Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1992 ATGGCGTCTATCCCTGCTTATCGCGAAGCTGCAGGGTCAAGATCCGGGGGGAAAATTGTTCGAGCTAGGCAAGTTCGAAGTAGAAAGACTCCTTATGAGCGTCCTGGACCTTCGAATTTGGGCCCTGGAGGAAACCCTAGTTGGATCTCCAAGTTCATTTTCTCGCCTACTCTTACCATTGCTACCGGCGCCGGAAAATTACTCTCTTCTGTTTTCGTTTCCGACTCCTCGTCCTCCTCTTCAGACAGTGATTCAGAGGATGACGATGAAGACGATGTTCATAATGAAAATTGTGTCTTCCAGGGAGCTGAAGGAGTGAAGAAGAATGGGACATTGGAGATGGTCAACTTATTTAGGAAGGACTTTCCACCAGAGAAAAGAGATAGCAAGCATCTAATTGAACAGCTACTGATGCAGGAGACCTTCTCTAGGGCAGAGCGTGACAAGTTATTTCAGATAATTGAATCGAGGGTTGTAGAATGTCAAACCATTGAAGGCCAGGCTGCAGGGAGACTGACTGAGATATCAAACAAAGCCGTTGATAGTGATGATGGCAGGCCTGCAGTCTGCAGCACAGCGATTCTCGAGGCAAAAAAATGGTTGAATGAAAAACGATTAGGACTGGGGTCTACTTCGACATTGAAATTGGATGATGGGCCATGTACCTTAAATTCCACATTGCTGCCTGTGGTTAACAATGAAGAGATGGGTTCACCTGTAGATGTAGCCAAATCATACATGCAAGCACGTCCTCCATGGGCCTCCCCTTCCACGAGTAATTTTGAGTTCAAGTCTCCTTCACCATTAGGGCTACAGCTTTTCAAAGAAGAAACATCATATTCAATTAGTGGAAATCCATTGTCTTCATCTAAGATTAAAAGGGAATCTCCTGCCAGTGGATCATGGAACATCCAGGAGGAAATACGACGCGTGCGATCAAAAGCAACTGAAGAAATGCTAAGAACTCCATCTGCCAAACTTGATTGGTCTTCATTTGCCTCAGACTACAAAAGTAATTTGAGTTCTGCGCGTTCTGACCATCTGAAATTTCCCAGTGGAGATAAAATACAGCATGCAGTAAAGTCAATAGATAAATCAATGAATTGGTCTGCTGACAATACTGTCACTCATAGCTTATCAGAATCAAAGACTGCACAAGATGTGTCAGAAAATGAAACTTGCTTCCTCGGTACGACAAGCATTGTTCTGCAACAGGATAAGGATTTGGAAACCAATCCTACCACTGAGAGGAAAGTATCAAATTCAAGTTTGGATGAGAGAGAATGCTCTACAGTGCATGAAGATGTGGAGCTGGCCAGCGGTTTTACTCTGGTACCTAGTTCTTGGGAGCTTGCTGTAGAACAGAACCATGTTGACAGTATAGTTGAAGAAAATAATTCATTGGGTCATGACCACGAGGCGAAAGAGCCGTCTGTGGAGGAGCGATGCGAACTATTAAGTGAAGTGTGCATGGATGTTCCAGATGTGAACGAAAACTTGAACGGAAGTGATGTGAGTAAAGTTGTATCAGAAGGCAATGGTAACTGTAAAATCTCCTCGGAAGAAAATGGTGCTCGTAATGTTAATTCAGTAGAGAAGCCATGTTCACAAAGCAGCCTAGCGGCAGGGAAGACTGGGGGTGGAACGGCGTATCTGCGACGGGGAAGACGAAGAAACTGA 1680 44.52 MASIPAYREAAGSRSGGKIVRARQVRSRKTPYERPGPSNLGPGGNPSWISKFIFSPTLTIATGAGKLLSSVFVSDSSSSSSDSDSEDDDEDDVHNENCVFQGAEGVKKNGTLEMVNLFRKDFPPEKRDSKHLIEQLLMQETFSRAERDKLFQIIESRVVECQTIEGQAAGRLTEISNKAVDSDDGRPAVCSTAILEAKKWLNEKRLGLGSTSTLKLDDGPCTLNSTLLPVVNNEEMGSPVDVAKSYMQARPPWASPSTSNFEFKSPSPLGLQLFKEETSYSISGNPLSSSKIKRESPASGSWNIQEEIRRVRSKATEEMLRTPSAKLDWSSFASDYKSNLSSARSDHLKFPSGDKIQHAVKSIDKSMNWSADNTVTHSLSESKTAQDVSENETCFLGTTSIVLQQDKDLETNPTTERKVSNSSLDERECSTVHEDVELASGFTLVPSSWELAVEQNHVDSIVEENNSLGHDHEAKEPSVEERCELLSEVCMDVPDVNENLNGSDVSKVVSEGNGNCKISSEENGARNVNSVEKPCSQSSLAAGKTGGGTAYLRRGRRRN 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29024759 29031108 + CcPI632755_05g019920.1 Cco05g1992 179620

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1992 559 MobiDBLite consensus disorder prediction 410 428 - -
Cco05g1992 559 MobiDBLite consensus disorder prediction 519 544 - -
Cco05g1992 559 MobiDBLite consensus disorder prediction 406 428 - -
Cco05g1992 559 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP1 6 417 - GO:0005635(PANTHER)|GO:0071763(PANTHER)
Cco05g1992 559 MobiDBLite consensus disorder prediction 519 559 - -
Cco05g1992 559 MobiDBLite consensus disorder prediction 1 46 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1992 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g207 . . . Bda03g00039 . . Bma04g00038 . . . . . Car09g00451 . . . Cpe06g00389 . . . . . . . Cla05g01797 Cam05g1919 Cec05g1930 Cco05g1992 Clacu05g1911 Cmu05g1791 Cre05g1919 . . . . Lsi04g02190 Csa03g04400 Chy04g00300 . . . . . . Bpe04g00029 . . Sed05g1643 . Cmo09g00515 . . Car01g01187 . . . Bhi09g02359 Tan01g3728 Cmetu04g2755 . Hepe01g2083 Mch11g0623 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010103 0 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 33