Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2007 ATGGGTGTTGTTAATACCTTTCATCTTCAACATGGAACCGACTGTTTTCAACCGCACCACCCGATTGTCAAAACTGAAGCCACTACTTCACACCATCAGCTTCTCAAATTTCATTACCCTTTAATCAGACCGCCACCACCAGCTCACCCTCCGCCGACATGTCGTCCTGAACAAAACGGTGTCGTTGATGTTGAAGCCATTAAGGCTAAAATCCTTGCTCATCCTCAATACTCCAGCCTCCTCGAAGCCTACATGGAATGTCAGAAGGTGGGTGCTCCGCCGCAAGTGGTGGAGCGGCTGGTGGCGGCCCGGCAAGAATTTGAAGCACGGCAGCGTTCTTCCATGGTTTCTGGAGATACCACAAAGGATCCAGAGCTTGATCAATTCATGGAAGCTTATTACGACATGTTGGTGAAATATCGGGAGGAACTTTCAAGGCCGATTCAAGAAGCCATGGATTTCATGAGAAGGATTGAATCTCAGCTCACTTCTCTCTGTAATGGCCCAGTTCGGATCTTCAATTCCGACGAGAAGTGTGAAGGTATGGGATCGTCTGAGGAGGAACAAGACAATAGCGGCGGAGAAACCGAACTTCCGGAGATAGATCCTCGTGCCGAAGATAGAGAATTGAAGAATCACCTACTGAGGAAGTACAGTGGTTACCTGAGCAGTCTCAAGCAAGAACTTTCTAAGAAAAAGAAAAAAGGAAAACTCCCAAAAGATGCAAGGCAGAAACTGCTTAATTGGTGGGAGTTACATTACAAATGGCCATACCCCTCAGAGACAGAGAAGGTGGCGTTAGCTGAATCCACTGGGTTGGATCAGAAGCAAATAAACAATTGGTTCATAAACCAAAGGAAGAGACACTGGAAACCTTCTGAAGATATGCAGTTCATGGTGATGGATGGGCTTCATCCTCCCAATGCCGCCCTATATATTGACGGTCACTACATGACCGATGGCCATTATCGGCTCGGACCATGA 984 47.15 MGVVNTFHLQHGTDCFQPHHPIVKTEATTSHHQLLKFHYPLIRPPPPAHPPPTCRPEQNGVVDVEAIKAKILAHPQYSSLLEAYMECQKVGAPPQVVERLVAARQEFEARQRSSMVSGDTTKDPELDQFMEAYYDMLVKYREELSRPIQEAMDFMRRIESQLTSLCNGPVRIFNSDEKCEGMGSSEEEQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPPNAALYIDGHYMTDGHYRLGP 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29168120 29171903 - CcPI632755_05g020070.1 Cco05g2007 179635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2007 327 Pfam KNOX2 domain 121 166 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco05g2007 327 Gene3D - 234 296 - -
Cco05g2007 327 FunFam Homeobox protein knotted-1-like 2 234 296 - -
Cco05g2007 327 ProSiteProfiles 'Homeobox' domain profile. 229 292 IPR001356 GO:0003677(InterPro)
Cco05g2007 327 Pfam ELK domain 209 230 IPR005539 GO:0003677(InterPro)
Cco05g2007 327 CDD homeodomain 241 293 IPR001356 GO:0003677(InterPro)
Cco05g2007 327 SMART KNOX1_2 65 109 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco05g2007 327 ProSitePatterns 'Homeobox' domain signature. 267 290 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cco05g2007 327 SUPERFAMILY Homeodomain-like 230 305 IPR009057 -
Cco05g2007 327 SMART ELK_2 209 230 IPR005539 GO:0003677(InterPro)
Cco05g2007 327 SMART ELK_2 125 145 IPR005539 GO:0003677(InterPro)
Cco05g2007 327 SMART HOX_1 231 296 IPR001356 GO:0003677(InterPro)
Cco05g2007 327 Pfam KNOX1 domain 66 108 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco05g2007 327 SMART KNOX2_2 116 167 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco05g2007 327 ProSiteProfiles ELK domain profile. 209 229 IPR005539 GO:0003677(InterPro)
Cco05g2007 327 Pfam Homeobox KN domain 249 288 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco05g2007 327 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 67 299 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco05g2007 327 MobiDBLite consensus disorder prediction 176 205 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0232 Cco-Chr2:2172233 Cco05g2007 Cco-Chr5:29168120 7.70E-73 dispersed
Cco02g1619 Cco-Chr2:28814351 Cco05g2007 Cco-Chr5:29168120 2.20E-33 dispersed
Cco04g1953 Cco-Chr4:33844720 Cco05g2007 Cco-Chr5:29168120 2.30E-77 dispersed
Cco05g1891 Cco-Chr5:27967000 Cco05g2007 Cco-Chr5:29168120 5.10E-29 dispersed
Cco05g2007 Cco-Chr5:29168120 Cco05g2818 Cco-Chr5:35868572 1.10E-71 dispersed
Cco05g2007 Cco-Chr5:29168120 Cco08g1861 Cco-Chr8:29647500 1.50E-97 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59336 PF03791 KNOX2 2.80E-25 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2007 - - - 0.0