Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1994 ATGAAAATCCAAACTTTTCTTTTTCTTCTTCTTTCAACTTGCTGTTTTGCTCAGCTTCACCTCAACTATTACCATAATTCATGTCCAAATGTTGAGTCCATTGTAAGAGATGCAGTGAAACAAAAATTTCAACAAACTTTTGTCACTGCCCCTGCCACTCTAAGGCTCTTCTTTCATGATTGTTTTGTCAGGGGTTGTGATGCTTCTGTTTTAATTCAAACAAACAACCACACTTCAGAGAAAGATAATGCAGAGAATCTTTCGCTCGCCGGAGACGGGTTCGACACCGTGATCAAAGCTAAAGCTGCTGTCGATAGCGTGCCGGGATGTAAGAATAAGGTCTCTTGTGCTGACATATTGGCTTTGGCTACTAGAGATGTTGTAGCTTTGACAGGAGGACCGTCGTATGCCGTCGAGTTGGGAAGACGAGACGGGCGGATCTCGACGAGAAAGAGCGTTCGACACCATCTTCCTCAGCCTGATTTTGGATTAAATCAACTCAATGCCATGTTTGCAAAACATGGTCTAACTCAAACAGACATGATTGCTCTCTCAGGTGCACATACAATTGGATTCTCACATTGCAAGCATTTCTCCAAAAGGCTATATAGTTTCCACAGCAAAAACAGAATCGACCCGACGTTCAATCCAACGTACGTTGACGAGCTCAAGAAGGAATGCCCGAGAAACGTCGACCAGAGAATCGCGGTCGACATGGACTCGACGTCGTCGTTCACATTTGACAACATGTACTTCAAGAATCTACAAATGGGAAAAGGACTGTTCACCTCAGACCAAGTATTGTTCACTGATCCAAGATCAAGAAAAACAGTGAACTTATTTGCTTCGAACAATACAGCTTTTGAGGAGGCTTTTGTAGTTGCAATGACAAAGCTTGGGAGAGTTGGAGTCAAAACAAGAAACCAAGGGGAGATTAGAATTGACTGTTCATCAGTGAACTGA 963 42.99 MKIQTFLFLLLSTCCFAQLHLNYYHNSCPNVESIVRDAVKQKFQQTFVTAPATLRLFFHDCFVRGCDASVLIQTNNHTSEKDNAENLSLAGDGFDTVIKAKAAVDSVPGCKNKVSCADILALATRDVVALTGGPSYAVELGRRDGRISTRKSVRHHLPQPDFGLNQLNAMFAKHGLTQTDMIALSGAHTIGFSHCKHFSKRLYSFHSKNRIDPTFNPTYVDELKKECPRNVDQRIAVDMDSTSSFTFDNMYFKNLQMGKGLFTSDQVLFTDPRSRKTVNLFASNNTAFEEAFVVAMTKLGRVGVKTRNQGEIRIDCSSVN 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29062166 29063538 - CcPI632755_05g019940.1 Cco05g1994 179622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1994 320 ProSitePatterns Peroxidases proximal heme-ligand signature. 180 190 IPR019793 -
Cco05g1994 320 SUPERFAMILY Heme-dependent peroxidases 18 320 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g1994 320 ProSitePatterns Peroxidases active site signature. 50 61 IPR019794 GO:0004601(InterPro)
Cco05g1994 320 ProSiteProfiles Plant heme peroxidase family profile. 18 320 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g1994 320 PRINTS Haem peroxidase superfamily signature 50 64 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g1994 320 PRINTS Haem peroxidase superfamily signature 240 255 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g1994 320 PRINTS Haem peroxidase superfamily signature 114 131 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g1994 320 PRINTS Haem peroxidase superfamily signature 132 144 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g1994 320 PRINTS Haem peroxidase superfamily signature 180 195 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g1994 320 Pfam Peroxidase 35 284 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g1994 320 PANTHER - 7 320 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g1994 320 Gene3D - 22 320 - -
Cco05g1994 320 PRINTS Plant peroxidase signature 254 271 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g1994 320 PRINTS Plant peroxidase signature 92 105 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g1994 320 PRINTS Plant peroxidase signature 179 191 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g1994 320 PRINTS Plant peroxidase signature 28 47 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g1994 320 PRINTS Plant peroxidase signature 52 72 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g1994 320 PRINTS Plant peroxidase signature 238 253 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g1994 320 PRINTS Plant peroxidase signature 113 123 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g1994 320 PRINTS Plant peroxidase signature 132 147 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g1994 320 PRINTS Plant peroxidase signature 294 307 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco05g1994 320 FunFam Peroxidase 22 166 - -
Cco05g1994 320 FunFam Peroxidase 158 299 - -
Cco05g1994 320 CDD secretory_peroxidase 18 319 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cco05g1994 320 Gene3D Peroxidase, domain 2 158 299 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1499 Cco-Chr4:30414089 Cco05g1994 Cco-Chr5:29062166 1.30E-114 dispersed
Cco05g1994 Cco-Chr5:29062166 Cco11g0728 Cco-Chr11:8021669 6.70E-103 dispersed
Cco05g1994 Cco-Chr5:29062166 Cco02g1316 Cco-Chr2:24978794 3.40E-115 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1994 K00430 - csv:101218982 619.002