Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2001 ATGCTACGAATGGCCTCATTCTCCTCTGGTCCTTTGGCAGTAAATTCATCAGACTCAACGGCCGTATTTTCTTGTTCGCTCTCTTCTCGCACAGCCACCGCCCAACGTCGGAGAGACTCTCCTCGGAGTCCTAATCTCAAGCGACTGACCTCTCGTGTGGTCAGACTCACCCGTCGCAAACAGCTCCACCAGGTATTTGAGGAAATTGCAATTGCCAAGAGACGTTATGGAAAACTTAATACAATTGTTATGAATGCCGTCTTGGAGGCTTGTGTTCACTGCGGTGATATTGATTTAGCTCTGAGGACTTTTAATGAAATGTCAAAGCCAGATAATTGTGGTCTAGACAATGTCAGTTATGGCACGCTATTAAAGGGTTTGGGTGAAGCTCGGAAGATTGATGAAGCATTTCAATTACTTGAATCTGTGGAAGAAGGTTCCGCTATTGGAGGTCCAACATTGTCAGCACCACTTATTTATGGTCTTCTAAACGCTTTAGTTGAAGCAGGAGACATGCGCCGTGCCAATGGTCTAATAGCACGATATGGGTTCTTACTTCGTGAAGGAGGCAATCTCTCTATATCCGTTTACAACTTACTGATGAAGGGGTACATAAGCTCAGGTGTTCCTCAAGCTGCTTTAGCAATGTACAATGAGATGCTAAATGTGGAGTTAAAACCTGATAGGCTCACATATAATACATTAATCTCTGCTTGTGTGAAGATTAACAAACTGGACGCAGCAATACATTTCTTTGAGGAAATGAAGGAACAAGCTGATAAGTATGATCAGGAAGATATCTTTCCTGATGTTGTGACGTACACTACTTTACTTAAGGGTTTTGGGCTTCTGAAAGATGTCCATCTTGTTCACAAGATTGTGCTGGAAATGAAGTCTTGTCATGATTTATTGATTGATCGAACAGCATACACCGCAATGATTGATGCTTTGGTTAACTGTGGCTCTATAAACGGTGCTCTTTCTTTATTTGGGGAATTATTGAAGCTTTCTGGATGGAATTTGGACTTACGGCCAAAGCCACATCTTTATCTCACTCTTATGAGAGTTTTTTCTAGTAGAGGAGATTATTGGATGGTCAAACGTTTGCATAGACGCATGTGGTTGGACTCCTCTGGAAGTATTTCTCCTGTATTTCAAGAAGAAGCAGATCATCTTCTCATGGAGGCAGCTTTAAATGACAATCAGATTGATGTGGCAATAGAGAAACTTTCAACAATTATTAAGAAATGGAAGGGAATCTCATGGGCTAGTCGAGGAGGCAGTGTTGCTCTGCGTATTGAAGCATTGCTGGGACTCACCAAATCCTTTTTTAGTCCTCCTTGCATATTTCCTCGGATAAATCCGGGTGCACCTATTGAGAATGTTATGTTGCCATTTAAAGCCGTTCAGCCATTAAATGGAAGCTTACAGTTGAAGGAAGTGGTTATGCGTTTCTTTGACAAATCAGTTGTGCCTATCGTAGACGACTGGGGTAGATGCATTGGACTGCTGCACCGAGAAGACTGTACTGAGTTGGATGCTCCCCTTTGGAAAATGATGAGAAGCCCTCCTCCTGGTGTAACAACTACCACATCCATTGGACATGTTGCGAATCTAATTCTACAAAAGAGGCACAAAATGATTATTGTTGTAAGACATAGCAAGTTTAGTACATATGATGGCTTGAGTTTGAGGGCTGTCGGCGTTTTTACTACCGAGCAATTGTATGGCTTTATTTCTCCCATTCCGATGCAGTCTCAGCCAAACATTCCACGGATGAACATCGAAATGGAGATTTTTTCGAAGGTGATGATCGACCAAGTTGCATGA 1830 42.3 MLRMASFSSGPLAVNSSDSTAVFSCSLSSRTATAQRRRDSPRSPNLKRLTSRVVRLTRRKQLHQVFEEIAIAKRRYGKLNTIVMNAVLEACVHCGDIDLALRTFNEMSKPDNCGLDNVSYGTLLKGLGEARKIDEAFQLLESVEEGSAIGGPTLSAPLIYGLLNALVEAGDMRRANGLIARYGFLLREGGNLSISVYNLLMKGYISSGVPQAALAMYNEMLNVELKPDRLTYNTLISACVKINKLDAAIHFFEEMKEQADKYDQEDIFPDVVTYTTLLKGFGLLKDVHLVHKIVLEMKSCHDLLIDRTAYTAMIDALVNCGSINGALSLFGELLKLSGWNLDLRPKPHLYLTLMRVFSSRGDYWMVKRLHRRMWLDSSGSISPVFQEEADHLLMEAALNDNQIDVAIEKLSTIIKKWKGISWASRGGSVALRIEALLGLTKSFFSPPCIFPRINPGAPIENVMLPFKAVQPLNGSLQLKEVVMRFFDKSVVPIVDDWGRCIGLLHREDCTELDAPLWKMMRSPPPGVTTTTSIGHVANLILQKRHKMIIVVRHSKFSTYDGLSLRAVGVFTTEQLYGFISPIPMQSQPNIPRMNIEMEIFSKVMIDQVA 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29090748 29099477 - CcPI632755_05g020010.1 Cco05g2001 179629

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2001 609 Gene3D Tetratricopeptide repeat domain 183 261 IPR011990 GO:0005515(InterPro)
Cco05g2001 609 Gene3D Tetratricopeptide repeat domain 20 182 IPR011990 GO:0005515(InterPro)
Cco05g2001 609 Gene3D Tetratricopeptide repeat domain 262 436 IPR011990 GO:0005515(InterPro)
Cco05g2001 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 341 IPR002885 -
Cco05g2001 609 SUPERFAMILY CBS-domain pair 457 554 IPR046342 -
Cco05g2001 609 NCBIfam pentatricopeptide repeat 118 142 IPR002885 -
Cco05g2001 609 NCBIfam pentatricopeptide repeat 231 258 IPR002885 -
Cco05g2001 609 NCBIfam pentatricopeptide repeat 309 339 IPR002885 -
Cco05g2001 609 NCBIfam pentatricopeptide repeat 196 228 IPR002885 -
Cco05g2001 609 NCBIfam pentatricopeptide repeat 84 108 IPR002885 -
Cco05g2001 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 258 IPR002885 -
Cco05g2001 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 146 IPR002885 -
Cco05g2001 609 Pfam PPR repeat family 80 127 IPR002885 -
Cco05g2001 609 Pfam PPR repeat family 227 281 IPR002885 -
Cco05g2001 609 ProSiteProfiles CBS domain profile. 519 586 IPR000644 -
Cco05g2001 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 193 227 IPR002885 -
Cco05g2001 609 Pfam PPR repeat 309 335 IPR002885 -
Cco05g2001 609 Pfam PPR repeat 196 221 IPR002885 -
Cco05g2001 609 PANTHER OS09G0431600 PROTEIN 26 584 IPR044781 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2001 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2001 Cco-Chr5:29090748 Cco09g1724 Cco-Chr9:29115467 2.90E-06 dispersed
Cco05g2001 Cco-Chr5:29090748 Cco03g1855 Cco-Chr3:33266874 6.50E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g198 . . . . . . . . . . . . Car09g00456 . . . Cpe06g00392 . . . . . . . Cla05g01804 Cam05g1926 Cec05g1938 Cco05g2001 Clacu05g1918 Cmu05g1800 Cre05g1926 Cone4ag1857 Cone7ag1764 . . Lsi04g02196 Csa03g04406 . . . . . . . . . . Sed13g2091 . Cmo09g00518 . . . . . . Bhi09g02372 Tan01g3737 Cmetu04g2143 . Hepe01g2090 Mch11g0628 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013021 0 2 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 28