Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g2006 | ATGGATAGGGATTGTAATACGGGGCTTCTCCTTGGCCTGGGGCGGGTTTCGGGTGATGATTCCCTGGGTTCCCTCCTACCACCCGAAGTAGCCGATGTGAAGAAGAAGCTCCAGGTTTTGAAGTTTGATGATATTTTGCCTTCTTTGACGCTTGGATTGTCGACTGTTGTAGAGAAGAGCGCCGCCACCGACGAATTAATTCAGCAGGGGTGTTCGGGTAGTCCGGCGTCGTCGTTTTCAAACTCATCGGGGTTTAAAAGAGAGCGAGACGGCGGCGGTGAAGAGAAGGAGGGGGAGGTGTATATGAAAGTGGGTGAGGAAGATGAAGATGGAAGTCCCAGGAAGAAACTTAGATTAACTAAACAACAATCCGCCATTTTAGAGGATAACTTCAAAGAGCACTCAAGTCTCAGTCCTAAACAAAAGCAGGATTTGGCCAAACAGTTAAAGCTAAGGCCAAGACAAGTGGAAGTATGGTTTCAAAACAGAAGAGCCAGAACCAAGCTGAAGCAAACAGAAATGGACTGTGAATTACTGAAGAAATGTTGTGAAAAGCTGAAAGAAGAAAACACAAGGCTTCAAAAGGAACTTCAAGAGCTTAAATCACTCAAATTAACGGCTCCACCGTTCTGCATGCAGCTACAAGCCGCCACTCTCACCGTTTGCCCTTCATGTGAGAGCTCAATTTGCAGCGGCGGGGGAGGAGGTGGCGGTGATGCATCTCCGCCCAACAATTTCTCAATTGGATCAAAGCCTCACTTTCTCGAATTTCCCTTTAAACACCCATCGGCGGCTTGTTAG | 801 | 47.57 | MDRDCNTGLLLGLGRVSGDDSLGSLLPPEVADVKKKLQVLKFDDILPSLTLGLSTVVEKSAATDELIQQGCSGSPASSFSNSSGFKRERDGGGEEKEGEVYMKVGEEDEDGSPRKKLRLTKQQSAILEDNFKEHSSLSPKQKQDLAKQLKLRPRQVEVWFQNRRARTKLKQTEMDCELLKKCCEKLKEENTRLQKELQELKSLKLTAPPFCMQLQAATLTVCPSCESSICSGGGGGGGDASPPNNFSIGSKPHFLEFPFKHPSAAC | 266 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 29163965 | 29165355 | + | CcPI632755_05g020060.1 | Cco05g2006 | 179634 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g2006 | 266 | SMART | HOX_1 | 112 | 174 | IPR001356 | GO:0003677(InterPro) | |
Cco05g2006 | 266 | Pfam | Homeobox associated leucine zipper | 170 | 203 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco05g2006 | 266 | MobiDBLite | consensus disorder prediction | 68 | 85 | - | - | |
Cco05g2006 | 266 | SMART | halz | 170 | 213 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco05g2006 | 266 | FunFam | Homeobox-leucine zipper protein 18 | 100 | 175 | - | - | |
Cco05g2006 | 266 | MobiDBLite | consensus disorder prediction | 87 | 116 | - | - | |
Cco05g2006 | 266 | Gene3D | - | 105 | 175 | - | - | |
Cco05g2006 | 266 | Coils | Coil | 169 | 206 | - | - | |
Cco05g2006 | 266 | ProSiteProfiles | 'Homeobox' domain profile. | 110 | 170 | IPR001356 | GO:0003677(InterPro) | |
Cco05g2006 | 266 | SUPERFAMILY | Homeodomain-like | 111 | 178 | IPR009057 | - | |
Cco05g2006 | 266 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 76 | 227 | IPR050762 | - | |
Cco05g2006 | 266 | ProSitePatterns | 'Homeobox' domain signature. | 145 | 168 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Cco05g2006 | 266 | CDD | homeodomain | 113 | 171 | IPR001356 | GO:0003677(InterPro) | |
Cco05g2006 | 266 | MobiDBLite | consensus disorder prediction | 68 | 116 | - | - | |
Cco05g2006 | 266 | Pfam | Homeodomain | 114 | 168 | IPR001356 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g2006 | Cco-Chr5:29163965 | Cco10g0785 | Cco-Chr10:14746659 | 3.40E-52 | dispersed | |
Cco05g2006 | Cco-Chr5:29163965 | Cco09g0363 | Cco-Chr9:3298066 | 4.20E-42 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59335 | PF00046 | Homeodomain | 3.90E-17 | CL0123 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g2006 | K09338 | - | csv:101212868 | 329.717 |