Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2014 ATGGGAATCTGTATATCCTCTGCATCTTCTCAGATTCGCCATGAAACTAACAAAGTTGGGAGTGTTTTAGAAGAAGATTATTGTAAAAAGTCTTATTCTGTGTGTGGGATTCAGAAACTGGAATCCATCTGTTCCAAGCAAGGGAGGAAAGGAGTCAACCAAGATGCTGCCTTTTCCTATCAAGAGTATGGAGAAGCAAAGGAGAGTTGTTTGTTTGGAGTTTTTGATGGGCATGGACAAAATGGTCATATTGTGAGCAACATAGTGAAGAATAGATTACCTTCACTGTTGCTTGGGCAGATAACTGGGGAGACAAAGAGTTTTGAATTGTGGAAACAAGCTTTTGAAACTTCCTTCAAGGCCATGGATAAGGATATCAAAGTTGAAGAGAATTTGGATTGCTCCTATAGCGGATCCACCGCAGTTGTGGTGGTCAAGCAGGGAGATTATTTGGTAATTGGGAATTTGGGGGATTCGAGGGCGGTGATGGGGAGGATCACGGATGATGGAGGAATCAAAGCCATTCAATTAACCACTGATTTGAAGCCTGGATTACCGAGTGAGGGTGAGCGAATAAGGAGGTGCAAAGGGAGGGTGTTGGCGCTGAAAGAAGAGGAGCATATACCCAGAGTGTGGCTGCCCAATGAAGACGCCCCGGGGCTAGCTATGTCCAGAGCTTTTGGAGATTTTGCTCTTAAACATTATGGCATTATTGCTCTCCCCGTTGTCTCCTTCCGCCCTCTTACTTCTCACGATCGTTTTATTATTCTCGCCACTGATGGGATATGGGACGTGCTGAGCAACAATGAAGTAGCGTCCATCGTGTGGGCGGCGGAGAGCGAAGAAGCGGCCGCGAAAGCGGTGGTGGAGGCGGCGGCCGAGGCTTGGAAACGCTACCCTTCTTCAAAACACGACGACTGCACCGTCTTAGAACCGGCGTTCTCCGTCGTCGGTCAGGCCATGTCCGGGACCGGGAAAGAAACCAATCGATTCCGTTTCATCTATAATCATCTGAGGGTGGTTTTGAAGTTTACAGAGGCTTGCAAATTTATGCATTTTAAACGGATTTTGGCAGTAAAAGAAGCAAGCCATCGGGTTGGGAATTTCATTGAATCACAGTTATTTAAAAGCCTGATGGAAAGGGATCCCTTGAGAAACAACAACAACAACAATAATAATAGCAATGGCACCGCCAACACATCGGGTAGAAGCGGAGCCGAAGCGTCATCGTTGCTACTGAGATCCAATTGCGATGCTACAAGACAGACCGCACCATCGGACTTTGTTTTGCAGTGGGGAAACCGGAAGCGCCTTAGATGTATGAAGGTCCAAGGCAGAGACAAAACCGACCCCGCCACTCCGGCTCACCGTACCACCGCCCGAGTCGACCGCCGAGTTGTTAGAACCGATAAAGACTCCCCCAACCGGACCAATTCTCCTGCAAATCACAATAATATCAACAATGGGTATTTGAATCTCCGCCAACGACCCTCATCCCCTCAACTCCCCCCTCCTCACCACCGCATTCTCAGGAACTCGGAGACGGCAGGGGCGATGAGAGGTCAAGGCAACGGCGGCGTTAGGGGAATTGCGTCACCGGACAGAGTGGCGCACGATAGAAGAGGAAGCAATAACCTCCACCTCCACCACCACCACCACCATCACTCCAACAACAACAATCATCATCATCATCACAATGAGAATAACAACAAATCAGCGGCCACGTCGGACACGGCGCACGATAGTAAAAAGGGTGGTTCTTCATCCGGTGGCAGTGGCGAGGCTGCTGTGCCTCAAGTATGGCCGCCAAAATTCGCTATTGCTTTGACGAACAAAGAGAAAGAAGAGGATTTTTTGGCAATCAAAGGCTCTAAATTGCCTCAAAGACCCAAGAAACGAGCCAAGATTATCCAACGCACTGTCAACCTGGTGAGTCCGGGGGCATGGTTATCTGATCTAACTCTCGAGCGGTATGAAGTTAGGGAGAAAAAGATTTCTAAGAAGAGACCGAGAGGATTGAAGGCAATGGGTAACATGGAGTCGGATTCGGAGTGA 2055 48.61 MGICISSASSQIRHETNKVGSVLEEDYCKKSYSVCGIQKLESICSKQGRKGVNQDAAFSYQEYGEAKESCLFGVFDGHGQNGHIVSNIVKNRLPSLLLGQITGETKSFELWKQAFETSFKAMDKDIKVEENLDCSYSGSTAVVVVKQGDYLVIGNLGDSRAVMGRITDDGGIKAIQLTTDLKPGLPSEGERIRRCKGRVLALKEEEHIPRVWLPNEDAPGLAMSRAFGDFALKHYGIIALPVVSFRPLTSHDRFIILATDGIWDVLSNNEVASIVWAAESEEAAAKAVVEAAAEAWKRYPSSKHDDCTVLEPAFSVVGQAMSGTGKETNRFRFIYNHLRVVLKFTEACKFMHFKRILAVKEASHRVGNFIESQLFKSLMERDPLRNNNNNNNNSNGTANTSGRSGAEASSLLLRSNCDATRQTAPSDFVLQWGNRKRLRCMKVQGRDKTDPATPAHRTTARVDRRVVRTDKDSPNRTNSPANHNNINNGYLNLRQRPSSPQLPPPHHRILRNSETAGAMRGQGNGGVRGIASPDRVAHDRRGSNNLHLHHHHHHHSNNNNHHHHHNENNNKSAATSDTAHDSKKGGSSSGGSGEAAVPQVWPPKFAIALTNKEKEEDFLAIKGSKLPQRPKKRAKIIQRTVNLVSPGAWLSDLTLERYEVREKKISKKRPRGLKAMGNMESDSE 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29263968 29275700 - CcPI632755_05g020140.1 Cco05g2014 179642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2014 684 CDD PP2Cc 42 276 IPR001932 -
Cco05g2014 684 MobiDBLite consensus disorder prediction 544 561 - -
Cco05g2014 684 Pfam Protein phosphatase 2C 44 293 IPR001932 -
Cco05g2014 684 Pfam Protein of unknown function (DUF1639) 609 658 IPR012438 -
Cco05g2014 684 PANTHER PROTEIN PHOSPHATASE 42 309 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cco05g2014 684 MobiDBLite consensus disorder prediction 382 407 - -
Cco05g2014 684 MobiDBLite consensus disorder prediction 571 594 - -
Cco05g2014 684 MobiDBLite consensus disorder prediction 665 684 - -
Cco05g2014 684 SMART PP2C_4 28 317 IPR001932 -
Cco05g2014 684 ProSitePatterns PPM-type phosphatase domain signature. 71 79 IPR000222 GO:0043169(InterPro)
Cco05g2014 684 MobiDBLite consensus disorder prediction 442 598 - -
Cco05g2014 684 MobiDBLite consensus disorder prediction 473 497 - -
Cco05g2014 684 MobiDBLite consensus disorder prediction 443 472 - -
Cco05g2014 684 SUPERFAMILY PP2C-like 41 310 IPR036457 -
Cco05g2014 684 ProSiteProfiles PPM-type phosphatase domain profile. 40 314 IPR001932 -
Cco05g2014 684 Gene3D - 38 314 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2014 Cco-Chr5:29263968 Cco10g0361 Cco-Chr10:4223389 1.50E-72 dispersed
Cco03g1507 Cco-Chr3:29628868 Cco05g2014 Cco-Chr5:29263968 9.40E-28 transposed
Cco10g1325 Cco-Chr10:26212056 Cco05g2014 Cco-Chr5:29263968 5.70E-29 transposed
Cco05g2014 Cco-Chr5:29263968 Cco08g1869 Cco-Chr8:29726702 1.30E-71 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2014 - - - 0.0