAATGGATGCTACCTGATAAAGCTGTAGACACGCTGACTCAGCTGAATCTTGCTATAGTTGGTCATGTTGATTCTGGAAAATCTACACTCTCAGGAAGACTGCTGCACCTATTGGGACGTGTATCCCAAAAAGAAATGCACAAATATGAAAAAGAGGCAAAGTCCCTGGGCAAGGGTTCCTTTGCTTATGCCTGGGCACTGGATGAGAGTGCAGAAGAAAGAGAGAGAGGAATAACTATGACTGTTGGTGTTGCTTATTTTGATTCTAAAAGATATCATGTTGTTGTGCTCGATTCCCCAGGCCATAAAGATTTTGTTCCAAACCTGATATCTGGGGCCACACAAGCTGATGCCGCGGTTCTTGTTATAGATGCATCTGTTGGTGCATTTGAGGCTGGTATGGATGGTTCAAAGGGGCAAACAAGGGAACATGTGCAATTAATCAGGAGCTTTGGTGTAGATCAGATTATTGTTGCAGTTAACAAAATGGATGTGGTGGAGTACTCCAAAGATCGATATGAATTTATTAAGCTGCAACTTGGAACCTTTATTCGTTCATGTGGTTATAAAGATTCATCATTGTCTTGGATTCCATTGAGTGCCATGGCAAATCAGAATCTAGTGACTACCCCTTCTGATGTTCAATTTTTGTCCTGGTACCGTGGACCTAGTCTTTTGGAGGCGATTGATTCCCTTCAACCACCCACTCGAGAATTCTGTAAGCCACTGCTTATGCCGATATGTGACGTAGTTAGATCACTTTCACTGGGACAAGTGTCTGCCTGTGGCAAACTGGAAGCTGGAGCTCTCCAATCTGGATCTAAGGTTCTTATCATGCCATCTGGAGATAAAGCAACCGTCCGCACTTTAGAACGCAATTCTCAGGCTTGCAAAATAGCAAGAGCGGGGGACAATGTGACTGTTTCTCTACAAGGAGTTGAAGCAAGTAGCGTGATGGCTGGGGGTGTCCTATGCCATCCTGATTTTCCTGTTGCTGTTGCAAGACATTTGGAATTGAAGATTCTCACCTTGGAATTTGCAACACCGATATTAATAGGATCTCAGTTGGAAATTCATATACACCATGTGAAGGAGGCTGCTACAGTTTCAAGGATAGTGTCATTACTCGATTCCAAGACGGGAAAGGTCACGAAAAAGGCACCGCGTTGTCTCAGTGCTAAACAAAGTGCAGCGATTGAGGTCGTTTTACAAAGCCCAGTTTGTGTTGAAGCATTCTCAACTAGTCGAGCTCTCGGGCGGGTATTTCTGAGAGCGATGGGTAGAACCATAGCCGTCGGCATTGTAACCCAACTAATCGGAGATCCTGAATAA 2358 42.62 MPRKVSHGLDYDEDYDEYDDYDYYDNNFDAEEKVTEKTPETKEERKGHKLWRCPICTYDNEDSFSVCDICGVLRNPLVNNRNTPDDGTVENICKDSGVSKMAKSLFASLPNQIPKRAVNFQEQDDKIVEEREENIHKIGNIRRHLHEFHNAFSTCSHFRTNIVPFKFDIPSPDDLVSNGLRSSKVGLKAVSHNNFNSSILSSDITKKSANNAALTSKSAHSSSTVFSTSKSGSIGDTPLSTKSSDKSGISIGKSTMVNEEHNTSISVTKNLQPRDNRSSSTSTSKSAGKFDSMDESTNPSVEREKPQSLAGGLNNMVLNVKSAYANYISGLGKTSNAQYKHDKWMLPDKAVDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRVSQKEMHKYEKEAKSLGKGSFAYAWALDESAEERERGITMTVGVAYFDSKRYHVVVLDSPGHKDFVPNLISGATQADAAVLVIDASVGAFEAGMDGSKGQTREHVQLIRSFGVDQIIVAVNKMDVVEYSKDRYEFIKLQLGTFIRSCGYKDSSLSWIPLSAMANQNLVTTPSDVQFLSWYRGPSLLEAIDSLQPPTREFCKPLLMPICDVVRSLSLGQVSACGKLEAGALQSGSKVLIMPSGDKATVRTLERNSQACKIARAGDNVTVSLQGVEASSVMAGGVLCHPDFPVAVARHLELKILTLEFATPILIGSQLEIHIHHVKEAATVSRIVSLLDSKTGKVTKKAPRCLSAKQSAAIEVVLQSPVCVEAFSTSRALGRVFLRAMGRTIAVGIVTQLIGDPE 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28935916 28942817 + CcPI632755_05g019840.1 Cco05g1984 179612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1984 785 SUPERFAMILY Ran binding protein zinc finger-like 47 74 IPR036443 -
Cco05g1984 785 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 593 IPR027417 -
Cco05g1984 785 Gene3D - 348 578 IPR027417 -
Cco05g1984 785 ProSitePatterns Zinc finger RanBP2-type signature. 51 70 IPR001876 -
Cco05g1984 785 Gene3D Translation factors 675 782 - -
Cco05g1984 785 Pfam Elongation factor Tu domain 2 604 667 IPR004161 GO:0005525(InterPro)
Cco05g1984 785 ProSiteProfiles Zinc finger RanBP2 type profile. 45 76 IPR001876 -
Cco05g1984 785 MobiDBLite consensus disorder prediction 215 309 - -
Cco05g1984 785 Pfam GTP-eEF1A C-terminal domain-like 679 778 IPR054696 -
Cco05g1984 785 FunFam Translation elongation factor EF-1 581 671 - -
Cco05g1984 785 PANTHER TRANSLATION FACTOR 355 778 IPR050100 GO:0003924(PANTHER)|GO:0006412(PANTHER)
Cco05g1984 785 CDD HBS1_C_III 672 780 - -
Cco05g1984 785 PRINTS GTP-binding elongation factor signature 498 507 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco05g1984 785 PRINTS GTP-binding elongation factor signature 437 447 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco05g1984 785 PRINTS GTP-binding elongation factor signature 453 464 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco05g1984 785 PRINTS GTP-binding elongation factor signature 417 425 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco05g1984 785 PRINTS GTP-binding elongation factor signature 358 371 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco05g1984 785 Pfam Elongation factor Tu GTP binding domain 357 576 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco05g1984 785 CDD EF1_alpha 358 577 - -
Cco05g1984 785 FunFam Elongation factor 1 alpha-like protein 347 578 - -
Cco05g1984 785 MobiDBLite consensus disorder prediction 215 295 - -
Cco05g1984 785 SUPERFAMILY Translation proteins 576 671 IPR009000 -
Cco05g1984 785 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 354 585 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco05g1984 785 Gene3D Translation factors 582 671 - -
Cco05g1984 785 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 678 781 IPR009001 -
Cco05g1984 785 FunFam elongation factor 1-alpha isoform X4 675 784 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1984 Cco-Chr5:28935916 Cco09g2245 Cco-Chr9:36736683 1.70E-75 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1984 K14416 - csv:101219939 1337.4