Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1985 ATGCCGGGGCTAACCTGTAATGCCTGTAACAAAGAATTTCTAGACGTCGAGGAGCAAAAGCTTCATTACAAGTCCGAATGGCATCGATACAATCTTAAGCGGAAGGTAGCTAATGTTCCTGGGGTTACAGAGGCATTGTTTTTAGCTAGACAATCTGCTGCTGCTGCACAAGAGAATGCCAAATCAAGAGAGACCTTAATGTTATACTCTTGTGGTCTTTGTAGCAAAGCTTATAGGAGTGCCCAGGCTCATGCCCAACATCTTAAATCTAGGAGTCACATCATCCGAGCTTCGCAAGGAGCACATGATCAAGAAGTTGAAAAGCCAATAATTAAGCCCCTTCCTCAGCGAATCTCCAACAAGGCACCCCAACAAAGTGAGGAGGAAGAAGAGAGCGAGGAGGAGTGGGAAGAAGTCGATCCTGACGAAGACATGGTTGATGGAAATGAGGAGGAGGAGGAGGATATTGATGACATTGAGGTGGACTTGGATCCATCATGCTGCTTCATGTGTGATCTAGAGCATGATACCATTGAAAGCTGCATGGTCCACATGCATAAGCAACATGGATTCTTTATTCCTGACGTTGAATATTTGAAGGATCCAAAAGGCTTCCTTACATACATCGGCCTGAAGGTGATGAGAGATTTCAGGTGTCTGTACTGCAATGATAATTGTCTTCCTTTCAGCAGCTTGGAAGCTGTTAGGAAGCATATGGAAGCAAAAAGCCATTGCAAGGTGCATTATGGTGATGAGGACGAGAATGAAGAAGTAGAATTGGAAGAATTTTATGATTACAGCAGCAGTTATGTTGATGGAAGTGGCAACCAGCTCGTACCGGCAGGGGCTCGAGACAATTCTGTCAAGTTTGGTAGTGGTGGAGCTGAGCTCATCTTAGTTCAAGGAACCAGCGAGGGGAAATCGATCAAAACACTTGGTTCCAGGCAATTTCTACGTTATTATCGCCAAAAACCACGACCATCTCCTGCAAATTATGCAGCCATGACTGCTGTATTGGCAGCAAGGTACAGGAGCATGGGATTGGCAACAGTCCAGTCAAGAGAAAAGATGATCAGGATGAAGGTAATCAAAGAAATGAATAGAACTGGGTTGGAAGCTATGCGAACCAAAATCGGATTGAAGAACAACGTAATCCGAAACCTGCCTAAGAATGTTCCATATTAG 1185 44.47 MPGLTCNACNKEFLDVEEQKLHYKSEWHRYNLKRKVANVPGVTEALFLARQSAAAAQENAKSRETLMLYSCGLCSKAYRSAQAHAQHLKSRSHIIRASQGAHDQEVEKPIIKPLPQRISNKAPQQSEEEEESEEEWEEVDPDEDMVDGNEEEEEDIDDIEVDLDPSCCFMCDLEHDTIESCMVHMHKQHGFFIPDVEYLKDPKGFLTYIGLKVMRDFRCLYCNDNCLPFSSLEAVRKHMEAKSHCKVHYGDEDENEEVELEEFYDYSSSYVDGSGNQLVPAGARDNSVKFGSGGAELILVQGTSEGKSIKTLGSRQFLRYYRQKPRPSPANYAAMTAVLAARYRSMGLATVQSREKMIRMKVIKEMNRTGLEAMRTKIGLKNNVIRNLPKNVPY 394
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 28944799 28948378 - CcPI632755_05g019850.1 Cco05g1985 179613
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1985 394 MobiDBLite consensus disorder prediction 127 155 - -
Cco05g1985 394 MobiDBLite consensus disorder prediction 111 155 - -
Cco05g1985 394 SMART ZnF_U1_5 66 100 IPR003604 GO:0003676(InterPro)|GO:0008270(InterPro)
Cco05g1985 394 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676(InterPro)|GO:0008270(InterPro)
Cco05g1985 394 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Cco05g1985 394 SMART c2h2final6 4 28 IPR013087 -
Cco05g1985 394 SMART c2h2final6 69 93 IPR013087 -
Cco05g1985 394 SMART c2h2final6 217 244 IPR013087 -
Cco05g1985 394 SMART c2h2final6 166 189 IPR013087 -
Cco05g1985 394 SUPERFAMILY beta-beta-alpha zinc fingers 151 253 IPR036236 -
Cco05g1985 394 PANTHER ZINC FINGER PROTEIN 622 1 392 IPR040025 GO:0030687(PANTHER)|GO:0042273(PANTHER)
Cco05g1985 394 Pfam C2H2 type zinc-finger (2 copies) 168 270 IPR041661 -
Cco05g1985 394 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Cco05g1985 394 ProSitePatterns Zinc finger C2H2 type domain signature. 71 93 IPR013087 -
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1985 K14816 - csv:101219700 665.611