Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2006 ATGGATAGGGATTGTAATACGGGGCTTCTCCTTGGCCTGGGGCGGGTTTCGGGTGATGATTCCCTGGGTTCCCTCCTACCACCCGAAGTAGCCGATGTGAAGAAGAAGCTCCAGGTTTTGAAGTTTGATGATATTTTGCCTTCTTTGACGCTTGGATTGTCGACTGTTGTAGAGAAGAGCGCCGCCACCGACGAATTAATTCAGCAGGGGTGTTCGGGTAGTCCGGCGTCGTCGTTTTCAAACTCATCGGGGTTTAAAAGAGAGCGAGACGGCGGCGGTGAAGAGAAGGAGGGGGAGGTGTATATGAAAGTGGGTGAGGAAGATGAAGATGGAAGTCCCAGGAAGAAACTTAGATTAACTAAACAACAATCCGCCATTTTAGAGGATAACTTCAAAGAGCACTCAAGTCTCAGTCCTAAACAAAAGCAGGATTTGGCCAAACAGTTAAAGCTAAGGCCAAGACAAGTGGAAGTATGGTTTCAAAACAGAAGAGCCAGAACCAAGCTGAAGCAAACAGAAATGGACTGTGAATTACTGAAGAAATGTTGTGAAAAGCTGAAAGAAGAAAACACAAGGCTTCAAAAGGAACTTCAAGAGCTTAAATCACTCAAATTAACGGCTCCACCGTTCTGCATGCAGCTACAAGCCGCCACTCTCACCGTTTGCCCTTCATGTGAGAGCTCAATTTGCAGCGGCGGGGGAGGAGGTGGCGGTGATGCATCTCCGCCCAACAATTTCTCAATTGGATCAAAGCCTCACTTTCTCGAATTTCCCTTTAAACACCCATCGGCGGCTTGTTAG 801 47.57 MDRDCNTGLLLGLGRVSGDDSLGSLLPPEVADVKKKLQVLKFDDILPSLTLGLSTVVEKSAATDELIQQGCSGSPASSFSNSSGFKRERDGGGEEKEGEVYMKVGEEDEDGSPRKKLRLTKQQSAILEDNFKEHSSLSPKQKQDLAKQLKLRPRQVEVWFQNRRARTKLKQTEMDCELLKKCCEKLKEENTRLQKELQELKSLKLTAPPFCMQLQAATLTVCPSCESSICSGGGGGGGDASPPNNFSIGSKPHFLEFPFKHPSAAC 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29163965 29165355 + CcPI632755_05g020060.1 Cco05g2006 179634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2006 266 SMART HOX_1 112 174 IPR001356 GO:0003677(InterPro)
Cco05g2006 266 Pfam Homeobox associated leucine zipper 170 203 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g2006 266 MobiDBLite consensus disorder prediction 68 85 - -
Cco05g2006 266 SMART halz 170 213 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g2006 266 FunFam Homeobox-leucine zipper protein 18 100 175 - -
Cco05g2006 266 MobiDBLite consensus disorder prediction 87 116 - -
Cco05g2006 266 Gene3D - 105 175 - -
Cco05g2006 266 Coils Coil 169 206 - -
Cco05g2006 266 ProSiteProfiles 'Homeobox' domain profile. 110 170 IPR001356 GO:0003677(InterPro)
Cco05g2006 266 SUPERFAMILY Homeodomain-like 111 178 IPR009057 -
Cco05g2006 266 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 76 227 IPR050762 -
Cco05g2006 266 ProSitePatterns 'Homeobox' domain signature. 145 168 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cco05g2006 266 CDD homeodomain 113 171 IPR001356 GO:0003677(InterPro)
Cco05g2006 266 MobiDBLite consensus disorder prediction 68 116 - -
Cco05g2006 266 Pfam Homeodomain 114 168 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2006 Cco-Chr5:29163965 Cco10g0785 Cco-Chr10:14746659 3.40E-52 dispersed
Cco05g2006 Cco-Chr5:29163965 Cco09g0363 Cco-Chr9:3298066 4.20E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59335 PF00046 Homeodomain 3.90E-17 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2006 K09338 - csv:101212868 329.717