Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2009 ATGATGATCGGAGAACAATCTAGATTCAATCACACCATTCAAGTTCCTCCTTGGGACCCACTTGAAGACCACCATATGACCGGAATTTCCTCGCCGGTCTTCATCGCCGGTGGGGTCGACTCATTTATCGACTCCTTTTCCGCCATTCACCATTACCTTCCCTCTGCGGCGGATTCCGACGATTTGGACGCGGTGGCGGAAGCGGTGGATGGTTTTTCCTGTGACCATTTTCGGATGTTCGAGTTCAAAATCCGGAGATGCGCACGTGGGAGGTCGCACGATTGGACGGAGTGTCCGTACGCACATCCCGGCGAGAAAGCTCGCCGCCGAGATCCGAGGAAGCATTGTTACTCCGGTACGGCTTGTCCGGAGTTTCGGAAAGGGAATTGCAAGAAAGGAGATTCTTGCGATCTCGCTCACGGGATTTTTGAGTGTTGGCTTCATCCAGCTCGTTACCGGACTCAGCCATGTAAGGATGGATTAGCCTGTCGCCGTCGTGTCTGTTTTTTCGCTCACACGCCGGAACAGCTTCGGGTTGTGCCGCAGCAGAGCCCGAGAACGCCTGTTTCGGCCGATTCCGTTGATGGTTCTTCACGAATTGCACACGCACTCGATTCCTATTTTGCTAAAGGGTCATTTGTGACCTCACCCACTTCAATCCTATCAACGCCGCCTGTCTCTCCTCCGTCCGATTCACCACCCCTGTCGCCGAATTGTCCGTTTCATTCGATGAATGGACTGGTTTCATGTATGCGTAATCTTCAAATTGGGAAATTGAAAGCAACCCCTCATTGGGGGAGGATTCAATTGGGGCACAATCCGCTCTCTCCCTCCGGCTCTGGTTTCTTTAACTTACCGTCAACTCCGACCATCGGAAATTACGAATTATGGGGGAAGAATTACGAGGAAGAACCGGTAATGGAGAGAGTGGAATCTGGGAGAGACCTTAGAGCCAAAATGTATGCGAAACTCAGCAAAGACAACTCTGTTAAGGAAGTGGATTCGACATTGACACCCGATGTCGGATGGGTGTCGGAGCTATTAATGTGA 1050 51.43 MMIGEQSRFNHTIQVPPWDPLEDHHMTGISSPVFIAGGVDSFIDSFSAIHHYLPSAADSDDLDAVAEAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKHCYSGTACPEFRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHTPEQLRVVPQQSPRTPVSADSVDGSSRIAHALDSYFAKGSFVTSPTSILSTPPVSPPSDSPPLSPNCPFHSMNGLVSCMRNLQIGKLKATPHWGRIQLGHNPLSPSGSGFFNLPSTPTIGNYELWGKNYEEEPVMERVESGRDLRAKMYAKLSKDNSVKEVDSTLTPDVGWVSELLM 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29212242 29213291 + CcPI632755_05g020090.1 Cco05g2009 179637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2009 349 PANTHER UNKEMPT FAMILY MEMBER 42 348 IPR045234 -
Cco05g2009 349 ProSiteProfiles Zinc finger C3H1-type profile. 117 143 IPR000571 GO:0046872(InterPro)
Cco05g2009 349 FunFam Zinc finger CCCH domain-containing protein 66 74 142 - -
Cco05g2009 349 Gene3D - 117 180 - -
Cco05g2009 349 SMART c3hfinal6 116 142 IPR000571 GO:0046872(InterPro)
Cco05g2009 349 SMART c3hfinal6 151 174 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1644 Cco-Chr3:31120749 Cco05g2009 Cco-Chr5:29212242 6.30E-92 dispersed
Cco05g2009 Cco-Chr5:29212242 Cco11g0213 Cco-Chr11:2060806 1.60E-86 dispersed
Cco05g2009 Cco-Chr5:29212242 Cco08g1862 Cco-Chr8:29671343 2.60E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59337 None None None None Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2009 - - - 0.0