Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g2019 ATGTCCTATTCCTCAGACCGATTGAACATCCCAATCTCAATCAGCCTCGAAAATTCCAAAGAAAAGTCTGTATTCGAATGGACCTCATCTGTACTTGGTTCGATCAAATCCAAGTTCTCGAGCCCCGAGTCATACGTATTCACCGCCCAGAATCCCAACCAGGTCCGACCCAACTACGAACTTAAGCACCTGATCATTTACTCGGGCATGTCCTCTTCGCTGTCTCCGAATGCGAACGATGAAGAAAATGTTCGAAGGAACCGAATTCTCTCCAGCAAGCTGTATTTTGACGTTCCTTCTTCAATGGTTCCGGTGATATATTCCTCCTTGTACGATATCTCATTTCTTGGAATAGAGAAGTTGCATCCATTTGATTCGAAGAAATGGGGTCGTGTATGCCAATTCCTTATTGCCGCTGGAGTTTTAAGGAAAGATCAAATCATCGAGCCTTTGGAAGCTAAGAAGAATGATCTTCTGGTGGTACATCCGGAATCATACTTGAATAGTCTGAAGAACAGTTCAAATGTTGCTAGGATTATTGAGGTCCCTCCTGTTGCATTGTTTCCTCATTGTGTTGTCAAGGAGAAAGTTCAACGTCCATTTCGGAACCAGGTTGGAGGGAGCATATTAGCTGGAAAAGTAGCAAAAGAGAGAGGATGGGCCATCAATGTAGGAGGTGGTTTTCACCATTGTTCAGCAGAACAAGGAGGGGGATTTTGTGTGTATGCAGATATTTCTCTGTGTATACACTACGCCTTTGTTCAGCTAAATATATCAAGGGTAATGATTATTGATCTTGATGCCCATCAAGGAAATGGCCATGAAACGGATTTTGCCCATGATAGACGAGTATATATTCTTGACATGTTCAATCCTGGAATATATCCATTTGATTATGAGGCTAGAAGATGCATTGATCAGAAAGTCGAAGTAGTTAGTGGGACCACGACAAGTGAATACTTGAAGAAATTAGACGAAGCACTTGAGGTTGCTGCCACTTCATATGACCCAGAATTAATTGTTTACAATGCTGGGACTGATATTCTAGATGGAGATCCTCTAGGCTTGTTAAAGATTAGTGCTGAGGGAATAGCTAAGAGAGATGAAAAGGTTTTCAGATTTGCTCGTGCGAGGAACATTCCCATTGTGATGCTGACATCAGGCGGTTACATGAAATCTAGCGCTAAAGTCATTGCTGATTCAATCGAAAATCTCTCGACGCAAAGTAGCATGAACCATTTGGCACGGCTTTTCTGTAATCACATGACTTGTATGAATATGTATAAAGTTGGAGCAGAACTGTTTCCAGTACTCTCCACAATGCCAGCTCGTCAAAGATTGGACTACAAGCTTGCCAGGGTAGGATGGGTGAAATCCAAGGCAAGTCGACGTGAAAACCCAAGTGGTAGTGGGATTTTGAATGAAGACAAAAGCAGCATTGAGTTTGATTGGATGCAGGGAAAGGCAGACATTATAAGCCCAATGGCTTGTAGAAACATTAGAAGTAGAATAGATGTAATGGCGACCAAGAAAGCGTCAGCCTTGCAGGGATTAGAAGCCGAGGAATACCAAGAGCTTCAACCTCTCATTGAAACTTACCACAAATTTGAAGCTTCCCCTAACACTACCACTTCCCTTATTACCCAACGCATCGATGCTCCTCTCGACGCCGTTTGGCCTTTCGTTCGCAGCTTCGATAATCCCCAGAAGTATAAGCACTTCATCAAAAGCTGCAATATGTCAGGGGATGGCGGGGTCGGCAGCATTAGAGAGGTGACGGTGGTCTCCGGCCTTCCCGCGTCGACAAGCACAGAAAGGCTAGAGATTTTGGACGACGAGAAGCATATTTTGAGCTTCAGGGTGGTCGGAGGAGAGCACCGGCTGAACAATTACCGATCAGTGACGTCGGTGAATGAGTTCAACAAAGACGGCAAAGTTTACACCATCGTTTTGGAGTCTTACATCGTCGACATACCGGAAGGAAACACCGGCGAGGATACCAAAATGTTTGTCGACACGGTCATCAAATTGAATCTTCAAAAACTTGCTGGAGTTGCCACAGCCTCTCTGCATGAACATGAATAG 2085 44.12 MSYSSDRLNIPISISLENSKEKSVFEWTSSVLGSIKSKFSSPESYVFTAQNPNQVRPNYELKHLIIYSGMSSSLSPNANDEENVRRNRILSSKLYFDVPSSMVPVIYSSLYDISFLGIEKLHPFDSKKWGRVCQFLIAAGVLRKDQIIEPLEAKKNDLLVVHPESYLNSLKNSSNVARIIEVPPVALFPHCVVKEKVQRPFRNQVGGSILAGKVAKERGWAINVGGGFHHCSAEQGGGFCVYADISLCIHYAFVQLNISRVMIIDLDAHQGNGHETDFAHDRRVYILDMFNPGIYPFDYEARRCIDQKVEVVSGTTTSEYLKKLDEALEVAATSYDPELIVYNAGTDILDGDPLGLLKISAEGIAKRDEKVFRFARARNIPIVMLTSGGYMKSSAKVIADSIENLSTQSSMNHLARLFCNHMTCMNMYKVGAELFPVLSTMPARQRLDYKLARVGWVKSKASRRENPSGSGILNEDKSSIEFDWMQGKADIISPMACRNIRSRIDVMATKKASALQGLEAEEYQELQPLIETYHKFEASPNTTTSLITQRIDAPLDAVWPFVRSFDNPQKYKHFIKSCNMSGDGGVGSIREVTVVSGLPASTSTERLEILDDEKHILSFRVVGGEHRLNNYRSVTSVNEFNKDGKVYTIVLESYIVDIPEGNTGEDTKMFVDTVIKLNLQKLAGVATASLHEHE 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29300528 29310102 - CcPI632755_05g020190.1 Cco05g2019 179647

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g2019 694 CDD PYR_PYL_RCAR_like 544 686 - -
Cco05g2019 694 FunFam Histone deacetylase 11 103 412 - -
Cco05g2019 694 Pfam Polyketide cyclase / dehydrase and lipid transport 548 685 IPR019587 -
Cco05g2019 694 CDD HDAC_classIV 122 405 IPR044150 GO:0004407(InterPro)
Cco05g2019 694 Gene3D - 505 694 IPR023393 -
Cco05g2019 694 Pfam Histone deacetylase domain 122 399 IPR023801 -
Cco05g2019 694 Gene3D Histone deacetylase domain 105 438 IPR037138 -
Cco05g2019 694 SUPERFAMILY Bet v1-like 544 687 - -
Cco05g2019 694 PRINTS Histone deacetylase superfamily signature 226 249 IPR000286 -
Cco05g2019 694 PRINTS Histone deacetylase superfamily signature 260 275 IPR000286 -
Cco05g2019 694 PRINTS Histone deacetylase superfamily signature 337 347 IPR000286 -
Cco05g2019 694 PANTHER HISTONE DEACETYLASE HDAC1-RELATED 113 406 IPR050284 GO:0000118(PANTHER)|GO:0004407(PANTHER)|GO:0016575(PANTHER)
Cco05g2019 694 SUPERFAMILY Arginase/deacetylase 103 427 IPR023696 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g2019 K11418 - - csv:101207492 651.358
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2019 Cco-Chr5:29300528 Cco10g0172 Cco-Chr10:1663995 1.50E-51 dispersed
Cco05g2019 Cco-Chr5:29300528 Cco09g1223 Cco-Chr9:12448402 1.60E-53 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g71 Blo01g01469 . Bda01g00617 . . Bpe02g00486 . . . . . . . . . . . . . . . . . . Cla05g01825 Cam05g1947 Cec05g1960 Cco05g2019 Clacu05g1939 Cmu05g1820 Cre05g1945 Cone4ag1657 . . . . . . . . . . . . . . . . Cmo01g01772 . . . . . . . Bhi09g03164 . . . Hepe01g1874 Mch11g0407 . . . . . . . . . . . Cme07g00231
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009853 1 5 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 32